EsuBft1099_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1099_11a-0001
Unique NameEsuBft1099_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_365contigScaffold_365:234248..236842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1099_11
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length200
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1099_11aEsuBft1099_11aEctocarpus subulatus male Bft15bgeneScaffold_365 234248..236842 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1099_11a-0001-exonagat-exon-47622Ectocarpus subulatus male Bft15bexonScaffold_365 234248..235815 -
EsuBft1099_11a-0001-exonagat-exon-47621Ectocarpus subulatus male Bft15bexonScaffold_365 236044..236164 -
EsuBft1099_11a-0001-exonEsuBft1099_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_365 236528..236842 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1099_11a-0001-cdsEsuBft1099_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_365 234248..235815 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1099_11a-0001EsuBft1099_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_365 234248..236842 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1099_11a-0001 ID=EsuBft1099_11a-0001|Name=EsuBft1099_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2004bp|location=Sequence derived from alignment at Scaffold_365:234248..236842- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATACCCTCCCACCAGGACACTATCGCAGTTGATGTTCCGGTGGCGGA
GCGATCAGGTCGTGCCGTATCTGTACATGAGTTGGACGTTCCCGAAGTTT
TGAATTTGGGCGATGGATGCCGCAGCAGGGCGTCTACGAAAGGCGTTGGC
GAGAAGAATGAAGATGACCCAACGGAGGTTGTCGCGTTGCGCGAGTTGGT
ACAACGCCAGCGGGAGGACCTGGAAACAGCAGCATTGATCGGACAAAGGC
TTCTAGACAGAGTCGAAGAACTCTCGGCTAGTCTTGAGGCGAGTGAACCA
AGCGCACACCAGTTGGCGGTGCGAGAGGAAAAGTGGCTGGCGGAGTGCGA
AAAGGACGCGCTCCGGAGAGATCTGGACAGCGCCACCCAACGTTGTGAGC
AGATGCAACAAGATACAACGACCGAGGCCCTCCCACGTACGTCATCGACA
AAGGGACACCTGTTCTTGTCGGCAGCTGAAGAACCTCAGGTTGAATATCT
TGATCTGTGGTCCCCAGCAGCCCACGCCAGGACCGGCGCCCGCTCCTCGC
TCTCCGACGATCGGCCGCTCTCTCCCGTCCTCGAGAACTCCCCTGACGCC
GCCGAGGATGCCGCAAGGCACGAGCAAGACCGGGAAGAGATCGGCCGCCT
GCGCCGGGCGGTCGAGGGCCTGGAGGAAGCCAACACCTCCCTGAGAGAAG
AGCTCACGGAGTCCCGTCTCGAGGCCACCGCTCTCAGACGCACCTCGACG
ACACAGAAAGAAGCGGCACTGGACCGGGTAATGAACGAAGCCATCGGGGA
TGATGGAGAAGAGCACCGGCAAGTACGCGCTGGTTGGGGCGCTCCGAACG
ATGGTCAGGAGGAAGATGAAGCAGAGGGAGATCGGCAACCAAGGTCGTTT
TTCTCCAGCAGTAGCTCCGGCGTCCAGGAGGAGGGGGCACCATTCGACGA
GACAGAAGCATGCCACGCAGGAGAACAAGACGGCCTGCAGCCGGAAGAGA
CGGGTGATGGAGGGCCACCAGGTTGCCGAGCGAGGCGCGAGTCGGGTGGT
GGTGGTGGTGAAGGGACTCACAGGAGAAAACAGTCTATCGAATCGATAGC
GTCGTCGAGGTCGTTTAGGTGCCGGTCGTCGTCAATGTTCAGAGACGCCC
AAGAGCAAGCCGAGCTGATCGAAGCCCTCCGCGCGCAGATCGCTCAGCTC
CGGCTCGAGGCGAAGGCTACGACGCGGGCCGCGGGGACAGAATTCCGGTG
GAGCGATAAAGCTGCGGCGTCGTACGAGCACGACGGTGGTGCCGGGCATC
GCCGCGGTGTGTGTTCGTCGGACGACGACAGCGGCAGCGATAGAGGCAGA
GATACATCTCGAGATGAAGACGCTGTCGGCGAAGAAGGTGGGAACGGTCG
TGAGAAAATCGGCAGCATGGATGAAGATGGACGTCGAGTCGATGAACACA
GGTCCAACCCGCTTCTCCGAGCGCGGGTAGACGAGCTGCAGGCAGAGCTC
GAGACGACAAAGCGCGCGCTTGAGGTGCTTCAGCGGCGAGCGCAGCAGGA
GCAGGCCGTGAGCGTCGAGCTGCAGAGAGAGCTTCTACGCCTTCACGGCA
CGAGGTACAACAGCGGCGCCGTGGCGGCAGCAGTCGCGCGAGTTTCAGCC
GGGACTCTGCGACCAGCCTCCTACACCGCGGGCCGTGCTTCCGAGGGTGG
AAGCGATGGAGGTAGCAGCAATCGTCGGGGTAGTGACAACAACGGCGGTC
GTGGCACGGGGCTGGAGCGTCGCATCGATTACACCATGTTTGAAGGAATG
GGCCGGCTCCATCCACTGTGGCGGATACTTTTTTGCGGGGGCTGCGGCGA
GACGGCGGGGTCTGGCGTGGACACGAGTTTCGAGGACTCGGGGGCGGTGA
ATGACGACGGCGTTGGTGATGTCAGGACGCTTTCTCCTGGCTCCTCGGAG
AGTGACGAAGAGACCTTTGCTGTACAGAGAGGAGAGGAAGGTGGCTTGAC
ATAG
back to top

protein sequence of EsuBft1099_11a-0001

>EsuBft1099_11 ID=EsuBft1099_11|Name=EsuBft1099_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=667bp
MIPSHQDTIAVDVPVAERSGRAVSVHELDVPEVLNLGDGCRSRASTKGVG
EKNEDDPTEVVALRELVQRQREDLETAALIGQRLLDRVEELSASLEASEP
SAHQLAVREEKWLAECEKDALRRDLDSATQRCEQMQQDTTTEALPRTSST
KGHLFLSAAEEPQVEYLDLWSPAAHARTGARSSLSDDRPLSPVLENSPDA
AEDAARHEQDREEIGRLRRAVEGLEEANTSLREELTESRLEATALRRTST
TQKEAALDRVMNEAIGDDGEEHRQVRAGWGAPNDGQEEDEAEGDRQPRSF
FSSSSSGVQEEGAPFDETEACHAGEQDGLQPEETGDGGPPGCRARRESGG
GGGEGTHRRKQSIESIASSRSFRCRSSSMFRDAQEQAELIEALRAQIAQL
RLEAKATTRAAGTEFRWSDKAAASYEHDGGAGHRRGVCSSDDDSGSDRGR
DTSRDEDAVGEEGGNGREKIGSMDEDGRRVDEHRSNPLLRARVDELQAEL
ETTKRALEVLQRRAQQEQAVSVELQRELLRLHGTRYNSGAVAAAVARVSA
GTLRPASYTAGRASEGGSDGGSSNRRGSDNNGGRGTGLERRIDYTMFEGM
GRLHPLWRILFCGGCGETAGSGVDTSFEDSGAVNDDGVGDVRTLSPGSSE
SDEETFAVQRGEEGGLT
back to top

mRNA from alignment at Scaffold_365:234248..236842-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1099_11a-0001 ID=EsuBft1099_11a-0001|Name=EsuBft1099_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2595bp|location=Sequence derived from alignment at Scaffold_365:234248..236842- (Ectocarpus subulatus male Bft15b)
ATGATACCCTCCCACCAGGACACTATCGCAGTTGATGTTCCGGTGGCGGA
GCGATCAGGTCGTGCCGTATCTGTACATGAGTTGGACGTTCCCGAAGTTT
TGAATTTGGGCGATGGATGCCGCAGCAGGGCGTCTACGAAAGGCGTTGGC
GAGAAGAATGAAGATGACCCAACGGAGGTTGTCGCGTTGCGCGAGTTGGT
ACAACGCCAGCGGGAGGACCTGGAAACAGCAGCATTGATCGGACAAAGGC
TTCTAGACAGAGTCGAAGAACTCTCGGCTAGTCTTGAGGCGAGTGAACCA
AGCGCACACCAGTTGGTGCCTTGGTTGTGTTTACATTCGGCTTCGCTCTA
AGCATCACGACTCAAGAGTAGCAACGGTTTCGTGGGACCAATGGCACTTT
CATTGGTGTAGCTCTACAAATCTTCAACCCCACTGGCGTCCCCAAAGCGC
ATTCTAAGTAGTCCCCCGGAACGGTTCAAATTCGTATGCATGATGGGACG
TAGTTATAGAGATGGAACTGGTGGCGCATCTCGCCGTACGTTCGCGCCAC
CAGTTCCCGTTTTGGTACCCCGATCTGATGCCGAATCAAACCGCATAATT
TCTTTTTCCACCTTTGATTTCTCATAGCCACTGTCACCCTGGACTTAGTT
GGCGAATGCGTTTCGCGGGCTCATGCAGGCGGTGCGAGAGGAAAAGTGGC
TGGCGGAGTGCGAAAAGGACGCGCTCCGGAGAGATCTGGACAGCGCCACC
CAACGTTGTGAGCAGATGCAACAAGATACAACGACCGAGGCCCTCCCACG
TACGTACTATTTCAAGCCCACGTCTAGATCGTCAGCGGAAATGAGGCTCA
CAAGCAAAATATATTTAGACGCGGCGGTAGTTGCCTTACGTGGGATCCGC
TTTGTTTACTCTGCGTGGTGTTCGAGATGCGTATCGTTTACAAAGAAACG
CATGAATGTCCTCCTGAGATGTACAGAAATCCTTACCGTGCACCCCTCCA
ACCCTGCCCCTCCCCCCCTCCCCCCAGGTACGTCATCGACAAAGGGACAC
CTGTTCTTGTCGGCAGCTGAAGAACCTCAGGTTGAATATCTTGATCTGTG
GTCCCCAGCAGCCCACGCCAGGACCGGCGCCCGCTCCTCGCTCTCCGACG
ATCGGCCGCTCTCTCCCGTCCTCGAGAACTCCCCTGACGCCGCCGAGGAT
GCCGCAAGGCACGAGCAAGACCGGGAAGAGATCGGCCGCCTGCGCCGGGC
GGTCGAGGGCCTGGAGGAAGCCAACACCTCCCTGAGAGAAGAGCTCACGG
AGTCCCGTCTCGAGGCCACCGCTCTCAGACGCACCTCGACGACACAGAAA
GAAGCGGCACTGGACCGGGTAATGAACGAAGCCATCGGGGATGATGGAGA
AGAGCACCGGCAAGTACGCGCTGGTTGGGGCGCTCCGAACGATGGTCAGG
AGGAAGATGAAGCAGAGGGAGATCGGCAACCAAGGTCGTTTTTCTCCAGC
AGTAGCTCCGGCGTCCAGGAGGAGGGGGCACCATTCGACGAGACAGAAGC
ATGCCACGCAGGAGAACAAGACGGCCTGCAGCCGGAAGAGACGGGTGATG
GAGGGCCACCAGGTTGCCGAGCGAGGCGCGAGTCGGGTGGTGGTGGTGGT
GAAGGGACTCACAGGAGAAAACAGTCTATCGAATCGATAGCGTCGTCGAG
GTCGTTTAGGTGCCGGTCGTCGTCAATGTTCAGAGACGCCCAAGAGCAAG
CCGAGCTGATCGAAGCCCTCCGCGCGCAGATCGCTCAGCTCCGGCTCGAG
GCGAAGGCTACGACGCGGGCCGCGGGGACAGAATTCCGGTGGAGCGATAA
AGCTGCGGCGTCGTACGAGCACGACGGTGGTGCCGGGCATCGCCGCGGTG
TGTGTTCGTCGGACGACGACAGCGGCAGCGATAGAGGCAGAGATACATCT
CGAGATGAAGACGCTGTCGGCGAAGAAGGTGGGAACGGTCGTGAGAAAAT
CGGCAGCATGGATGAAGATGGACGTCGAGTCGATGAACACAGGTCCAACC
CGCTTCTCCGAGCGCGGGTAGACGAGCTGCAGGCAGAGCTCGAGACGACA
AAGCGCGCGCTTGAGGTGCTTCAGCGGCGAGCGCAGCAGGAGCAGGCCGT
GAGCGTCGAGCTGCAGAGAGAGCTTCTACGCCTTCACGGCACGAGGTACA
ACAGCGGCGCCGTGGCGGCAGCAGTCGCGCGAGTTTCAGCCGGGACTCTG
CGACCAGCCTCCTACACCGCGGGCCGTGCTTCCGAGGGTGGAAGCGATGG
AGGTAGCAGCAATCGTCGGGGTAGTGACAACAACGGCGGTCGTGGCACGG
GGCTGGAGCGTCGCATCGATTACACCATGTTTGAAGGAATGGGCCGGCTC
CATCCACTGTGGCGGATACTTTTTTGCGGGGGCTGCGGCGAGACGGCGGG
GTCTGGCGTGGACACGAGTTTCGAGGACTCGGGGGCGGTGAATGACGACG
GCGTTGGTGATGTCAGGACGCTTTCTCCTGGCTCCTCGGAGAGTGACGAA
GAGACCTTTGCTGTACAGAGAGGAGAGGAAGGTGGCTTGACATAG
back to top

Coding sequence (CDS) from alignment at Scaffold_365:234248..236842-

>EsuBft1099_11a-0001 ID=EsuBft1099_11a-0001|Name=EsuBft1099_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2004bp|location=Sequence derived from alignment at Scaffold_365:234248..236842- (Ectocarpus subulatus male Bft15b)
ATGATACCCTCCCACCAGGACACTATCGCAGTTGATGTTCCGGTGGCGGA
GCGATCAGGTCGTGCCGTATCTGTACATGAGTTGGACGTTCCCGAAGTTT
TGAATTTGGGCGATGGATGCCGCAGCAGGGCGTCTACGAAAGGCGTTGGC
GAGAAGAATGAAGATGACCCAACGGAGGTTGTCGCGTTGCGCGAGTTGGT
ACAACGCCAGCGGGAGGACCTGGAAACAGCAGCATTGATCGGACAAAGGC
TTCTAGACAGAGTCGAAGAACTCTCGGCTAGTCTTGAGGCGAGTGAACCA
AGCGCACACCAGTTGGCGGTGCGAGAGGAAAAGTGGCTGGCGGAGTGCGA
AAAGGACGCGCTCCGGAGAGATCTGGACAGCGCCACCCAACGTTGTGAGC
AGATGCAACAAGATACAACGACCGAGGCCCTCCCACGTACGTCATCGACA
AAGGGACACCTGTTCTTGTCGGCAGCTGAAGAACCTCAGGTTGAATATCT
TGATCTGTGGTCCCCAGCAGCCCACGCCAGGACCGGCGCCCGCTCCTCGC
TCTCCGACGATCGGCCGCTCTCTCCCGTCCTCGAGAACTCCCCTGACGCC
GCCGAGGATGCCGCAAGGCACGAGCAAGACCGGGAAGAGATCGGCCGCCT
GCGCCGGGCGGTCGAGGGCCTGGAGGAAGCCAACACCTCCCTGAGAGAAG
AGCTCACGGAGTCCCGTCTCGAGGCCACCGCTCTCAGACGCACCTCGACG
ACACAGAAAGAAGCGGCACTGGACCGGGTAATGAACGAAGCCATCGGGGA
TGATGGAGAAGAGCACCGGCAAGTACGCGCTGGTTGGGGCGCTCCGAACG
ATGGTCAGGAGGAAGATGAAGCAGAGGGAGATCGGCAACCAAGGTCGTTT
TTCTCCAGCAGTAGCTCCGGCGTCCAGGAGGAGGGGGCACCATTCGACGA
GACAGAAGCATGCCACGCAGGAGAACAAGACGGCCTGCAGCCGGAAGAGA
CGGGTGATGGAGGGCCACCAGGTTGCCGAGCGAGGCGCGAGTCGGGTGGT
GGTGGTGGTGAAGGGACTCACAGGAGAAAACAGTCTATCGAATCGATAGC
GTCGTCGAGGTCGTTTAGGTGCCGGTCGTCGTCAATGTTCAGAGACGCCC
AAGAGCAAGCCGAGCTGATCGAAGCCCTCCGCGCGCAGATCGCTCAGCTC
CGGCTCGAGGCGAAGGCTACGACGCGGGCCGCGGGGACAGAATTCCGGTG
GAGCGATAAAGCTGCGGCGTCGTACGAGCACGACGGTGGTGCCGGGCATC
GCCGCGGTGTGTGTTCGTCGGACGACGACAGCGGCAGCGATAGAGGCAGA
GATACATCTCGAGATGAAGACGCTGTCGGCGAAGAAGGTGGGAACGGTCG
TGAGAAAATCGGCAGCATGGATGAAGATGGACGTCGAGTCGATGAACACA
GGTCCAACCCGCTTCTCCGAGCGCGGGTAGACGAGCTGCAGGCAGAGCTC
GAGACGACAAAGCGCGCGCTTGAGGTGCTTCAGCGGCGAGCGCAGCAGGA
GCAGGCCGTGAGCGTCGAGCTGCAGAGAGAGCTTCTACGCCTTCACGGCA
CGAGGTACAACAGCGGCGCCGTGGCGGCAGCAGTCGCGCGAGTTTCAGCC
GGGACTCTGCGACCAGCCTCCTACACCGCGGGCCGTGCTTCCGAGGGTGG
AAGCGATGGAGGTAGCAGCAATCGTCGGGGTAGTGACAACAACGGCGGTC
GTGGCACGGGGCTGGAGCGTCGCATCGATTACACCATGTTTGAAGGAATG
GGCCGGCTCCATCCACTGTGGCGGATACTTTTTTGCGGGGGCTGCGGCGA
GACGGCGGGGTCTGGCGTGGACACGAGTTTCGAGGACTCGGGGGCGGTGA
ATGACGACGGCGTTGGTGATGTCAGGACGCTTTCTCCTGGCTCCTCGGAG
AGTGACGAAGAGACCTTTGCTGTACAGAGAGGAGAGGAAGGTGGCTTGAC
ATAG
back to top