EsuBft1099_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1099_5a-0001
Unique Name	EsuBft1099_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_365	contig	Scaffold_365:176476..179224 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Status	Manually annotated
Seed ortholog	2880.D8LBM7
ProteomeId	EsuBft1099_5
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	TMhelix
Protein domains	PTHR24089
Protein domains	SignalP-TM
Protein domains	SignalP-noTM
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	IPR023395
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	IPR018108
Owner	apollo_admin@sb-roscoff.fr
Note	mitochondrial carrier protein pet8 os:saccharomyces cerevisiae (strain atcc 204508 s288c) gn:pet8 pe:1 sv:1 [Automatic annotation]
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	2208
Hectar predicted targeting category	signal peptide
Evalue	1.46e-219
EggNOG OGs	KOG0768@1\|root,KOG0768@2759\|Eukaryota
Ec32 ortholog description	mitochondrial phosphate carrier protein
Ec32 ortholog	Ec-27_003390.1
Date last modified	2017-01-13
Date creation	2016-06-14
KEGG ko	ko:K15111
KEGG TC	2.A.29.18
Description	Putative mitochondrial carrier protein
Description	S-adenosyl-L-methionine transmembrane transport
COG category	U
BRITE	ko00000,ko02000
Note	Groisillier A., annotator

Cross References

External references for this mRNA


Database	Accession
TCDB	2.A.29...
GO	0009658
GO	0009941
GO	0000095
GO	1901962
GO	0044237
GO	0005743

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1099_5a	EsuBft1099_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_365 176476..179224 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1099_5a-0001	EsuBft1099_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_365 176569..177573 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1099_5a-0001-exon	agat-exon-47589	Ectocarpus subulatus male Bft15b	exon	Scaffold_365 176476..177609 +
EsuBft1099_5a-0001-exon	EsuBft1099_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_365 178151..179224 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1099_5a-0001-exon	agat-five_prime_utr-607	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_365 176476..176568 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1099_5a-0001-cds	EsuBft1099_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_365 176569..177573 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1099_5a-0001-exon	agat-three_prime_utr-963	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_365 177574..177609 +
EsuBft1099_5a-0001-exon	agat-three_prime_utr-964	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_365 178151..179224 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_365:176476..179224+
coding sequence from alignment at Scaffold_365:176476..179224+

spliced messenger RNA

>EsuBft1099_5a-0001 ID=EsuBft1099_5a-0001|Name=EsuBft1099_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2208bp|location=Sequence derived from alignment at Scaffold_365:176476..179224+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGCAGCCAGGGACGGGTTAGCAGCACAAGGCCGACAGAGAAGAGAGAAAA
GGCACTGCTTGTCGCTGCCACTGTAGATTGAGCTGCAAGATAGATGAGGG
TCCTGGCAGGATGCGTCGCGATGGTGCTCCTCGCCCTGCCGACCAGCAAC
GCCGCGCAGAAAGCTGGGACTGTCAAGTTGCCGGCGGGGAAGGGCAAGAA
GAGCAAAGCGGCTGCAGAGAGTAAGGCGCTGCCGGAGCTGAGCACGAAGG
ATAGCTTCGTGACCGGCCTCCTCTCCGGGGCCGTGGCGGGGACCACCGTG
GACCTCGTCCTGTACCCGCTGGATACGGTCAAGACGCGCCTGCAGGCGAC
GGCGGGGGCCAAGCTCTCCATGAACACGTTCCGCGGGCTCTTCAACGGCG
TCGCTCCCGCCATCGCCGCCAGCGCTCCCTGCGCCGCCGCGTTCTTCGGC
GCCTACGACTCCCTCAAGCGCGTGCTCACGGAGAAGCTGCCGGACGAGTA
CGCCTCCGTCGCGCACGCCGGGGCGGCGGCCGGCGCGGACCTCGCCCAGA
GCGTCGTCCGAGTGCCCTTCGAGGTCATCAAGCAGCGGGTGCAGGCAGGC
GTGGACGCCTCCGGGAGAGCCGCCCTCGCCAGCGTCATGAAGTCGCAGGG
GCCCAGGGGCCTCTACCGGGGCTGGGGCGCACTGGCCCTGCGCGACCTTC
CCTTCGACATCATCGAGTTCCCCCTCTACGAGTGGCTCAAGAGCGAGTGG
ACCAAGGTCAAGGGGGAGAAGCTGGCGCCCTGGCAGGGCTCCCTGTGCGG
GTCGGTCGCGGGGGGCATCGCCGCCGGGCTCACGACCCCGCTCGATGTCG
TCAAGACGCGGCTCATGACCCAGAGCCCCGGGCAGTACGCCGGCATCGGC
GAGTGCTTGAGATCAATCCTGAAGGAGGAGGGTCCGGGGGCGCTGTTCGC
CGGGTCGGTGCCGAGGATGACGTCCATCGCCTTCGGCGGCGCCATCTTCT
TCGGTGCGTACGAGACGGCCAAGTCGATAATCTCGGTCAAGATGGAGGAG
AGGGCCACCGCTGCTACAGCGGCGGCTGCGAGCGGGAAGAAGAAATAGGG
CTAGGAAAAGGCGGATGTTCTAGGAGATCGACAGGTTAGGTTTGATCGCG
GCGTCGGGCTTGCATGCGGACGGCGGTAGAGCTACTGGCAAACACGGCAA
GCCGCCCTTCTCTGTTGCTTCGCGTGAGGCGTTATGACGGGAGAACTCGG
AGGGTGGAGGGGGTGGAGTAGGGCGTTTCGGTTCCTCTGTTGTCGATAGA
TAAGCAACGCGCGTTCCTGCGAATGAATCAACAGCGCTGTGAGCTGGGCG
GGTTGGCGCGGTTTCAAGGCTCTCGTACTGTAAGCAAGAACGTGTTCGCC
TATTGTAACGAGAAGAGGTGGTGTGCTGCCCTGTTGGTGATATCAGCCAG
TGCGTGATGTTTGAGAGGATCAGGTTGCCTTCTTCTCAGCCAGCGTTGTG
ACCGATTTTTGTTCTTCGGCGAAGGGCTAATAATGACGAAGAAGAGTGTG
TGTGAGATAGAGAGATTCGTTCCGTATGCATATGTTTGCAAGACGCGATC
TTATTTCTAACAGCTTTGCTAATATCGACAGATTTTGACGGCCGTTTTGG
GGGGCCGTGCTGCGTTGTAATCGCCTCAGCAAAATAAGACCAGAGACCGG
CACGAGTCGGGCGGCATTGCGACGTAGGAACAACAGGTAGGTAGTGTGAA
GGTTTAGTTGTTGTAGTTGTAAACCATTTTATGTTGCAGTCATTTTTAAA
ACCTGCGGAGGTGCCTGCGTGTTGAAATACAAGAGACCAACTCTTTAGAG
AGGGAGAGAGAGATGGAACGAGAGATATCGGATTTTAGTATCGGGGGAGT
TTCCGCACTTCAACACCCCATTTTTGTGCAGGTGGGCTCACAGTAGAGAG
TGCTTCGACAGCCCTACAGCGCTACCCTGAGTATAAAGTTGCCGTGTCTC
TCTCTGCGTCAGCGCTTATCCTCGGAGGCTCTCGACGAGCCCACTCAATT
GTGACGGTGTTCCAGGACATCGTTGTTTGCTGTATCACTTGGTCGCCATG
ATGGTTGGGAGTTTATTTTTCGCGGAACTTAACGACGAATAGTTCGACAG
CTAGGTTGGACGTTTCCCGCTCCTGGGCCCAATTTTGGCGTATCACTCGC
TTCGTGGT

protein sequence of EsuBft1099_5a-0001

>EsuBft1099_5 ID=EsuBft1099_5|Name=EsuBft1099_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=334bp
MRVLAGCVAMVLLALPTSNAAQKAGTVKLPAGKGKKSKAAAESKALPELS
TKDSFVTGLLSGAVAGTTVDLVLYPLDTVKTRLQATAGAKLSMNTFRGLF
NGVAPAIAASAPCAAAFFGAYDSLKRVLTEKLPDEYASVAHAGAAAGADL
AQSVVRVPFEVIKQRVQAGVDASGRAALASVMKSQGPRGLYRGWGALALR
DLPFDIIEFPLYEWLKSEWTKVKGEKLAPWQGSLCGSVAGGIAAGLTTPL
DVVKTRLMTQSPGQYAGIGECLRSILKEEGPGALFAGSVPRMTSIAFGGA
IFFGAYETAKSIISVKMEERATAATAAAASGKKK

mRNA from alignment at Scaffold_365:176476..179224+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1099_5a-0001 ID=EsuBft1099_5a-0001|Name=EsuBft1099_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2749bp|location=Sequence derived from alignment at Scaffold_365:176476..179224+ (Ectocarpus subulatus male Bft15b)
GGCAGCCAGGGACGGGTTAGCAGCACAAGGCCGACAGAGAAGAGAGAAAA
GGCACTGCTTGTCGCTGCCACTGTAGATTGAGCTGCAAGATAGATGAGGG
TCCTGGCAGGATGCGTCGCGATGGTGCTCCTCGCCCTGCCGACCAGCAAC
GCCGCGCAGAAAGCTGGGACTGTCAAGTTGCCGGCGGGGAAGGGCAAGAA
GAGCAAAGCGGCTGCAGAGAGTAAGGCGCTGCCGGAGCTGAGCACGAAGG
ATAGCTTCGTGACCGGCCTCCTCTCCGGGGCCGTGGCGGGGACCACCGTG
GACCTCGTCCTGTACCCGCTGGATACGGTCAAGACGCGCCTGCAGGCGAC
GGCGGGGGCCAAGCTCTCCATGAACACGTTCCGCGGGCTCTTCAACGGCG
TCGCTCCCGCCATCGCCGCCAGCGCTCCCTGCGCCGCCGCGTTCTTCGGC
GCCTACGACTCCCTCAAGCGCGTGCTCACGGAGAAGCTGCCGGACGAGTA
CGCCTCCGTCGCGCACGCCGGGGCGGCGGCCGGCGCGGACCTCGCCCAGA
GCGTCGTCCGAGTGCCCTTCGAGGTCATCAAGCAGCGGGTGCAGGCAGGC
GTGGACGCCTCCGGGAGAGCCGCCCTCGCCAGCGTCATGAAGTCGCAGGG
GCCCAGGGGCCTCTACCGGGGCTGGGGCGCACTGGCCCTGCGCGACCTTC
CCTTCGACATCATCGAGTTCCCCCTCTACGAGTGGCTCAAGAGCGAGTGG
ACCAAGGTCAAGGGGGAGAAGCTGGCGCCCTGGCAGGGCTCCCTGTGCGG
GTCGGTCGCGGGGGGCATCGCCGCCGGGCTCACGACCCCGCTCGATGTCG
TCAAGACGCGGCTCATGACCCAGAGCCCCGGGCAGTACGCCGGCATCGGC
GAGTGCTTGAGATCAATCCTGAAGGAGGAGGGTCCGGGGGCGCTGTTCGC
CGGGTCGGTGCCGAGGATGACGTCCATCGCCTTCGGCGGCGCCATCTTCT
TCGGTGCGTACGAGACGGCCAAGTCGATAATCTCGGTCAAGATGGAGGAG
AGGGCCACCGCTGCTACAGCGGCGGCTGCGAGCGGGAAGAAGAAATAGGG
CTAGGAAAAGGCGGATGTTCTAGGAGATCGACAGGTTTGTTTGTGTGCGA
GGGTGTGCTGTCTGCGTGCAAAGCATTGGTTCTACACATGGTTACCAATT
TGCCATCGGGCTTCTCGAGCTCCTTCAGGAAGGCGTTCCTGTTGACGTCA
TCGCTACCTCAGCATGCAATCGCAAACGGCAGCGCGCCCTGCTACGTTCG
AAGTAAAACATAAACATTTGCACTCGTATTTACCTCCCAAGGGGCCGACT
TGCAAGTATAGCATCCCAGGTTGTTCCCACGGGGTCGGTGTTCGGTACGG
CGGTGCCTTGGTTGCGACCTAAGGTTCATCGCCCATGTACTTCCAAAGTT
CTAGCTTACAGCCCGCTCCTCTCGGGCCCCGTTTTTCTGTACATTCTCCC
CACCACACCATCTGTTCGCTGACGTTCGCAGCAGTTCGAGTTCCTCTAAT
GTTTGACTGATGGTATCTACATCTACATAGTTCAACTGCAGCCAACGCTG
TGGTGGTTCGACGCCCCTCATCTTCACTTGCCCGCCCGTTCCCGTTCCAC
GACCCTCTCGTGTACCCGCTCCCAGGTTAGGTTTGATCGCGGCGTCGGGC
TTGCATGCGGACGGCGGTAGAGCTACTGGCAAACACGGCAAGCCGCCCTT
CTCTGTTGCTTCGCGTGAGGCGTTATGACGGGAGAACTCGGAGGGTGGAG
GGGGTGGAGTAGGGCGTTTCGGTTCCTCTGTTGTCGATAGATAAGCAACG
CGCGTTCCTGCGAATGAATCAACAGCGCTGTGAGCTGGGCGGGTTGGCGC
GGTTTCAAGGCTCTCGTACTGTAAGCAAGAACGTGTTCGCCTATTGTAAC
GAGAAGAGGTGGTGTGCTGCCCTGTTGGTGATATCAGCCAGTGCGTGATG
TTTGAGAGGATCAGGTTGCCTTCTTCTCAGCCAGCGTTGTGACCGATTTT
TGTTCTTCGGCGAAGGGCTAATAATGACGAAGAAGAGTGTGTGTGAGATA
GAGAGATTCGTTCCGTATGCATATGTTTGCAAGACGCGATCTTATTTCTA
ACAGCTTTGCTAATATCGACAGATTTTGACGGCCGTTTTGGGGGGCCGTG
CTGCGTTGTAATCGCCTCAGCAAAATAAGACCAGAGACCGGCACGAGTCG
GGCGGCATTGCGACGTAGGAACAACAGGTAGGTAGTGTGAAGGTTTAGTT
GTTGTAGTTGTAAACCATTTTATGTTGCAGTCATTTTTAAAACCTGCGGA
GGTGCCTGCGTGTTGAAATACAAGAGACCAACTCTTTAGAGAGGGAGAGA
GAGATGGAACGAGAGATATCGGATTTTAGTATCGGGGGAGTTTCCGCACT
TCAACACCCCATTTTTGTGCAGGTGGGCTCACAGTAGAGAGTGCTTCGAC
AGCCCTACAGCGCTACCCTGAGTATAAAGTTGCCGTGTCTCTCTCTGCGT
CAGCGCTTATCCTCGGAGGCTCTCGACGAGCCCACTCAATTGTGACGGTG
TTCCAGGACATCGTTGTTTGCTGTATCACTTGGTCGCCATGATGGTTGGG
AGTTTATTTTTCGCGGAACTTAACGACGAATAGTTCGACAGCTAGGTTGG
ACGTTTCCCGCTCCTGGGCCCAATTTTGGCGTATCACTCGCTTCGTGGT

Coding sequence (CDS) from alignment at Scaffold_365:176476..179224+

>EsuBft1099_5a-0001 ID=EsuBft1099_5a-0001|Name=EsuBft1099_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1005bp|location=Sequence derived from alignment at Scaffold_365:176476..179224+ (Ectocarpus subulatus male Bft15b)
ATGAGGGTCCTGGCAGGATGCGTCGCGATGGTGCTCCTCGCCCTGCCGAC
CAGCAACGCCGCGCAGAAAGCTGGGACTGTCAAGTTGCCGGCGGGGAAGG
GCAAGAAGAGCAAAGCGGCTGCAGAGAGTAAGGCGCTGCCGGAGCTGAGC
ACGAAGGATAGCTTCGTGACCGGCCTCCTCTCCGGGGCCGTGGCGGGGAC
CACCGTGGACCTCGTCCTGTACCCGCTGGATACGGTCAAGACGCGCCTGC
AGGCGACGGCGGGGGCCAAGCTCTCCATGAACACGTTCCGCGGGCTCTTC
AACGGCGTCGCTCCCGCCATCGCCGCCAGCGCTCCCTGCGCCGCCGCGTT
CTTCGGCGCCTACGACTCCCTCAAGCGCGTGCTCACGGAGAAGCTGCCGG
ACGAGTACGCCTCCGTCGCGCACGCCGGGGCGGCGGCCGGCGCGGACCTC
GCCCAGAGCGTCGTCCGAGTGCCCTTCGAGGTCATCAAGCAGCGGGTGCA
GGCAGGCGTGGACGCCTCCGGGAGAGCCGCCCTCGCCAGCGTCATGAAGT
CGCAGGGGCCCAGGGGCCTCTACCGGGGCTGGGGCGCACTGGCCCTGCGC
GACCTTCCCTTCGACATCATCGAGTTCCCCCTCTACGAGTGGCTCAAGAG
CGAGTGGACCAAGGTCAAGGGGGAGAAGCTGGCGCCCTGGCAGGGCTCCC
TGTGCGGGTCGGTCGCGGGGGGCATCGCCGCCGGGCTCACGACCCCGCTC
GATGTCGTCAAGACGCGGCTCATGACCCAGAGCCCCGGGCAGTACGCCGG
CATCGGCGAGTGCTTGAGATCAATCCTGAAGGAGGAGGGTCCGGGGGCGC
TGTTCGCCGGGTCGGTGCCGAGGATGACGTCCATCGCCTTCGGCGGCGCC
ATCTTCTTCGGTGCGTACGAGACGGCCAAGTCGATAATCTCGGTCAAGAT
GGAGGAGAGGGCCACCGCTGCTACAGCGGCGGCTGCGAGCGGGAAGAAGA
AATAG