EsuBft1099_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1099_4a-0001
Unique NameEsuBft1099_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_365contigScaffold_365:174894..176344 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1099_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length126
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_003380.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1099_4aEsuBft1099_4aEctocarpus subulatus male Bft15bgeneScaffold_365 174894..176344 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1099_4a-0001-exonEsuBft1099_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_365 174894..175965 -
EsuBft1099_4a-0001-exonagat-exon-47588Ectocarpus subulatus male Bft15bexonScaffold_365 176152..176344 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1099_4a-0001-cdsEsuBft1099_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_365 174894..175883 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1099_4a-0001-exonagat-five_prime_utr-605Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_365 175884..175965 -
EsuBft1099_4a-0001-exonagat-five_prime_utr-606Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_365 176152..176344 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1099_4a-0001EsuBft1099_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_365 174894..175883 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1099_4a-0001 ID=EsuBft1099_4a-0001|Name=EsuBft1099_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1265bp|location=Sequence derived from alignment at Scaffold_365:174894..176344- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTTACCATTTGTTCCTTGTGTTCTTGATTTTTGTTCCAGACTATTTTGTT
GTGGGAAGGACGCACATATATATCTGGTCTGCCTGCTTCGTCAAGGAGTG
GCGTGAGACACGGAAGGGAGTAACGGCACAACGGAGTTGCCACGCCCTTG
TCCTGAGGGAGGCATCCAGCCACGACCAAGGTAACGCATCCAGGCAAGAC
AGGTGCCCACCCTGATCCAGCACAGCCAGCACAGCCAGTACGCCGCCGTC
GCGAGGGGCAGCACATCGAGAAGATATGTTCTCTTTCCTCAACCTTCAGA
ATTTTAACTTCGATTTCGTCGGAGACTCGATCTCCAACAGCGGGCGCACC
GGCAAGAAGAAGACCAGCAGCAGCAATGGCAAGAGAGAGTCTGGCAAGCA
GCTCTGGCTCTGGGAGTCGCACGGCTCCTCCTCCTCCTCGCCGACGGCCA
ACAGCACTGCCAACATGACTCCGAGGACCGAGCCCGTCGTCACCCCGCCG
CCGAAGAGGGCGCCGTTGGATTGCCCCGCGGCTCGCCCGGAGACGGAGAG
GGCCAAGCGGCGCTCCTTGTCGCAGCAGAGCGCGGTGCGCAACAACAACA
ATGAACAACGGCGCTCGTCCGTGTTCTTCAGGCTCCCCGACCTCGACAAG
ATCCTCAAGGGCGACAACGCCAACAGCAGCAGCTCAGCAGAGGCCGTCGC
CGGCGGCAGCAAGAAGGATGTGCGCAGCGCCAGCAGAAGCGTCACCGGCA
GCAAGGGTCACCACCAAGGCATGGGCGGCGGCGACGGGGACTTCGGGCAA
AGCCTCGCGGCCAAGCTCAGCCGGCCCGTTTCGGGCCGCAGGCGCGGCCG
TCGGGCTTCCGTTGCGCCCGGCGGTTCCTCGCCCGGGCGTACGAGAGAGG
ATCGCTTAGCAGCAGCGGAAGAGGAAGCAAGGAACGCGGCCGCGGCGGCG
GCGGAGAGGTCAACGTCCGTGTTGGATGATGAAGAGTCCCATGAAGAAGG
TTCGGCTGGTACCGCGCCTGCCGCTGCTGCGGCGGGGGGAGACGAAGGAC
CACGGTTCTTCGAATCGAAACGGGACAGCTTGCTGCTGACCGTTGGGGAG
GAGGAGGAGGTGCTGGCGCCGGCTGCTGCTGCTGCAGCCGAAGGTGATGC
TTTGCACCAGAAGCAGCAGCAAAAGGGTGATCGTTCGAGGGATCATAAGC
GGCCGTCCCCAAGATCTTCGCCGAGAGCTCTCAGCGCCGGCCACAGGTAT
TTCGATGCGTTTTAG
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protein sequence of EsuBft1099_4a-0001

>EsuBft1099_4 ID=EsuBft1099_4|Name=EsuBft1099_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=329bp
MFSFLNLQNFNFDFVGDSISNSGRTGKKKTSSSNGKRESGKQLWLWESHG
SSSSSPTANSTANMTPRTEPVVTPPPKRAPLDCPAARPETERAKRRSLSQ
QSAVRNNNNEQRRSSVFFRLPDLDKILKGDNANSSSSAEAVAGGSKKDVR
SASRSVTGSKGHHQGMGGGDGDFGQSLAAKLSRPVSGRRRGRRASVAPGG
SSPGRTREDRLAAAEEEARNAAAAAAERSTSVLDDEESHEEGSAGTAPAA
AAAGGDEGPRFFESKRDSLLLTVGEEEEVLAPAAAAAAEGDALHQKQQQK
GDRSRDHKRPSPRSSPRALSAGHRYFDAF
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mRNA from alignment at Scaffold_365:174894..176344-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1099_4a-0001 ID=EsuBft1099_4a-0001|Name=EsuBft1099_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1451bp|location=Sequence derived from alignment at Scaffold_365:174894..176344- (Ectocarpus subulatus male Bft15b)
TTTACCATTTGTTCCTTGTGTTCTTGATTTTTGTTCCAGACTATTTTGTT
GTGGGAAGGACGCACATATATATCTGGTCTGCCTGCTTCGTCAAGGAGTG
GCGTGAGACACGGAAGGGAGTAACGGCACAACGGAGTTGCCACGCCCTTG
TCCTGAGGGAGGCATCCAGCCACGACCAAGGTAACGCATCCAGGTACTCA
GAGGTGGGGTGAAGACTGTTGAGTACTGCTGCAGCTGCCTCTGCAAAAAG
GTTCGGCTGTGGACAGATCCTTGGAGTACGTTTTTACTACGTGACCCCAC
TCGCAAACATTGCTCGCCTCTCATTTGCCGCGCGTTCTCTCTCTCGCTCC
GTTCCATGCGTGACTCTGCCTCCTGGCAGGCAAGACAGGTGCCCACCCTG
ATCCAGCACAGCCAGCACAGCCAGTACGCCGCCGTCGCGAGGGGCAGCAC
ATCGAGAAGATATGTTCTCTTTCCTCAACCTTCAGAATTTTAACTTCGAT
TTCGTCGGAGACTCGATCTCCAACAGCGGGCGCACCGGCAAGAAGAAGAC
CAGCAGCAGCAATGGCAAGAGAGAGTCTGGCAAGCAGCTCTGGCTCTGGG
AGTCGCACGGCTCCTCCTCCTCCTCGCCGACGGCCAACAGCACTGCCAAC
ATGACTCCGAGGACCGAGCCCGTCGTCACCCCGCCGCCGAAGAGGGCGCC
GTTGGATTGCCCCGCGGCTCGCCCGGAGACGGAGAGGGCCAAGCGGCGCT
CCTTGTCGCAGCAGAGCGCGGTGCGCAACAACAACAATGAACAACGGCGC
TCGTCCGTGTTCTTCAGGCTCCCCGACCTCGACAAGATCCTCAAGGGCGA
CAACGCCAACAGCAGCAGCTCAGCAGAGGCCGTCGCCGGCGGCAGCAAGA
AGGATGTGCGCAGCGCCAGCAGAAGCGTCACCGGCAGCAAGGGTCACCAC
CAAGGCATGGGCGGCGGCGACGGGGACTTCGGGCAAAGCCTCGCGGCCAA
GCTCAGCCGGCCCGTTTCGGGCCGCAGGCGCGGCCGTCGGGCTTCCGTTG
CGCCCGGCGGTTCCTCGCCCGGGCGTACGAGAGAGGATCGCTTAGCAGCA
GCGGAAGAGGAAGCAAGGAACGCGGCCGCGGCGGCGGCGGAGAGGTCAAC
GTCCGTGTTGGATGATGAAGAGTCCCATGAAGAAGGTTCGGCTGGTACCG
CGCCTGCCGCTGCTGCGGCGGGGGGAGACGAAGGACCACGGTTCTTCGAA
TCGAAACGGGACAGCTTGCTGCTGACCGTTGGGGAGGAGGAGGAGGTGCT
GGCGCCGGCTGCTGCTGCTGCAGCCGAAGGTGATGCTTTGCACCAGAAGC
AGCAGCAAAAGGGTGATCGTTCGAGGGATCATAAGCGGCCGTCCCCAAGA
TCTTCGCCGAGAGCTCTCAGCGCCGGCCACAGGTATTTCGATGCGTTTTA
G
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Coding sequence (CDS) from alignment at Scaffold_365:174894..176344-

>EsuBft1099_4a-0001 ID=EsuBft1099_4a-0001|Name=EsuBft1099_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=990bp|location=Sequence derived from alignment at Scaffold_365:174894..176344- (Ectocarpus subulatus male Bft15b)
ATGTTCTCTTTCCTCAACCTTCAGAATTTTAACTTCGATTTCGTCGGAGA
CTCGATCTCCAACAGCGGGCGCACCGGCAAGAAGAAGACCAGCAGCAGCA
ATGGCAAGAGAGAGTCTGGCAAGCAGCTCTGGCTCTGGGAGTCGCACGGC
TCCTCCTCCTCCTCGCCGACGGCCAACAGCACTGCCAACATGACTCCGAG
GACCGAGCCCGTCGTCACCCCGCCGCCGAAGAGGGCGCCGTTGGATTGCC
CCGCGGCTCGCCCGGAGACGGAGAGGGCCAAGCGGCGCTCCTTGTCGCAG
CAGAGCGCGGTGCGCAACAACAACAATGAACAACGGCGCTCGTCCGTGTT
CTTCAGGCTCCCCGACCTCGACAAGATCCTCAAGGGCGACAACGCCAACA
GCAGCAGCTCAGCAGAGGCCGTCGCCGGCGGCAGCAAGAAGGATGTGCGC
AGCGCCAGCAGAAGCGTCACCGGCAGCAAGGGTCACCACCAAGGCATGGG
CGGCGGCGACGGGGACTTCGGGCAAAGCCTCGCGGCCAAGCTCAGCCGGC
CCGTTTCGGGCCGCAGGCGCGGCCGTCGGGCTTCCGTTGCGCCCGGCGGT
TCCTCGCCCGGGCGTACGAGAGAGGATCGCTTAGCAGCAGCGGAAGAGGA
AGCAAGGAACGCGGCCGCGGCGGCGGCGGAGAGGTCAACGTCCGTGTTGG
ATGATGAAGAGTCCCATGAAGAAGGTTCGGCTGGTACCGCGCCTGCCGCT
GCTGCGGCGGGGGGAGACGAAGGACCACGGTTCTTCGAATCGAAACGGGA
CAGCTTGCTGCTGACCGTTGGGGAGGAGGAGGAGGTGCTGGCGCCGGCTG
CTGCTGCTGCAGCCGAAGGTGATGCTTTGCACCAGAAGCAGCAGCAAAAG
GGTGATCGTTCGAGGGATCATAAGCGGCCGTCCCCAAGATCTTCGCCGAG
AGCTCTCAGCGCCGGCCACAGGTATTTCGATGCGTTTTAG
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