EsuBft1099_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1099_7a-0001
Unique NameEsuBft1099_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_365contigScaffold_365:184979..188812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LBM5
ProteomeIdEsuBft1099_7
Protein domainsPTHR11599
Protein domainsIPR001353
Protein domainsIPR000426
Protein domainsIPR023332
Protein domainsIPR029055
Ownerapollo_admin@sb-roscoff.fr
Noteproteasome subunit alpha type-5 os:mus musculus gn:psma5 pe:1 sv:1 [Automatic annotation]
Nb exon6
Max annot lvl2759|Eukaryota
Length1366
Hectar predicted targeting categoryother localisation
Evalue4.77e-255
EggNOG OGsCOG0638@1|root,KOG0176@2759|Eukaryota
Ec32 ortholog descriptionNucleophile aminohydrolases, N-terminal
Ec32 orthologEc-27_003410.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred namePSMA5
KEGG koko:K02729,ko:K12388
KEGG TC9.A.63.1.3
KEGG Pathwayko03050,ko04142,ko04722,ko04979,map03050,map04142,map04722,map04979
KEGG ModuleM00337,M00340
GOsGO:0000502,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005839,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0010499,GO:0012505,GO:0016020,GO:0016192,GO:0016579,GO:0019538,GO:0019773,GO:0019941,GO:0030141,GO:0030163,GO:0031410,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032940,GO:0032991,GO:0034515,GO:0034774,GO:0036211,GO:0036230,GO:0042119,GO:0042175,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0050896,GO:0051179,GO:0051234,GO:0051603,GO:0060205,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0097708,GO:0099503,GO:0101002,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1904813,GO:1905368,GO:1905369
EC3.4.25.1
Descriptionthreonine-type endopeptidase activity
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko02000,ko03051
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0044281
GO0043161
GO0042590
GO0051439
GO0048522
GO0004540
GO0004298
GO0005730
GO0005774
GO0070062
GO0000075
GO0000279
GO0055085
GO0006950
GO0016070
GO0048523
GO0046686
GO0019773
GO0042981
GO0022626
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1099_7aEsuBft1099_7aEctocarpus subulatus male Bft15bgeneScaffold_365 184979..188812 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1099_7a-0001EsuBft1099_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_365 185139..188812 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1099_7a-0001-exonagat-exon-47598Ectocarpus subulatus male Bft15bexonScaffold_365 184979..185800 -
EsuBft1099_7a-0001-exonagat-exon-47594Ectocarpus subulatus male Bft15bexonScaffold_365 186346..186418 -
EsuBft1099_7a-0001-exonagat-exon-47597Ectocarpus subulatus male Bft15bexonScaffold_365 186787..186958 -
EsuBft1099_7a-0001-exonagat-exon-47596Ectocarpus subulatus male Bft15bexonScaffold_365 187581..187792 -
EsuBft1099_7a-0001-exonagat-exon-47595Ectocarpus subulatus male Bft15bexonScaffold_365 188227..188308 -
EsuBft1099_7a-0001-exonEsuBft1099_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_365 188808..188812 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1099_7a-0001-exonagat-three_prime_utr-966Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_365 184979..185138 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1099_7a-0001-cdsEsuBft1099_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_365 185139..185800 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1099_7a-0001 ID=EsuBft1099_7a-0001|Name=EsuBft1099_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1366bp|location=Sequence derived from alignment at Scaffold_365:184979..188812- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGACGCCGAAAAGCTCCGGTTCGGGAAAAGAAGACGTACGACACAAG
CGTGAGAGCGTTCTCCCCAGACGGTTCCATTTATCAGGTGGAGTACGCCG
CCCAAGCCGCGGACAAGGGGGGCCTGACGATCGGCGTGCAGACGGACAAG
GGCCTGGTGCTCGCGGCGCACGGGCGGCGGCGCTCGCCGCTCCTCAAGGC
CTCCTCGGTGTCCAAGATTGCCGACGTGGACGACGGGCGCATGTGCTGCG
CCATGTCCGGGCTGCTCCCGGACGGCCGCTTGCTGCTCGACTACGCGCGC
ACGTGGGTCCAAGAACACCGCTTCGAGTTTGACGAGGCTCCTAGCGTGGA
GGCGGTGGCGTCCCAGCTCAGCCGTCTGGCGCTCAAGTTCAACGGCTACG
ACAAGGACGGGAAGGCCGGTAACGGCGGGCGGGAGGAAGAGGACGGCGGC
GGTCCGGCCATGTCTCGGCCGGTGGGCGTGGCCCTCCTCATGGCGGGAGT
AGATCGCGGTGATCGGCCGGTGCTGTACCACTTGGATCCTTCCGGAGCCT
ACGTGCAGTGGAGGGCGAGGGCCATCGGCGACAAGGGTGCCGCCGCGGAA
GCAAAGCTGGAGGGGGTTGGCCCCTTCGAGGGCATGAGCGTGCGGCGCGC
GATGGCCGCTGTGCTCGGGGTGCTCCGGGAGGTGCTGGGCGACGATGAGT
TTTCCACGGACCGGCTGGAAATGGTGTGCGTGGACATGATGGGCGGTGGG
CGTGGCAGCGGGGACGGGGGAGGGGGAGAGACAGGAGTATGTTCATCAGG
CGCGGAGCACGCCACGACAAGCGCCAGCGATCACGATAACGTTGGTGGTG
CTGGTGATGGTGCTATTTCTGGGCCTCGTTTCGCTGGCGAGGGGTCGTCG
GTTGGTGCTGCACCGCCTTCGTTGTCGGGAGGGGGGATTAGCGACGGGAT
CGCGAGCGGTGCTCGCAGTTTGATCGGTCGAGATAGCGGGAGTAGTGGTG
TTGGCGGCGTGCTAGAGGGGGGTGTTGAGGTTGGGCAGGAGGATGGGTCG
TCGGCAGCATCTGGCGTTGGTCGTTCCTCCGCCGCTGCCTCTGTTGTGCC
GCGCTACGGGTATTTTCGACGAGTGCCCAAAAGCGAGATGGACGAGCTGC
TTGCCGGAAGCACCAGAGGTGACGGCGAAGAGCCGCCAACAGCAGCGAAT
GGTTAAAAGATTTGATAAATTCGGAATGATGCTGAGGCGTTATGGTGTTG
TATCTACCTAGCTGTTGGGTGTTGTTGAATAGTGACGTGGTGCGAAAGGT
GTACTATAGAAGCGTGATTTCACATTAGTAATGTGTCGTGTCCCACCTGA
ACATTTCACATTTAAC
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protein sequence of EsuBft1099_7a-0001

>EsuBft1099_7 ID=EsuBft1099_7|Name=EsuBft1099_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=401bp
MRRRKAPVREKKTYDTSVRAFSPDGSIYQVEYAAQAADKGGLTIGVQTDK
GLVLAAHGRRRSPLLKASSVSKIADVDDGRMCCAMSGLLPDGRLLLDYAR
TWVQEHRFEFDEAPSVEAVASQLSRLALKFNGYDKDGKAGNGGREEEDGG
GPAMSRPVGVALLMAGVDRGDRPVLYHLDPSGAYVQWRARAIGDKGAAAE
AKLEGVGPFEGMSVRRAMAAVLGVLREVLGDDEFSTDRLEMVCVDMMGGG
RGSGDGGGGETGVCSSGAEHATTSASDHDNVGGAGDGAISGPRFAGEGSS
VGAAPPSLSGGGISDGIASGARSLIGRDSGSSGVGGVLEGGVEVGQEDGS
SAASGVGRSSAAASVVPRYGYFRRVPKSEMDELLAGSTRGDGEEPPTAAN
G
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mRNA from alignment at Scaffold_365:184979..188812-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1099_7a-0001 ID=EsuBft1099_7a-0001|Name=EsuBft1099_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3834bp|location=Sequence derived from alignment at Scaffold_365:184979..188812- (Ectocarpus subulatus male Bft15b)
ATGAGGTCCCAGTGGCCTTGGCAGGGTTCCACTGTTAATGAAGCATGTTG
GAAGCATGCAATCGGGGAAGTTTGGTGAGGGTTAGGGGTAGGGTCTGCGT
AACCCCCTCCCTGTTCTCTCTGTCCTCGATACACTTTTAATTTTCTCGAG
AAGGCGGTCCCAGCATGAGGCAGCATGGCGCATCATCCCACAGGCCCTCG
ATAAGGCACGGCGATCAAGCACCTCCATCGTTAACTGTACAGTCGTGGCT
CCGATTGAAGAGGGTACCTTAAAGTAGGGCTCCGATGTACGAGGGTCCAA
ATCGATTATCACGACTTGGACTCTGTAGTGTATTTGAGCACTCTCTTTCT
CCGGTACAAGAGGGGGCTCCGATAAGAGGGTGTCGAGCCGTTGTCACACC
ACCCTCGTATAACGGAGCCACGACTGTGGACGTGGACTTGGTGCTGGAGA
TGGACCATCGAACCATGCTGTCTGTGCCTCCTCTCTCTTGCGCGCTTTGT
GCAGACGCCGAAAAGCTCCGGTTCGGGAAAAGAAGACGTACGACACAAGC
GTGAGAGCGTTCTCCCCAGACGGTTCCATTTATCAGGTACGTCAAAGTTG
AAAGAGCTGTGTTGATGCTCATGTATGGTACACGCGGTGGCTGTTACAAC
CGTATGTGTAGAGCGATCTGATACAAGAGCTTCCAGCACCGCCAGAAACA
TGTCACTATGGCACCCACGTCGACACAAAGATGGAAACATAGTCACGCAA
AAGTTTATCAACGTAGAAGCACGGGTAGACGGATAGACAGGCACGCAGTC
GGGCACAGACAAGAGGCAAAGAACTAGGTAGATGGAACTGCTGAAGCTGT
CAGCGGTTCCATACCAGCACATACAAATGCACATGTTTTTCGTGTATTTC
TTTCCTCGCTGCCGGCGCCAACATAACCGACGGATGCCAGAACCTCTTCC
TGTGAAACTCGGAAGACGTGTTCCCAAGACGCCCAGACCCACACGACAAT
CACACCCGCCCACCCTCCAGGTGGAGTACGCCGCCCAAGCCGCGGACAAG
GGGGGCCTGACGATCGGCGTGCAGACGGACAAGGGCCTGGTGCTCGCGGC
GCACGGGCGGCGGCGCTCGCCGCTCCTCAAGGCCTCCTCGGTGTCCAAGA
TTGCCGACGTGGACGACGGGCGCATGTGCTGCGCCATGTCCGGGCTGCTC
CCGGACGGCCGCTTGCTGCTCGACTACGCGCGGTGAGTTAGTTAGGTCTC
GCAGCGACCCCTCGTACGCGGAGTATGTTTGAGGCCCACGTGCCTTCTTG
CGGAGGCTAACGTGCCCACCCACGGTAGTATTGAGTATGTCTGGGGACTA
AGTTAACCCAGCACCGATGCAGGTGATATAGAACCTTGATTAACACACAC
CCGTGCTCCTTCCAGCACAGTTCACAGTATTTTATAGTCAACACAGACTG
AACATGTGCGCGGGCTCTCTCTCGCTCTCTCTCTCTCTCTCGAGGGTCCC
CGCACTTGGACCCCCAATAGCATACCCCCCCTAAACACGTACTCCCCAGG
TCAACTCTTGTATCCAAGTGCCCCAAACACCGTATACACGTACCTGTTTG
TTTTGCTCATGTTTGAACCTTTTTCTTTTGACATGCCCGGTATGTGTGTC
GGCAGCCTCTCTCTGATGCAACGTATTCGCGGAACCAGGTCTTGTCGTGT
GAAGCTTTGTGGCACGACCGTGGAAACGAACTTCCACCCGCACTGTCTGT
CCAACTGTCCGTCCTCCCGTCGGCCCGTCGTTTGCTCGTGTCTTGTCTGT
CGGCGGAACAAACGCGCACACGGCATCACGAACCACACACATATTTATTC
ATAGCACGTGGGTCCAAGAACACCGCTTCGAGTTTGACGAGGCTCCTAGC
GTGGAGGCGGTGGCGTCCCAGCTCAGCCGTCTGGCGCTCAAGTTCAACGG
CTACGACAAGGACGGGAAGGCCGGTAACGGCGGGCGGGAGGAAGAGGACG
GCGGCGGTCCGGCCATGTCTCGGCCGGTGAGAGCTACAGCATGTAGCGAC
GAACGGCCCGGCTGTTTCGAAGCTCGTAGAACGTTGTGCAGGGGGTTGGT
ATCGATGTCCTCCTGTTGTTGCTTGGCGATGCCGTACGCTTTTCTTGCCT
GCGTTGTATGCACGGGGTGTATTGTAGCGCGATGGTCGTTCCTCTACCAG
TCACTTGACTGGCTGACTTGCTGCTCGTTCACTCACTTGCTTCTTGCTCG
CTTGTGCACCACCGATCAAATCGCTGCTCGGTTATTATTTCCTCGCCAGC
ATGAATGGATGGAAATGGATGGAAATGAAGGCAGAAAACACATTGTTGTG
TGCAAACGCTTCTTCCTTTCTCGTTTGTTGTCTTCTGGTGTCAGGTGGGC
GTGGCCCTCCTCATGGCGGGAGTAGATCGCGGTGATCGGCCGGTGCTGTA
CCACTTGGATCCTTCCGGTGAGCAGCGGAGGAAATTTTTGCAGGGCAGAC
TCGCTTGTTGCATGCTTCGACGTTAGCGGATGTCTTTGAAGGGAGTGCCG
CGAACTGATGGCACATCTGGCAGCACCGGACGCCTTGAAGTGCCGGGGTT
GTACAGCAGTATGGCGTCGTTGAGTTTTCTTTAGGGGGGTGGAAGGTGGC
AGGAGTCGTTCTTTCCCTGCGTGTCTGAATGATACACGCGTTTTTTGCTA
CACCGAGGACGTGGCACCGCTTATGTTCTCACCTTAAGAGACTTCCTTTC
CAACATGTGGGCGCTCATTCCATCGCCATGCTTTTTTGCACTCTTACCTT
GAAATGCCCTTGTTTTACTCGTCGCAGACTCCTCCTCCTCCTTTGCTCTA
TTCCTCATTTGCTCTTGTTGCCCTTGTGTCGCTCAAAAGGCGCGGTAGCT
GCCTCACCTACCGTGGCATCCCCAGCCTTGCCGCTTGCCGACGTACAATG
TTATGGGCTTTCGTTGTCCTGTTTTCTCACTTTTGGTCCCGCCTTTGGTG
TGTCTCGCGTAGGAGCCTACGTGCAGTGGAGGGCGAGGGCCATCGGCGAC
AAGGGTGCCGCCGCGGAAGCAAAGCTGGAGGGGGTTGGCCCCTTCGAGGG
CATGAGCGTGCGGCGCGCGATGGCCGCTGTGCTCGGGGTGCTCCGGGAGG
TGCTGGGCGACGATGAGTTTTCCACGGACCGGCTGGAAATGGTGTGCGTG
GACATGATGGGCGGTGGGCGTGGCAGCGGGGACGGGGGAGGGGGAGAGAC
AGGAGTATGTTCATCAGGCGCGGAGCACGCCACGACAAGCGCCAGCGATC
ACGATAACGTTGGTGGTGCTGGTGATGGTGCTATTTCTGGGCCTCGTTTC
GCTGGCGAGGGGTCGTCGGTTGGTGCTGCACCGCCTTCGTTGTCGGGAGG
GGGGATTAGCGACGGGATCGCGAGCGGTGCTCGCAGTTTGATCGGTCGAG
ATAGCGGGAGTAGTGGTGTTGGCGGCGTGCTAGAGGGGGGTGTTGAGGTT
GGGCAGGAGGATGGGTCGTCGGCAGCATCTGGCGTTGGTCGTTCCTCCGC
CGCTGCCTCTGTTGTGCCGCGCTACGGGTATTTTCGACGAGTGCCCAAAA
GCGAGATGGACGAGCTGCTTGCCGGAAGCACCAGAGGTGACGGCGAAGAG
CCGCCAACAGCAGCGAATGGTTAAAAGATTTGATAAATTCGGAATGATGC
TGAGGCGTTATGGTGTTGTATCTACCTAGCTGTTGGGTGTTGTTGAATAG
TGACGTGGTGCGAAAGGTGTACTATAGAAGCGTGATTTCACATTAGTAAT
GTGTCGTGTCCCACCTGAACATTTCACATTTAAC
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Coding sequence (CDS) from alignment at Scaffold_365:184979..188812-

>EsuBft1099_7a-0001 ID=EsuBft1099_7a-0001|Name=EsuBft1099_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1206bp|location=Sequence derived from alignment at Scaffold_365:184979..188812- (Ectocarpus subulatus male Bft15b)
ATGAGACGCCGAAAAGCTCCGGTTCGGGAAAAGAAGACGTACGACACAAG
CGTGAGAGCGTTCTCCCCAGACGGTTCCATTTATCAGGTGGAGTACGCCG
CCCAAGCCGCGGACAAGGGGGGCCTGACGATCGGCGTGCAGACGGACAAG
GGCCTGGTGCTCGCGGCGCACGGGCGGCGGCGCTCGCCGCTCCTCAAGGC
CTCCTCGGTGTCCAAGATTGCCGACGTGGACGACGGGCGCATGTGCTGCG
CCATGTCCGGGCTGCTCCCGGACGGCCGCTTGCTGCTCGACTACGCGCGC
ACGTGGGTCCAAGAACACCGCTTCGAGTTTGACGAGGCTCCTAGCGTGGA
GGCGGTGGCGTCCCAGCTCAGCCGTCTGGCGCTCAAGTTCAACGGCTACG
ACAAGGACGGGAAGGCCGGTAACGGCGGGCGGGAGGAAGAGGACGGCGGC
GGTCCGGCCATGTCTCGGCCGGTGGGCGTGGCCCTCCTCATGGCGGGAGT
AGATCGCGGTGATCGGCCGGTGCTGTACCACTTGGATCCTTCCGGAGCCT
ACGTGCAGTGGAGGGCGAGGGCCATCGGCGACAAGGGTGCCGCCGCGGAA
GCAAAGCTGGAGGGGGTTGGCCCCTTCGAGGGCATGAGCGTGCGGCGCGC
GATGGCCGCTGTGCTCGGGGTGCTCCGGGAGGTGCTGGGCGACGATGAGT
TTTCCACGGACCGGCTGGAAATGGTGTGCGTGGACATGATGGGCGGTGGG
CGTGGCAGCGGGGACGGGGGAGGGGGAGAGACAGGAGTATGTTCATCAGG
CGCGGAGCACGCCACGACAAGCGCCAGCGATCACGATAACGTTGGTGGTG
CTGGTGATGGTGCTATTTCTGGGCCTCGTTTCGCTGGCGAGGGGTCGTCG
GTTGGTGCTGCACCGCCTTCGTTGTCGGGAGGGGGGATTAGCGACGGGAT
CGCGAGCGGTGCTCGCAGTTTGATCGGTCGAGATAGCGGGAGTAGTGGTG
TTGGCGGCGTGCTAGAGGGGGGTGTTGAGGTTGGGCAGGAGGATGGGTCG
TCGGCAGCATCTGGCGTTGGTCGTTCCTCCGCCGCTGCCTCTGTTGTGCC
GCGCTACGGGTATTTTCGACGAGTGCCCAAAAGCGAGATGGACGAGCTGC
TTGCCGGAAGCACCAGAGGTGACGGCGAAGAGCCGCCAACAGCAGCGAAT
GGTTAA
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