EsuBft1099_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1099_12a-0001
Unique NameEsuBft1099_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_365contigScaffold_365:242097..246531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1099_12
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length205
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-27_003460.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1099_12aEsuBft1099_12aEctocarpus subulatus male Bft15bgeneScaffold_365 242097..246531 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1099_12a-0001EsuBft1099_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_365 242541..245433 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1099_12a-0001-exonEsuBft1099_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_365 242097..242903 -
EsuBft1099_12a-0001-exonagat-exon-47624Ectocarpus subulatus male Bft15bexonScaffold_365 243213..243391 -
EsuBft1099_12a-0001-exonagat-exon-47623Ectocarpus subulatus male Bft15bexonScaffold_365 244144..244360 -
EsuBft1099_12a-0001-exonagat-exon-47625Ectocarpus subulatus male Bft15bexonScaffold_365 244753..245514 -
EsuBft1099_12a-0001-exonagat-exon-47626Ectocarpus subulatus male Bft15bexonScaffold_365 246439..246531 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1099_12a-0001-exonagat-three_prime_utr-958Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_365 242097..242540 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1099_12a-0001-cdsEsuBft1099_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_365 242541..242903 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1099_12a-0001-exonagat-five_prime_utr-600Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_365 245434..245514 -
EsuBft1099_12a-0001-exonagat-five_prime_utr-601Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_365 246439..246531 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1099_12a-0001 ID=EsuBft1099_12a-0001|Name=EsuBft1099_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2058bp|location=Sequence derived from alignment at Scaffold_365:242097..246531- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CATTGCGGTTCCGTGCGCTGGAGGGGCTACTGTCGCTGTGTTGTGCGCTA
CACATCAATAGTTGACCCTGTCAAGGCCCCGGATGAACGCAAGCTGCTCT
TGGAAACTAGGTACACATTTACCTGAAACTCCATCTGGTTCTCCCTTGGA
GCGGTGGTGACTCCCCGCGTCCTCATGCACCTACAACCCACCTCACTCCC
CCACCCGCTAGCCCGCCCGGCCGCTACGCACGACAACCGGGGCAGCAGGG
TAGTGGCGGTGTCAAGGGGCAGCCGGGCCCTGCCGGTGACGAAGCCAGCA
AGGGAAAACCAGAGGATGTCCCTCCGCGCTGGGCAACGGCGTTTCCAGCA
GCAATGTCCAGCAGCAACCTCCCGGGTGGCTTTCACGATGACTTCTATGG
CCGCGGCAGGAGCGGCGGGACGGGTCAACGAGGAAGCCGTAGCTGCGAGG
GCGACCAAGACAAACCCATCACGCGGTGGTGGAAAGAGCAAGGCTATGAA
CGGTAAAAAGAGCACCGGCGCCTTGCTGACCTGCGAGAGCCCGCTGTGCA
ACAAGACCTCGTCGTTTGCGCACCGGGGTCAGACACGGCGGCGCTTATGC
AAGCGCCACGCGTGGCCGGGTATGCAGAACGTGTACTACAAGTACTGCGA
TGCGGATTCGGGGCGGTGCCCCGAGCGAGCATCGTACGAATCGGCCGGAA
AATTGCGATGCCTGGAGCACTGCGAGCCCGAGATGCGGCCGAGGAACAAC
ATCTGCCAGGTTGAGGGCGGGGGTTGCGACCGGCAGTCGTCATTCGGGGT
GAAGGGCGGGAAGCCTATCCTTTGCACGCTGCACAAAGGAGCGGGCATGG
TGCAGGTGCGCACAAAGACGTGCAGGCACCCAGGGTGCGAAAAGACCCCG
AGCTACGGGTTTTCGTGCAAGTCGCGCGAGTGCTGCAAGCCGCACGCGCT
CGAGGGCATGGTCTACAACGCGGGGAGAAGGTGCCGCTTTCGCGGGTGCG
CCGCGCCCGGAGCGTTCAACTACCCCGGGGTCACTCGCGGAGGATCTTTC
TGCGATGACCACAAAGAGGTGTATACCTTGTATTTTCTTGTTTGTTCTTC
TGTTTGGCAGGAAGGCATGGTGGACAACACGCCGACGCAGTGCGAGGCTG
AAGGGTGCAACTACTCGGCCAGCTTCGGCGATATGGGGCAGCGGACGAGA
CGTTTTTGCGCCAGACACAAACTGGCAGGGATGCTGAGCTACCAGGAATT
GTGGGCCACGCAAACTGACGCCTCCAGCCCCCCCAAAACTACCGCCGCTT
CGGCGGCGGCAACGGCAGCAGCGGCGGGCATGGTTCATCTGTCGGCGGCG
GCACCGGCGACTGCATCGGCAACGTACACCGCGGCCGAGAGAGTAGAAGG
GATCGACCCACTCGCGGACGGGCATGGACCAATCGGCGCAGAAAGCGGCG
CAGCTGAATCTGCCCCAGTTTCGGTTGGAGAACGAAGCAGAGGTAATCAA
GGGGCCGCCACGACAGCGAGTGCTGATGCTGTTGGCGCTGGCGTTGGCGG
TGCTGGTTGTAGTGCTGATTGTGCTGTTGCTAATTTTGGCGCTGTTTCCG
ATGCTCCGACGTAAGAGATGCCTGCCGAGGTCGCAACCGCTCGGAGCAGC
AGCGATGCTCAACCAGGGGAGAGGCCACGCGAAGACACGCCGCCAGACGG
CAAGCAGCCGCCGGCACGTGACGAAGGTGATCTATCAAGCGCTGCGGCAT
TTGTGCGTCTCTCAGGTGCCAGTTCCGCCGGACTCACCGGCGGCTGTCGT
GCCGTGCCACCGCCTCCGACAGCACCTGGGTCCCCGGCCACACCCTCCAC
CCCTGCGACGGAACTCGCTTTGTTGGCCAAGGCTGCCGCTGCCGCTGCCG
CTGCACCCGCGCTCGGCACACCCGGGTCGTGTCCCAAACAAGGCAACCCT
GCCGCCGCTGCTGGTCTACTTGCGTCGAGGACTCCCGACACCCAAGCCCG
CGCCCACAACACGCCGAGGGCCATGTATGCCACTTCATCCACTGCTTCTG
CTGCTGCT
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protein sequence of EsuBft1099_12a-0001

>EsuBft1099_12 ID=EsuBft1099_12|Name=EsuBft1099_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=479bp
MHLQPTSLPHPLARPAATHDNRGSRVVAVSRGSRALPVTKPARENQRMSL
RAGQRRFQQQCPAATSRVAFTMTSMAAAGAAGRVNEEAVAARATKTNPSR
GGGKSKAMNGKKSTGALLTCESPLCNKTSSFAHRGQTRRRLCKRHAWPGM
QNVYYKYCDADSGRCPERASYESAGKLRCLEHCEPEMRPRNNICQVEGGG
CDRQSSFGVKGGKPILCTLHKGAGMVQVRTKTCRHPGCEKTPSYGFSCKS
RECCKPHALEGMVYNAGRRCRFRGCAAPGAFNYPGVTRGGSFCDDHKEVY
TLYFLVCSSVWQEGMVDNTPTQCEAEGCNYSASFGDMGQRTRRFCARHKL
AGMLSYQELWATQTDASSPPKTTAASAAATAAAAGMVHLSAAAPATASAT
YTAAERVEGIDPLADGHGPIGAESGAAESAPVSVGERSRGNQGAATTASA
DAVGAGVGGAGCSADCAVANFGAVSDAPT
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mRNA from alignment at Scaffold_365:242097..246531-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1099_12a-0001 ID=EsuBft1099_12a-0001|Name=EsuBft1099_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4435bp|location=Sequence derived from alignment at Scaffold_365:242097..246531- (Ectocarpus subulatus male Bft15b)
CATTGCGGTTCCGTGCGCTGGAGGGGCTACTGTCGCTGTGTTGTGCGCTA
CACATCAATAGTTGACCCTGTCAAGGCCCCGGATGAACGCAAGGTAAGTA
AATCCTGCTTTTTTCGTGCACAGACTTGGTTGGGGGTAAAAAACAACCCA
CCATGTAGATACGTTTGTTTTGGGCACGCCTACTCTAGAAAGGCCGCAGC
TACAACGGGGGTGTGCTGTTGTGTAGACCTGGTGATGTACTGTCTGTCGG
GCATGTCGCGGGTGCCAAGAAGCCAAGAAGGGNTGCACAGACTTGGTTGG
GGGTAAAAAACAACCCACCATGTAGATACGTTTGTTTTGGGCACGCCTNC
GGAGGGGCTACTGTCGCTGTGTTGTGCGCTACACATCAATAGTTGACCCT
GTCAAGGCCCCGGATGAACGCAAGGTAAGTAAATCCTGCTTTTTTCGTGC
ACAGACTTGGTTGGGGGTAAAAAACAACCCACCATGTAGATACGTTTTGT
TATGGGCACGCCCACTCTAGAAAGGCCGCAGCTACAACGGGGGTGTGCTG
TTGTGTAGACCTGGTGATGTACTGTCGGGCATGTCGCGGGTGCCAAGAAG
CCAAGAAGGGGGTGTGATAACCAAGGGCGTGTGACATCACTACCGCATAC
CTGCAGGGGTCGAAGTTGTGTAGTAGAAACTAGGGGGGGGTGTCAGCATC
GCCTGTAAAGAATTACAACTATTTGATTTGATACCTTGCCTGTAAGAACT
ACCGCGCAATGGTGCCGCACTTATAGGGCGCAGGGAATTGGTGATACTGT
ATGTAGCACTGATACTTCATGCTGGCTCCATCAACAGACAGCCTGGCGTC
TTAACAAACTTACCAGTCTGAACGAATGCCACTCCAGTGGTTGGTACTTT
TCTCGCGTTTCTGACTTCTTGCTCTCCCAATGTCCCTGCCGTCCATGATT
TGTCCCTCTGTCCCCCAGTCTAATGCTCCAGAGCTACGCGTGCATGTCCT
ATCGTCTCAAAACGCAGCTGCTCTTGGAAACTAGGTACACATTTACCTGA
AACTCCATCTGGTTCTCCCTTGGAGCGGTGGTGACTCCCCGCGTCCTCAT
GCACCTACAACCCACCTCACTCCCCCACCCGCTAGCCCGCCCGGCCGCTA
CGCACGACAACCGGGGCAGCAGGGTAGTGGCGGTGTCAAGGGGCAGCCGG
GCCCTGCCGGTGACGAAGCCAGCAAGGGAAAACCAGAGGATGTCCCTCCG
CGCTGGGCAACGGCGTTTCCAGCAGCAATGTCCAGCAGCAACCTCCCGGG
TGGCTTTCACGATGACTTCTATGGCCGCGGCAGGAGCGGCGGGACGGGTC
AACGAGGAAGCCGTAGCTGCGAGGGCGACCAAGACAAACCCATCACGCGG
TGGTGGAAAGAGCAAGGCTATGAACGGTAAAAAGAGCACCGGCGCCTTGC
TGACCTGCGAGAGCCCGCTGTGCAACAAGACCTCGTCGTTTGCGCACCGG
GGTCAGACACGGCGGCGCTTATGCAAGCGCCACGCGTGGCCGGGTATGCA
GAACGTGTACTACAAGTACTGCGATGCGGATTCGGGGCGGTGCCCCGAGC
GAGCATCGTACGAATCGGCCGGAAAATTGCGATGCCTGGAGCACTGCGAG
CCCGAGATGCGGCCGAGGAACAACATCTGCCAGGTTGAGGGCGGGGGTTG
CGACCGGCAGTCGTCATTCGGGGTGAAGGGCGGGAAGCCTATCCTTTGCA
CGCTGCACAAAGGAGCGGGCATGGTGCAGGTGTGGCTTTACAGCAGGTTC
TTCGGCGTGGTCGGCGTTGCAATTTGCTGCGCGGCGTAGGGCCAGGTGGC
GTCAGAGGCCGGGCTGTGCAGTGTGGCAGTATCGGAGAACATCGGCACGT
CTGAGTGTGCTTACCGTGGGGGTGAAGCTGGGACTAGTATTTTCTCACCA
AGAGCTCGTCTTGCCATTGTGGAGCCCCCCCTCCCCCCAGCTAGCGCCCC
GCGCTACGCTCCCCTCGTTTCACCTTTGTATTCTGCTCAAGCTACCCGCG
CCAGCGTGTAATTTCCACCCACCAAGACAACACCAATCATCCTGCTATGC
ACAGGTACCGGTGTGCGATTTGCGGTTCTTCCGACATATCCCCTTTTTTT
TCCCTCGGCGGCGAGGAGCAGGTGCGCACAAAGACGTGCAGGCACCCAGG
GTGCGAAAAGACCCCGAGCTACGGGTTTTCGTGCAAGTCGCGCGAGTGCT
GCAAGCCGCACGCGCTCGAGGGCATGGTCTACAACGCGGGGAGAAGGTGC
CGCTTTCGCGGGTGCGCCGCGCCCGGAGCGTTCAACTACCCCGGGGTCAC
TCGCGGAGGATCTTTCTGCGATGACCACAAAGAGGTGTGTGCGTTTGTTT
CTTCTTCGTCTGATGGTGTACCGGCGGGGGAACATATAATATATGACACA
GCCTCAGCCTCGCCGGTGCCACCAACACGTGCCGGTCCCGGTCCAGAGAG
TTCTACCTACCTACCGCGCCTACCAGCTGACCGATAGGTCTTGCAGCGGG
GCGAGAAAAAGCGAGCACGAAATCTGGTCGGCGCTCCCCACCGACACGAG
ACTGCGGAGGTCTATTTAGTGCGTGTATGTGTTTTTGGAGTACCTTTGGC
CGCGCGTGATCGCTGGTCAATTGAAAAGACGACGGTCTTTTTACGGGACA
ACAAACCTGAACACGCCCTCAAGTGTGTGCGTGCGTCTGTTTGTACCTAG
TATGTGCGTTATTTTTTTGTTTTTTGCGAGGTTGGCCTTGTGGAGGTGTA
GAGCAGTTGGGAATGTGTTCCGATGTACGTACGCGCGTTTTCGTGCAGCG
GCAGCGCGAATCAAATCGCGGTGCAGCACCGAGTAGAGACCATTCTTTGG
CGATTTCCTCCTTCTTTGGCACGAGCAGGTGGAGGGGTGACGTCGACATC
AGAGGCGTTCGGTGGCTAATCTACGACGGCGTCTATCGGGGGTTAATTGC
CGATATTTTTGTCTCGATTTTCGTCGCTTGTACGAGCAACTTCGCGGCTC
TTTGCCAGCTGGATGCTAATCCCGCCTCTTCCACAGCAACTGTCGCTGTA
ATTTCTTTCTGCCCCCCCCCGTTGTTGTCGTGGTACGTAGATACCTTGTA
TTTTCTTGTTTGTTCTTCTGTTTGGCAGGAAGGCATGGTGGACAACACGC
CGACGCAGTGCGAGGCTGAAGGGTGCAACTACTCGGCCAGCTTCGGCGAT
ATGGGGCAGCGGACGAGACGTTTTTGCGCCAGACACAAACTGGCAGGGAT
GCTGAGCTACCAGGAATTGGTGGGTGTGGCGAGAAGGTATTGGTAGGGTG
AATGTGTCTATCAGGGGTAACGGTTTGACCAGGCGGAGCCTGACAAGCCA
TCGCAGGAGAGGAGCGGTCTCATAGGACGACAGCAGTCAGCGTCATGCTT
TTTGGGATTATCATTCGTCAGTCGTTAGGTTGTCTACGAGCAGTCTCTCA
CGGGTTGAACTGCGTTGGTATTTTGCGTCGACCGTCATTCCGTTCAACCA
AACCAAACCAGAACAAAACCAGTTTACGTTGTTTTTGATGTCTCTCTTGT
TCGCCATATATCCGTTTGTATTTCTCAGTGGGCCACGCAAACTGACGCCT
CCAGCCCCCCCAAAACTACCGCCGCTTCGGCGGCGGCAACGGCAGCAGCG
GCGGGCATGGTTCATCTGTCGGCGGCGGCACCGGCGACTGCATCGGCAAC
GTACACCGCGGCCGAGAGAGTAGAAGGGATCGACCCACTCGCGGACGGGC
ATGGACCAATCGGCGCAGAAAGCGGCGCAGCTGAATCTGCCCCAGTTTCG
GTTGGAGAACGAAGCAGAGGTAATCAAGGGGCCGCCACGACAGCGAGTGC
TGATGCTGTTGGCGCTGGCGTTGGCGGTGCTGGTTGTAGTGCTGATTGTG
CTGTTGCTAATTTTGGCGCTGTTTCCGATGCTCCGACGTAAGAGATGCCT
GCCGAGGTCGCAACCGCTCGGAGCAGCAGCGATGCTCAACCAGGGGAGAG
GCCACGCGAAGACACGCCGCCAGACGGCAAGCAGCCGCCGGCACGTGACG
AAGGTGATCTATCAAGCGCTGCGGCATTTGTGCGTCTCTCAGGTGCCAGT
TCCGCCGGACTCACCGGCGGCTGTCGTGCCGTGCCACCGCCTCCGACAGC
ACCTGGGTCCCCGGCCACACCCTCCACCCCTGCGACGGAACTCGCTTTGT
TGGCCAAGGCTGCCGCTGCCGCTGCCGCTGCACCCGCGCTCGGCACACCC
GGGTCGTGTCCCAAACAAGGCAACCCTGCCGCCGCTGCTGGTCTACTTGC
GTCGAGGACTCCCGACACCCAAGCCCGCGCCCACAACACGCCGAGGGCCA
TGTATGCCACTTCATCCACTGCTTCTGCTGCTGCT
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Coding sequence (CDS) from alignment at Scaffold_365:242097..246531-

>EsuBft1099_12a-0001 ID=EsuBft1099_12a-0001|Name=EsuBft1099_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1440bp|location=Sequence derived from alignment at Scaffold_365:242097..246531- (Ectocarpus subulatus male Bft15b)
ATGCACCTACAACCCACCTCACTCCCCCACCCGCTAGCCCGCCCGGCCGC
TACGCACGACAACCGGGGCAGCAGGGTAGTGGCGGTGTCAAGGGGCAGCC
GGGCCCTGCCGGTGACGAAGCCAGCAAGGGAAAACCAGAGGATGTCCCTC
CGCGCTGGGCAACGGCGTTTCCAGCAGCAATGTCCAGCAGCAACCTCCCG
GGTGGCTTTCACGATGACTTCTATGGCCGCGGCAGGAGCGGCGGGACGGG
TCAACGAGGAAGCCGTAGCTGCGAGGGCGACCAAGACAAACCCATCACGC
GGTGGTGGAAAGAGCAAGGCTATGAACGGTAAAAAGAGCACCGGCGCCTT
GCTGACCTGCGAGAGCCCGCTGTGCAACAAGACCTCGTCGTTTGCGCACC
GGGGTCAGACACGGCGGCGCTTATGCAAGCGCCACGCGTGGCCGGGTATG
CAGAACGTGTACTACAAGTACTGCGATGCGGATTCGGGGCGGTGCCCCGA
GCGAGCATCGTACGAATCGGCCGGAAAATTGCGATGCCTGGAGCACTGCG
AGCCCGAGATGCGGCCGAGGAACAACATCTGCCAGGTTGAGGGCGGGGGT
TGCGACCGGCAGTCGTCATTCGGGGTGAAGGGCGGGAAGCCTATCCTTTG
CACGCTGCACAAAGGAGCGGGCATGGTGCAGGTGCGCACAAAGACGTGCA
GGCACCCAGGGTGCGAAAAGACCCCGAGCTACGGGTTTTCGTGCAAGTCG
CGCGAGTGCTGCAAGCCGCACGCGCTCGAGGGCATGGTCTACAACGCGGG
GAGAAGGTGCCGCTTTCGCGGGTGCGCCGCGCCCGGAGCGTTCAACTACC
CCGGGGTCACTCGCGGAGGATCTTTCTGCGATGACCACAAAGAGGTGTAT
ACCTTGTATTTTCTTGTTTGTTCTTCTGTTTGGCAGGAAGGCATGGTGGA
CAACACGCCGACGCAGTGCGAGGCTGAAGGGTGCAACTACTCGGCCAGCT
TCGGCGATATGGGGCAGCGGACGAGACGTTTTTGCGCCAGACACAAACTG
GCAGGGATGCTGAGCTACCAGGAATTGTGGGCCACGCAAACTGACGCCTC
CAGCCCCCCCAAAACTACCGCCGCTTCGGCGGCGGCAACGGCAGCAGCGG
CGGGCATGGTTCATCTGTCGGCGGCGGCACCGGCGACTGCATCGGCAACG
TACACCGCGGCCGAGAGAGTAGAAGGGATCGACCCACTCGCGGACGGGCA
TGGACCAATCGGCGCAGAAAGCGGCGCAGCTGAATCTGCCCCAGTTTCGG
TTGGAGAACGAAGCAGAGGTAATCAAGGGGCCGCCACGACAGCGAGTGCT
GATGCTGTTGGCGCTGGCGTTGGCGGTGCTGGTTGTAGTGCTGATTGTGC
TGTTGCTAATTTTGGCGCTGTTTCCGATGCTCCGACGTAA
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