EsuBft1098_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1098_2a-0001
Unique Name	EsuBft1098_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_574	contig	Scaffold_574:188..6076 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	400682.PAC_15700047
ProteomeId	EsuBft1098_2
Protein domains	PTHR23274
Protein domains	IPR027417
Owner	apollo_admin@sb-roscoff.fr
Note	atp-dependent dna helicase pif1 os:danio rerio gn:pif1 pe:2 sv:1 [Automatic annotation]
Nb exon	4
Max annot lvl	33208\|Metazoa
Length	1779
Hectar predicted targeting category	other localisation
Evalue	1.32e-37
EggNOG OGs	2CC8B@1\|root,2S3BW@2759\|Eukaryota,3A3QP@33154\|Opisthokonta,3C1YH@33208\|Metazoa
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1098_2a	EsuBft1098_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_574 188..6076 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1098_2a-0001-exon	agat-exon-62898	Ectocarpus subulatus male Bft15b	exon	Scaffold_574 188..594 -
EsuBft1098_2a-0001-exon	agat-exon-62897	Ectocarpus subulatus male Bft15b	exon	Scaffold_574 2006..2330 -
EsuBft1098_2a-0001-exon	EsuBft1098_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_574 2504..2875 -
EsuBft1098_2a-0001-exon	agat-exon-62896	Ectocarpus subulatus male Bft15b	exon	Scaffold_574 5402..6076 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1098_2a-0001-cds	EsuBft1098_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_574 188..594 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1098_2a-0001	EsuBft1098_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_574 188..6076 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_574:188..6076-
coding sequence from alignment at Scaffold_574:188..6076-

spliced messenger RNA

>EsuBft1098_2a-0001 ID=EsuBft1098_2a-0001|Name=EsuBft1098_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1779bp|location=Sequence derived from alignment at Scaffold_574:188..6076- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGGCAACGGGCCTCACGTTACCCTTCTATACCCCACCACCTGCCGC
CCCCACACCCGCTGGTTCGTACAGTTGTCCGCGGTGCAAGAAGGACAAGA
AGAGTCCGAAGCTGTTCTCCGCCGACAACACCATGGATCCTGGGAGCGTA
CCCGTCGAGCTCCAGGGCCTGACCCAGACGGAGGAGATGCTCATCGCGCG
GTGCTGTCCGATCATGCGCGTCCTCCACCTCAAGGGTGGGCAGCTAGGGT
ACGGTGGCCATGTCGTCAACGTCGCTCAGGACATCAGTACCTTAGCCGCT
GCCCTCCCCAGGTTGGCCGCCGATGTACCGATCATCATCATCCGGAGGGA
GGGGCAGGAACCCGGCCAGCACAAGGACCTACACGTGCGGAGGGCTCGCG
TGCAACGGGCTTTGCAATGGCTCATTGCCAACAACCCGTACTACCGCGAC
ATCGTCCTTGACAACACGGCCATATCCCAGCTCCCCGTCGACGGGCAACT
ACGTGGACTGCGAACCACCGTCAGCGGGGGAGACTCGGAGCGTGACCTTG
GCCCTCGGGGGGAGGGGGGAGGGGAGGAGGACGGCGATACCCCCGAGGAC
ACGGAGTCCTTTATGGCTCCGGCAGGCAAGAGCATGCTCGAGGACCGCGC
GATTGAAGCAGCCCTGCGGAGGCAGACGGCAGCCGCCGCCAACGACGACG
ACCAGAGAGGCTTCATCGAACTGCTGCCGCGTGCGCGTGATGGACAGCTT
TGCGACGAGGACTGGGACCTCCTCCTGAAGAGACAGCCCAACCGCCTGAC
CGCCGCTGAGAAAGCGGCTTTCGAGGACGCAACGAGGCTCTTCTACTCCA
AGAAAGAGGTCAACAAGTACAACGGCAAGAAACTCCGGGAGCTGGACAAC
CCCGTCGCTCGTGTTAGCGCCGTCCACACGGGCGCGAACGCCAGGAGGGC
GACAGCAGACACCGCGGAGGGGCTCGAGAGGGACCTCTACTTAGCCAAGG
GAGCGAAGGTTATGCTCTCGAAGAACCTGTACCAACAAGTTGGGCTGGAC
GGGGGGACGCAGGTCAGGACGCAGCTGCCCCTTAGGCTCTGCTGGGCAAT
TACGATGCACAAGTCCCAGGGGCAGACTTTAGCCAAGGCCGTCATTGACT
TGGGGCCCAAGGAGGCCTGCACGGGGCTTACTTTCGTCTGTCTCAGTAGG
GCGAAGAGACTTGTGGACCTCATGGTAGAGCCCATGAGTTTCGACAGGAT
TGGTAACCTTGGAAATTCGCCGACGATGAAGGCTAGGCTGCAGGAAGAGG
TTAGACTTGGGGAGTTAGCACAGAGTACGAGGGTCAAGTACACGGACATG
GGCGTCTTCAGCGCCGTCGCGGGTGCGGGCGGAGGCGGTGGGGCGAGTGG
CGGCGGCGGCGGCGGCGGCGGCGACAATGCCGCCGCGGCCGCCACCAAGA
AGCGCAAGGCGTCAACCCCCGGGCCGGACACTAGCAAAAACAAGCTCAAC
TTACGGCAGCGGCACGAGCTCGTCAAAGAGGTCCAAGATGGTGGTGTCAG
GGCTAAAGTCGCGGTGAAGTACGGCGTCAGCAAGGGGTACGTCACAAAGC
TGATGATGCCCGACAACATCGCTAAGCTCAACAGGGCAGTCCAGATGGAG
CTCAACCCGGAGGCCCGCCGCGTCCCGGAACCGGTGGAGGCGGAGTTGGA
ACAGCGTGTTCCCAAGTGGATCAAGATTGCGCGAGAGCGATTCATGGTGA
GGGCTGACGTTGGACGCCGGGTCGGATAA

protein sequence of EsuBft1098_2a-0001

>EsuBft1098_2 ID=EsuBft1098_2|Name=EsuBft1098_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=592bp
MWATGLTLPFYTPPPAAPTPAGSYSCPRCKKDKKSPKLFSADNTMDPGSV
PVELQGLTQTEEMLIARCCPIMRVLHLKGGQLGYGGHVVNVAQDISTLAA
ALPRLAADVPIIIIRREGQEPGQHKDLHVRRARVQRALQWLIANNPYYRD
IVLDNTAISQLPVDGQLRGLRTTVSGGDSERDLGPRGEGGGEEDGDTPED
TESFMAPAGKSMLEDRAIEAALRRQTAAAANDDDQRGFIELLPRARDGQL
CDEDWDLLLKRQPNRLTAAEKAAFEDATRLFYSKKEVNKYNGKKLRELDN
PVARVSAVHTGANARRATADTAEGLERDLYLAKGAKVMLSKNLYQQVGLD
GGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSR
AKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKYTDM
GVFSAVAGAGGGGGASGGGGGGGGDNAAAAATKKRKASTPGPDTSKNKLN
LRQRHELVKEVQDGGVRAKVAVKYGVSKGYVTKLMMPDNIAKLNRAVQME
LNPEARRVPEPVEAELEQRVPKWIKIARERFMVRADVGRRVG

mRNA from alignment at Scaffold_574:188..6076-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1098_2a-0001 ID=EsuBft1098_2a-0001|Name=EsuBft1098_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5889bp|location=Sequence derived from alignment at Scaffold_574:188..6076- (Ectocarpus subulatus male Bft15b)
ATGTGGGCAACGGGCCTCACGTTACCCTTCTATACCCCACCACCTGCCGC
CCCCACACCCGCTGGTTCGTACAGTTGTCCGCGGTGCAAGAAGGACAAGA
AGAGTCCGAAGCTGTTCTCCGCCGACAACACCATGGATCCTGGGAGCGTA
CCCGTCGAGCTCCAGGGCCTGACCCAGACGGAGGAGATGCTCATCGCGCG
GTGCTGTCCGATCATGCGCGTCCTCCACCTCAAGGGTGGGCAGCTAGGGT
ACGGTGGCCATGTCGTCAACGTCGCTCAGGACATCAGTACCTTAGCCGCT
GCCCTCCCCAGGTTGGCCGCCGATGTACCGATCATCATCATCCGGAGGGA
GGGGCAGGAACCCGGCCAGCACAAGGACCTACACGTGCGGAGGGCTCGCG
TGCAACGGGCTTTGCAATGGCTCATTGCCAACAACCCGTACTACCGCGAC
ATCGTCCTTGACAACACGGCCATATCCCAGCTCCCCGTCGACGGGCAACT
ACGTGGACTGCGAACCACCGTCAGCGGGGGAGACTCGGAGCGTGACCTTG
GCCCTCGGGGGGAGGGGGGAGGGGAGGAGGACGGCGATACCCCCGAGGAC
ACGGAGTCCTTTATGGCTCCGGCAGGCAAGAGCATGCTCGAGGACCGCGC
GATTGAAGCAGCCCTGCGGAGGCAGGTGAGGGAGAGCGGGGCGGATGTTC
CGGTCAACGCCTGGCCTGGGATGGAGGCGACCGCCCTGAACGAGTTCAAG
ACAACAGGCCTCGCGTCCATGGCCTTCCCCGCCCTCTTCCNNNNNNNNNN
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NNNNNNNNNNNNNNNNNGGACGTCTTCATCCTTGACAGAGTTCAGCGGCA
GACGGCAGCCGCCGCCAACGACGACGACCAGAGAGGCTTCATCGAACTGC
TGCCGCGTGCGCGTGATGGACAGCTTTGCGACGAGGACTGGGACCTCCTC
CTGAAGAGACAGCCCAACCGCCTGACCGCCGCTGAGAAAGCGGCTTTCGA
GGACGCAACGAGGCTCTTCTACTCCAAGAAAGAGGTCAACAAGTACAACG
GCAAGAAACTCCGGGAGCTGGACAACCCCGTCGCTCGTGTTAGCGCCGTC
CACACGGGCGCGAACGCCAGGAGGGCGACAGCAGACACCGCGGAGGGGCT
CGAGAGGGACCTCTACTTAGCCAAGGGAGCGAAGGTTATGCTCTCGAAGA
ACCTGTACCAACAAGTTGGGCTGGTGAACGGCATTAGAGGCGAAGTCGTC
GAGTTGGTGTGCGCAGATGACGGCCCCCGCCGAAGCTCCCCCTTTACGTT
GTCGTCAAGTTTGAAGGGTACTCGGGGGGGGAATGGTCGTCTCAGGAGAG
GTATAGACGTTGTGTCCCTATTTCTCCCGTCGACACCACCTGGCAGGACG
GGGGGACGCAGGTCAGGACGCAGCTGCCCCTTAGGCTCTGCTGGGCAATT
ACGATGCACAAGTCCCAGGGGCAGACTTTAGCCAAGGCCGTCATTGACTT
GGGGCCCAAGGAGGCCTGCACGGGGCTTACTTTCGTCTGTCTCAGTAGGG
CGAAGAGACTTGTGGACCTCATGGTAGAGCCCATGAGTTTCGACAGGATT
GGTAACCTTGGAAATTCGCCGACGATGAAGGCTAGGCTGCAGGAAGAGGT
TAGACTTGGGGAGTTAGCACAGAGTACGAGGGTCAAGTACACGGACATGG
GCGTCTTCAGCGCCGTCGCGGGTAACCAATGACGTGAATTGCAAAGAGAA
AAAGAAGAAGAAAGGGTCTCTTCCACCTCCCGCGGACGCACACGTCTGAC
GACAGTTACATCTATCAGCTGTCGCTCGTTTTAGCGACAGCTACTATATC
TTTTCAGTGGACCCCGCTTTAAGGAAATCAAAATGAAGGAAACTCCCCGG
GTAAAGGAAACAATTTTTCGCCAAACACAATGCCCCGCAGAATGTAAAAT
ATACGGGGGGTTCCGTATTCTAGTCGGCGGACCCCCCTTAAACGCCAGCA
GGGAGGTCTGCTGCTTCACCTGCTGTCTGCGGTATGCAAAGATTCGTTTC
ACCTACCGGTGCGTCCTCTGCACCTGGGTTAAAACGGTGTGGGGAACCCA
CGTGCACGATCACGAAGCTCGTGTGGGGTATCCACACATGCCCGTGCGGA
CGATGGATGCACGCGTTTTGTGGTCGCGGCATCGGGAAGGAAGGCTACGG
ACAGCAGAGGGAGTGCACGGAATATCAGAAGACAGCACCCGGAAGCAAGA
CCGGCAGCTCCAGCAGTCCCATGGAAGTGGATGATGATGACGAGCAGGAG
AAAAGCAGGTGACTTACTGGTGTACAGCAGTCCTTCGTAGCGGGGCAATC
TAGTGCTGCTGCTGCTGTACAGAGCGGAGCGTCTACCTGCTGTAGTGCTG
CACGCATCGGCCAAATCTGATTGACCGTCAATCCAGGGCATGTTAATGCA
CCGCCCTCCGTTCCTATTTGGGTTCATACTTCACACGCGACAAAGTGTAG
CGTTGTTTTGTACAAAATCTTGACTCCCTGTGCTGCGGCAAAAAAAATAC
ATGTGCAAAAAACATGTGTCAAAACATGCGTAGAGTATGTGTGACACACA
CACACGAAAATCGAAGGCGAAACAGCGAGACGGCGCCCGTGCTGGGATGG
AATCGTCCTTGTTCGTTCCCAGCAGTTCTCTCTGGCGCGTAGACTACATG
TCTGTGCTGCTGTGATATTGCGTGCACGTGCTGCTCCGCGGAATACTTTT
CGCACATCACAGGAGGTTCTTTGTTGTTGGTGCTGTGGGCATGGAGAAAC
ATAAACCATTCCCTCTTTTTTTATTGTCGAAAATTCTTGCGTTAGATGGT
GTGTGCGCAAAGAAGATAGAAATTTGTCGAGCAAACACGAGGTTACCTTT
TGTATGTATACGACAAGACGCTCGTATGTACCGGTGCACCCGTGTGTGCC
GCTGCTGCGCAATAGTGGGCTATGCTGCCCCAGCGAAACACACGTGTTCT
ACTATCATCTGCAATCAAAACTACATTCGTGACCACCTCATGGAGTCTGA
TTATTGTCTCTTTTCGTTTCCACTACGTACCGCAGCACGGCACAGCAGCC
GGCACGGAGCAAGAAGCGCGAAGGCGATGCAGGTGCGGGCGGAGGCGGTG
GGGCGAGTGGCGGCGGCGGCGGCGGCGGCGGCGACAATGCCGCCGCGGCC
GCCACCAAGAAGCGCAAGGCGTCAACCCCCGGGCCGGACACTAGCAAAAA
CAAGCTCAACTTACGGCAGCGGCACGAGCTCGTCAAAGAGGTCCAAGATG
GTGGTGTCAGGGCTAAAGTCGCGGTGAAGTACGGCGTCAGCAAGGGGTAC
GTCACAAAGCTGATGATGCCCGACAACATCGCTAAGCTCAACAGGGCAGT
CCAGATGGAGCTCAACCCGGAGGCCCGCCGCGTCCCGGAACCGGTGGAGG
CGGAGTTGGAACAGCGTGTTCCCAAGTGGATCAAGATTGCGCGAGAGCGA
TTCATGGTGAGGGCTGACGTTGGACGCCGGGTCGGATAA

Coding sequence (CDS) from alignment at Scaffold_574:188..6076-

>EsuBft1098_2a-0001 ID=EsuBft1098_2a-0001|Name=EsuBft1098_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1779bp|location=Sequence derived from alignment at Scaffold_574:188..6076- (Ectocarpus subulatus male Bft15b)
ATGTGGGCAACGGGCCTCACGTTACCCTTCTATACCCCACCACCTGCCGC
CCCCACACCCGCTGGTTCGTACAGTTGTCCGCGGTGCAAGAAGGACAAGA
AGAGTCCGAAGCTGTTCTCCGCCGACAACACCATGGATCCTGGGAGCGTA
CCCGTCGAGCTCCAGGGCCTGACCCAGACGGAGGAGATGCTCATCGCGCG
GTGCTGTCCGATCATGCGCGTCCTCCACCTCAAGGGTGGGCAGCTAGGGT
ACGGTGGCCATGTCGTCAACGTCGCTCAGGACATCAGTACCTTAGCCGCT
GCCCTCCCCAGGTTGGCCGCCGATGTACCGATCATCATCATCCGGAGGGA
GGGGCAGGAACCCGGCCAGCACAAGGACCTACACGTGCGGAGGGCTCGCG
TGCAACGGGCTTTGCAATGGCTCATTGCCAACAACCCGTACTACCGCGAC
ATCGTCCTTGACAACACGGCCATATCCCAGCTCCCCGTCGACGGGCAACT
ACGTGGACTGCGAACCACCGTCAGCGGGGGAGACTCGGAGCGTGACCTTG
GCCCTCGGGGGGAGGGGGGAGGGGAGGAGGACGGCGATACCCCCGAGGAC
ACGGAGTCCTTTATGGCTCCGGCAGGCAAGAGCATGCTCGAGGACCGCGC
GATTGAAGCAGCCCTGCGGAGGCAGACGGCAGCCGCCGCCAACGACGACG
ACCAGAGAGGCTTCATCGAACTGCTGCCGCGTGCGCGTGATGGACAGCTT
TGCGACGAGGACTGGGACCTCCTCCTGAAGAGACAGCCCAACCGCCTGAC
CGCCGCTGAGAAAGCGGCTTTCGAGGACGCAACGAGGCTCTTCTACTCCA
AGAAAGAGGTCAACAAGTACAACGGCAAGAAACTCCGGGAGCTGGACAAC
CCCGTCGCTCGTGTTAGCGCCGTCCACACGGGCGCGAACGCCAGGAGGGC
GACAGCAGACACCGCGGAGGGGCTCGAGAGGGACCTCTACTTAGCCAAGG
GAGCGAAGGTTATGCTCTCGAAGAACCTGTACCAACAAGTTGGGCTGGAC
GGGGGGACGCAGGTCAGGACGCAGCTGCCCCTTAGGCTCTGCTGGGCAAT
TACGATGCACAAGTCCCAGGGGCAGACTTTAGCCAAGGCCGTCATTGACT
TGGGGCCCAAGGAGGCCTGCACGGGGCTTACTTTCGTCTGTCTCAGTAGG
GCGAAGAGACTTGTGGACCTCATGGTAGAGCCCATGAGTTTCGACAGGAT
TGGTAACCTTGGAAATTCGCCGACGATGAAGGCTAGGCTGCAGGAAGAGG
TTAGACTTGGGGAGTTAGCACAGAGTACGAGGGTCAAGTACACGGACATG
GGCGTCTTCAGCGCCGTCGCGGGTGCGGGCGGAGGCGGTGGGGCGAGTGG
CGGCGGCGGCGGCGGCGGCGGCGACAATGCCGCCGCGGCCGCCACCAAGA
AGCGCAAGGCGTCAACCCCCGGGCCGGACACTAGCAAAAACAAGCTCAAC
TTACGGCAGCGGCACGAGCTCGTCAAAGAGGTCCAAGATGGTGGTGTCAG
GGCTAAAGTCGCGGTGAAGTACGGCGTCAGCAAGGGGTACGTCACAAAGC
TGATGATGCCCGACAACATCGCTAAGCTCAACAGGGCAGTCCAGATGGAG
CTCAACCCGGAGGCCCGCCGCGTCCCGGAACCGGTGGAGGCGGAGTTGGA
ACAGCGTGTTCCCAAGTGGATCAAGATTGCGCGAGAGCGATTCATGGTGA
GGGCTGACGTTGGACGCCGGGTCGGATAA