EsuBft1097_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1097_9a-0001
Unique NameEsuBft1097_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_482contigScaffold_482:112..2767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1097_9
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length240
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1097_9aEsuBft1097_9aEctocarpus subulatus male Bft15bgeneScaffold_482 112..2767 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1097_9a-0001EsuBft1097_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_482 112..290 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1097_9a-0001-exonagat-exon-49355Ectocarpus subulatus male Bft15bexonScaffold_482 112..148 +
EsuBft1097_9a-0001-exonagat-exon-49353Ectocarpus subulatus male Bft15bexonScaffold_482 217..916 +
EsuBft1097_9a-0001-exonEsuBft1097_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_482 1002..2578 +
EsuBft1097_9a-0001-exonagat-exon-49354Ectocarpus subulatus male Bft15bexonScaffold_482 2675..2767 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1097_9a-0001-cdsEsuBft1097_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_482 112..148 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1097_9a-0001-exonagat-three_prime_utr-951Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_482 291..916 +
EsuBft1097_9a-0001-exonagat-three_prime_utr-952Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_482 1002..2578 +
EsuBft1097_9a-0001-exonagat-three_prime_utr-953Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_482 2675..2767 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1097_9a-0001 ID=EsuBft1097_9a-0001|Name=EsuBft1097_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2407bp|location=Sequence derived from alignment at Scaffold_482:112..2767+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAAGCGAGAGGCAGCGGGGTTCCAGCAGCCAGGAGGTGCAGGAGAT
GATGGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGGCGTGGAAGGCGCCC
TGGTGCGGGATGTGGAGGTCCCTGCTGCAGGTGGGTTTGGTGCATTCCAA
GACACCAACTCTCTTCGTAGTACGTTCGGCAGTGCTTGCGTACAGCAGTC
TGCTGCCGCTGGAGACACTGGTGAGAGTTTCACAGCAACCGATCAATCCA
TTCAGGGGAGGTCGGGTGGGGAATGCGGCACGGCGGAAGGGTCATGCCCA
CTGTTCTGCCTTGCTGTAGTAGCGGGCGGGGCGCACAGAAGTCGCCGGAA
TTGATGGTGCAACAGAACGGACGGAGGGCCGTGAAGTCGCGCAGTTTTGG
CGCGAATTCCATCTGCGGTAAGGCGGTGGAGCACCAGGACGGTAGAGAGA
CCGTTGGGCAGGATTGCCGGAGACACTCAACCATGGATCGACCGCGCGAC
GGCGCGGGGGGGGGTGGGCGCCGTACATGCTTGATGCTGGCGGTGTTTTG
TTAAGTCGATCCAAGGCCGGCAGTAGAGGCCGGGTACGCCCTACCACGGT
TGACACGCGCGACGGCGCGTCGGGGGGTGGGCGCCGATCACGCGGGAGCG
GGCGGCGTTTTTTGACCACAGCACGGACGGAGGGGCCGGGCCGTGGCTGT
TCTGCCTCGTCATAGGAGCGGGGGGAGTAGCATATTAAGTCGCGCGGAGG
TGGCGCGCAACCATCAGCCGGAGGTGGGTGGTGGAACGGGGCACAGCTAA
GTGGGTGTCATCAAAGTCGCGTGGGGAGGTGCCGCGCGCATTTCATCAGC
CGGGAACGAGCGGTGGAGACAAGAATGCGTCAGGATGGACGTGAGGAATT
AAAGGCGTGCTTCGCCATCAAGATGTGTTGGTGGAGTAGTTGGAATAAGC
TTGGATTTTGTTGTCTTGTTTTGTGTGGAGGTACCAGTTTGAGGTCGTGA
TGAAATCAAGCAACTTGTATTCGAAGAAATTCTGTTCACTGTTGCGTGTT
TCTTTCCGCCGTCATTTGCGCGTTGTCTTGCACCCAAATCGTGGTTGTTC
TGAATGTTTGTGTTCGTCGTTATGCCATTAGTGCATCCTTCGCCGGTGAC
GTTGTGTTGCTGGTGATGATGGCAAAGTGTCGGGGGGTAGAGACGTTCAC
GTTGGTAGAATTTGCCACCATCACTCATGTGTGGGGGCTACGCGGTTATA
TGTGACCCACGGCCTAAGTAGGAGGCGCAACAAGTGTTTTGTTTACCTGA
GTTGTTGCAGAACAAGGGAGGGTGGAAACGGGCGTGTTTCTTTTGAGAAT
GTTACGCTTGAAGAGTACGCCCGGTCTTGGTATTATGCAACTTGACAGGT
TGGTGTGTCGGGCAGGTATGCAGTTGTTAGTGGAAGTCGATTTTGTTTTC
ACGTACGGAAGCATGTTGGTTGTGTCTGTTTTGGGAAGCGACATCTAGGT
GATGGCCATGTGCGTGTTCCTCTGGGCGCCGGTGTTGCGCAAGGGAGGGC
ACTAGGCTTAGGTTCCTGGTGTGCTTGTCTATAATGCAGCCAGCGTAGAT
GCTTGGGGTTCGTAGTACAGCGTTACCAAGTTGTGGGGGGGCGTTTGTGT
TTTGCGTAGTTGTGCTTGAAGGTTCAGTAGCAAGTTGATGTATCCTTGAT
TGAAGGAGAACTGAGGATTGATTTGGTAGTTTGCAGATGGTGGACCTTGT
TTGAAGCAGGCTACATTCGGCAGGTTGTATATTTCTCAAAAGCGGGCATC
CTTTGGAGAATCGAGTTTGATTGGTTTTTCAGTTGGAAACAGGTCATGAT
TTTGAGTTCGTGTAGAATTGCAGATGGTTGAACCGAAGGCAGAGAGAACG
TACCTGTTCGATGCAGTTTTCGTGTGGAATGCAGATAGACAGGGAGGGCG
TTGCCTGTATGTGTGTGACACCTGAAGAATCAGTTGGTGCTGCACAGCAA
GGAGTTCGTTCCATCATGTCGGAAGGATTTGTCAGAGGCGTTGCTCGAGG
TAGTAGAGCGTTGCCTAGAATTTGTAATCCGAGCGTCTGGAGTGGTTTAT
CTTTGTCTTCTTGCAGTACGGCCGTTGGAATCATTGGTGATATGGGCGGC
TATTGGATTTTGTTTGAGCCGTTGGAATCTTTCGTGATATGATCGGCGTG
AGGCGTTGAATTTCTGAGGGGTTTTGATCCGGTGGCCGGGTTTCCCCTTT
ACTTTTGGTTTGTCTCGAAAAGTAGCCGTTACGTAGGACGCAGCTGGGAC
AACTTGAAGGGTATGTGCTGAGAGGCTTTGGATGATAGTGCGGAGTCCCC
GTGTTCT
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protein sequence of EsuBft1097_9a-0001

>EsuBft1097_9 ID=EsuBft1097_9|Name=EsuBft1097_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=37bp
MPSERQRGSSSQEVQEMMGXXXXXXXXXXXXXXXXXX
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mRNA from alignment at Scaffold_482:112..2767+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1097_9a-0001 ID=EsuBft1097_9a-0001|Name=EsuBft1097_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2656bp|location=Sequence derived from alignment at Scaffold_482:112..2767+ (Ectocarpus subulatus male Bft15b)
ATGCCAAGCGAGAGGCAGCGGGGTTCCAGCAGCCAGGGTACGCAATTCTG
AACTGGACGCTTTCTGACTGGAACGGAGCAGTAACTGAGCGAGTAGAGAT
GACAGAGGTGCAGGAGATGATGGGCNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CGGGCGTGGAAGGCGCCCTGGTGCGGGATGTGGAGGTCCCTGCTGCAGGT
GGGTTTGGTGCATTCCAAGACACCAACTCTCTTCGTAGTACGTTCGGCAG
TGCTTGCGTACAGCAGTCTGCTGCCGCTGGAGACACTGGTGAGAGTTTCA
CAGCAACCGATCAATCCATTCAGGGGAGGTCGGGTGGGGAATGCGGCACG
GCGGAAGGGTCATGCCCACTGTTCTGCCTTGCTGTAGTAGCGGGCGGGGC
GCACAGAAGTCGCCGGAATTGATGGTGCAACAGAACGGACGGAGGGCCGT
GAAGTCGCGCAGTTTTGGCGCGAATTCCATCTGCGGTAAGGCGGTGGAGC
ACCAGGACGGTAGAGAGACCGTTGGGCAGGATTGCCGGAGACACTCAACC
ATGGATCGACCGCGCGACGGCGCGGGGGGGGGTGGGCGCCGTACATGCTT
GATGCTGGCGGTGTTTTGTTAAGTCGATCCAAGGCCGGCAGTAGAGGCCG
GGTACGCCCTACCACGGTTGACACGCGCGACGGCGCGTCGGGGGGTGGGC
GCCGATCACGCGGGAGCGGGCGGCGTTTTTTGACCACAGCACGGACGGAG
GGGCCGTGGCTGCTTTGCCTCGTCGTCGGAACGGGGGGGGCAGCATTATA
AGGCGCGCGGAGGTGGCGCGCAAACCCAGCACGGACGGAGGGGCCGTGGC
TGTTCTGCCTCGTCATAGGAGCGGGGGGAGTAGCATATTAAGTCGCGCGG
AGGTGGCGCGCAACCATCAGCCGGAGGTGGGTGGTGGAACGGGGCACAGC
TAAGTGGGTGTCATCAAAGTCGCGTGGGGAGGTGCCGCGCGCATTTCATC
AGCCGGGAACGAGCGGTGGAGACAAGAATGCGTCAGGATGGACGTGAGGA
ATTAAAGGCGTGCTTCGCCATCAAGATGTGTTGGTGGAGTAGTTGGAATA
AGCTTGGATTTTGTTGTCTTGTTTTGTGTGGAGGTACCAGTTTGAGGTCG
TGATGAAATCAAGCAACTTGTATTCGAAGAAATTCTGTTCACTGTTGCGT
GTTTCTTTCCGCCGTCATTTGCGCGTTGTCTTGCACCCAAATCGTGGTTG
TTCTGAATGTTTGTGTTCGTCGTTATGCCATTAGTGCATCCTTCGCCGGT
GACGTTGTGTTGCTGGTGATGATGGCAAAGTGTCGGGGGGTAGAGACGTT
CACGTTGGTAGAATTTGCCACCATCACTCATGTGTGGGGGCTACGCGGTT
ATATGTGACCCACGGCCTAAGTAGGAGGCGCAACAAGTGTTTTGTTTACC
TGAGTTGTTGCAGAACAAGGGAGGGTGGAAACGGGCGTGTTTCTTTTGAG
AATGTTACGCTTGAAGAGTACGCCCGGTCTTGGTATTATGCAACTTGACA
GGTTGGTGTGTCGGGCAGGTATGCAGTTGTTAGTGGAAGTCGATTTTGTT
TTCACGTACGGAAGCATGTTGGTTGTGTCTGTTTTGGGAAGCGACATCTA
GGTGATGGCCATGTGCGTGTTCCTCTGGGCGCCGGTGTTGCGCAAGGGAG
GGCACTAGGCTTAGGTTCCTGGTGTGCTTGTCTATAATGCAGCCAGCGTA
GATGCTTGGGGTTCGTAGTACAGCGTTACCAAGTTGTGGGGGGGCGTTTG
TGTTTTGCGTAGTTGTGCTTGAAGGTTCAGTAGCAAGTTGATGTATCCTT
GATTGAAGGAGAACTGAGGATTGATTTGGTAGTTTGCAGATGGTGGACCT
TGTTTGAAGCAGGCTACATTCGGCAGGTTGTATATTTCTCAAAAGCGGGC
ATCCTTTGGAGAATCGAGTTTGATTGGTTTTTCAGTTGGAAACAGGTCAT
GATTTTGAGTTCGTGTAGAATTGCAGATGGTTGAACCGAAGGCAGAGAGA
ACGTACCTGTTCGATGCAGTTTTCGTGTGGAATGCAGATAGACAGGGAGG
GCGTTGCCTGTATGTGTGTGACACCTGAAGAATCAGTTGGTGCTGCACAG
CAAGGAGTTCGTTCCATCATGTCGGAAGGATTTGTCAGAGGCGTTGCTCG
AGGTAGTAGAGCGTTGCCTAGAATTTGTAATCCGAGCGTCTGGAGTGGTT
TATCTTTGTCTTCTTGCAGTACGGCCGTTGGAATCATTGGTGATATGGGC
GGCTATTGGATTTTGTTTGAGCCGTTGGAATCTTTCGTGATATGATCGGC
GTGAGGCGTTGAATTTCTGAGGGGTTTTGATCCGGTGGCCGGGTTTCCCC
TTTACTTTTGGTTTGTCGTCGTGTTTCTGTTTGTCGGACGTATTTTCGAC
GCACTGGAGGTTCTTCACTGGCGTAAAGAACCAGGGAGGGTGTTCGTGCG
TAGAAGTAGATAGTCGAAAAGTAGCCGTTACGTAGGACGCAGCTGGGACA
ACTTGAAGGGTATGTGCTGAGAGGCTTTGGATGATAGTGCGGAGTCCCCG
TGTTCT
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Coding sequence (CDS) from alignment at Scaffold_482:112..2767+

>EsuBft1097_9a-0001 ID=EsuBft1097_9a-0001|Name=EsuBft1097_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=111bp|location=Sequence derived from alignment at Scaffold_482:112..2767+ (Ectocarpus subulatus male Bft15b)
ATGCCAAGCGAGAGGCAGCGGGGTTCCAGCAGCCAGGAGGTGCAGGAGAT
GATGGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNN
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