EsuBft1097_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1097_8a-0001
Unique NameEsuBft1097_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_482contigScaffold_482:8397..9008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1097_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length61
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1097_8aEsuBft1097_8aEctocarpus subulatus male Bft15bgeneScaffold_482 8397..9008 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1097_8a-0001-exonEsuBft1097_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_482 8397..9008 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1097_8a-0001-exonagat-five_prime_utr-595Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_482 8397..8572 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1097_8a-0001-cdsEsuBft1097_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_482 8573..8839 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1097_8a-0001-exonagat-three_prime_utr-950Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_482 8840..9008 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1097_8a-0001EsuBft1097_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_482 8573..8839 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1097_8a-0001 ID=EsuBft1097_8a-0001|Name=EsuBft1097_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=612bp|location=Sequence derived from alignment at Scaffold_482:8397..9008+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGAAAAGAGGGAGCTGGGATTTTTTGGGGCTTGCTCCTTTCACGGTTCCG
AGGAAAAACGCCCCGCTTTTTCCGGGCAGCCGAAGCAGACACCGGTCACG
CGTGCTGCCTTCATCACACCACACCTAGACAGCACCCACAACACCCCAAA
AAGCTTCCCACGGCAAGTCGACCACCATGGCTGAGCGCGGGAAGCGCCAG
GATCCCACAGACCCCGCACCGCAACGCTGGGAGAAGCGCCGTCGACGAGC
TATCGACGAGGACAATGCAGCCCAGGAAGACAAGAGATTCACGGTCCTGG
GTCTTCTGAGGGCCGTAGTAGTGGCGACGGGCGTGGTGGCAGCAGGAGAA
GCTCATCGTGCCCACTGCCCTCAGGAACGAACGGGAGCCCATCTACGAGC
CGAAGCGACTTCCGTGGGCCCAACACGAGGCGGACCTCGATGAACGGCGC
GGCTGGCGGCGGTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNN
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protein sequence of EsuBft1097_8a-0001

>EsuBft1097_8 ID=EsuBft1097_8|Name=EsuBft1097_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=88bp
MAERGKRQDPTDPAPQRWEKRRRRAIDEDNAAQEDKRFTVLGLLRAVVVA
TGVVAAGEAHRAHCPQERTGAHLRAEATSVGPTRGGPR
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mRNA from alignment at Scaffold_482:8397..9008+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1097_8a-0001 ID=EsuBft1097_8a-0001|Name=EsuBft1097_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=612bp|location=Sequence derived from alignment at Scaffold_482:8397..9008+ (Ectocarpus subulatus male Bft15b)
TGAAAAGAGGGAGCTGGGATTTTTTGGGGCTTGCTCCTTTCACGGTTCCG
AGGAAAAACGCCCCGCTTTTTCCGGGCAGCCGAAGCAGACACCGGTCACG
CGTGCTGCCTTCATCACACCACACCTAGACAGCACCCACAACACCCCAAA
AAGCTTCCCACGGCAAGTCGACCACCATGGCTGAGCGCGGGAAGCGCCAG
GATCCCACAGACCCCGCACCGCAACGCTGGGAGAAGCGCCGTCGACGAGC
TATCGACGAGGACAATGCAGCCCAGGAAGACAAGAGATTCACGGTCCTGG
GTCTTCTGAGGGCCGTAGTAGTGGCGACGGGCGTGGTGGCAGCAGGAGAA
GCTCATCGTGCCCACTGCCCTCAGGAACGAACGGGAGCCCATCTACGAGC
CGAAGCGACTTCCGTGGGCCCAACACGAGGCGGACCTCGATGAACGGCGC
GGCTGGCGGCGGTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNN
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Coding sequence (CDS) from alignment at Scaffold_482:8397..9008+

>EsuBft1097_8a-0001 ID=EsuBft1097_8a-0001|Name=EsuBft1097_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=267bp|location=Sequence derived from alignment at Scaffold_482:8397..9008+ (Ectocarpus subulatus male Bft15b)
ATGGCTGAGCGCGGGAAGCGCCAGGATCCCACAGACCCCGCACCGCAACG
CTGGGAGAAGCGCCGTCGACGAGCTATCGACGAGGACAATGCAGCCCAGG
AAGACAAGAGATTCACGGTCCTGGGTCTTCTGAGGGCCGTAGTAGTGGCG
ACGGGCGTGGTGGCAGCAGGAGAAGCTCATCGTGCCCACTGCCCTCAGGA
ACGAACGGGAGCCCATCTACGAGCCGAAGCGACTTCCGTGGGCCCAACAC
GAGGCGGACCTCGATGA
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