EsuBft1097_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1097_7a-0001
Unique Name	EsuBft1097_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_482	contig	Scaffold_482:14454..17574 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FU69
ProteomeId	EsuBft1097_7
Owner	apollo_admin@sb-roscoff.fr
Nb exon	4
Max annot lvl	2880.D7FU69\|-
Length	155
Hectar predicted targeting category	other localisation
Evalue	2.44e-154
EggNOG OGs	2EJXG@1\|root,2SPZB@2759\|Eukaryota
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1097_7a	EsuBft1097_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_482 14454..17574 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1097_7a-0001	EsuBft1097_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_482 14492..17527 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1097_7a-0001-exon	agat-exon-49350	Ectocarpus subulatus male Bft15b	exon	Scaffold_482 14454..14520 -
EsuBft1097_7a-0001-exon	agat-exon-49351	Ectocarpus subulatus male Bft15b	exon	Scaffold_482 14850..15033 -
EsuBft1097_7a-0001-exon	EsuBft1097_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_482 15639..16105 -
EsuBft1097_7a-0001-exon	agat-exon-49352	Ectocarpus subulatus male Bft15b	exon	Scaffold_482 16738..17574 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1097_7a-0001-exon	agat-three_prime_utr-949	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_482 14454..14491 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1097_7a-0001-cds	EsuBft1097_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_482 14492..14520 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1097_7a-0001-exon	agat-five_prime_utr-594	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_482 17528..17574 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_482:14454..17574-
coding sequence from alignment at Scaffold_482:14454..17574-

spliced messenger RNA

>EsuBft1097_7a-0001 ID=EsuBft1097_7a-0001|Name=EsuBft1097_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1555bp|location=Sequence derived from alignment at Scaffold_482:14454..17574- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGCGAGAGGCCCGAGGCATACCACAGCAGACGCGATAAACCCACACCATG
AACAACAACGCCGTAGCAGCGGCAGGCCGGCCATCTAGAGCGAGATCGTT
GCCTCTGAGACTGCAGGATGCTGGTGGAAGTGGTGCTGCTGCTGGGCATG
GGGTCGCCCAGACCGCGCCTGCTGGCGCGGCACAGCGGGCACCGAGCGGC
ATGGCCCGCCAGGCCGTTCACAGCAGGGTGACCCCCCATACTGGTACACA
ACAGGGTATTCCACCTGGCGCGGTGATGATGCCGGGCTTCTCGGACGACG
CTGATCGGCAAGCTCGTCAGGCGGCCTTAGTAAAGGTTCTCAACGACAAG
CGATTTGGCGACGCCCCACAAAAAAAGTGGACCGAGTCGGAGAGCGGCGG
CGACGACGACGAGGGGGGGGGCAGCCCGACGTCAAGTGGCGGCAGCAATG
TTTCGTTAGAGGACAGTTCAGCTCCGTCGGACAGTGGCTCACAGTCGGGC
GATGTCGTGTTCGAAAAGGAAATTCGGGAAGCAATGACCGGGGGAGGGGG
AGCGGGCACGAGGACCACAAACCACGGCAAGCGAAAGGCGAGCGCCGGCG
GCAGCGTCGTAGGGAAGAACAAAGCAGCAGCATCCCATCACGCGAGTGCC
AAAAAAGACCGGGGCAAGGACTACCCACACTGGGCCACACACTTTCTGAA
GCGGACATGCGGGCACCGCAAGATCCCGAGGATGTCGCAGAAGAGCAAGG
GTGTCCTGGTGGCGGCCCTGCGATCTCTCGACGCCAACATGAAACGGCCA
TCTCCGTACTTCGACGACCTCGATGCTATCGCAGCCGGCAAATCTGGACG
CGGCAGCGAGCAGGAGGAGGGGGAGGAGGGAGTCATCCCGGCGAAAGCGC
TGCTTATGTTTCGAGGCGTTATCAACATGGTCGCCCTAGCACGTGACAGA
ACTGAACCGTTTACAGTCGAGGGTGTGGACTACAGTGTGGCGGACCTTTA
CGACGCCATGGAGAAGGAAAACACACCGGAACTGGAGGATTCTGCCGGCG
GGAGTTCGTCGACGGGTGGTGCAGCCGGACCGGACGGGGGTGGTTCCGCC
GGAGGAAGTGGCAGCATCACGGAGCGCAAGGGCCCACACTGCATGATGCG
GCTCGTTGGGATCCTGTGCGAAGACTCCATCCGCCCACTTGTCATCAACA
GCCGCTTGCAGGCGACCCGGCAGGAGCTGGACACCTCAGCAGTTGGGCCG
CGGAAACACTTGTGGACAGAGGTCACCGACCGCTTCCGAGACCCTCGCCA
CCATGTGAGAAAAATCGTGGACGACGAACAAGTGAGTCACGTCAACCCGA
ACATCATCCAGCAACCTAACATCTCGGCGGAAAAGATCACCAAGGTGTGG
TCTGCGGCAAAGGCGAAATGGAACACGCCTTATGCCAATTGGAAGAGTGA
ATCCGGCAACAACCAGCCATGGCTTTCATTTTGCCAAGGGGACACGGACA
CGTACATTCTCGGTTGAGCAATCGAGAAATACCCCGAGCTTGACCAAGTG
TGNNN

protein sequence of EsuBft1097_7a-0001

>EsuBft1097_7 ID=EsuBft1097_7|Name=EsuBft1097_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=489bp
MNNNAVAAAGRPSRARSLPLRLQDAGGSGAAAGHGVAQTAPAGAAQRAPS
GMARQAVHSRVTPHTGTQQGIPPGAVMMPGFSDDADRQARQAALVKVLND
KRFGDAPQKKWTESESGGDDDEGGGSPTSSGGSNVSLEDSSAPSDSGSQS
GDVVFEKEIREAMTGGGGAGTRTTNHGKRKASAGGSVVGKNKAAASHHAS
AKKDRGKDYPHWATHFLKRTCGHRKIPRMSQKSKGVLVAALRSLDANMKR
PSPYFDDLDAIAAGKSGRGSEQEEGEEGVIPAKALLMFRGVINMVALARD
RTEPFTVEGVDYSVADLYDAMEKENTPELEDSAGGSSSTGGAAGPDGGGS
AGGSGSITERKGPHCMMRLVGILCEDSIRPLVINSRLQATRQELDTSAVG
PRKHLWTEVTDRFRDPRHHVRKIVDDEQVSHVNPNIIQQPNISAEKITKV
WSAAKAKWNTPYANWKSESGNNQPWLSFCQGDTDTYILG

mRNA from alignment at Scaffold_482:14454..17574-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1097_7a-0001 ID=EsuBft1097_7a-0001|Name=EsuBft1097_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3121bp|location=Sequence derived from alignment at Scaffold_482:14454..17574- (Ectocarpus subulatus male Bft15b)
GGCGAGAGGCCCGAGGCATACCACAGCAGACGCGATAAACCCACACCATG
AACAACAACGCCGTAGCAGCGGCAGGCCGGCCATCTAGAGCGAGATCGTT
GCCTCTGAGACTGCAGGATGCTGGTGGAAGTGGTGCTGCTGCTGGGCATG
GGGTCGCCCAGACCGCGCCTGCTGGCGCGGCACAGCGGGCACCGAGCGGC
ATGGCCCGCCAGGCCGTTCACAGCAGGGTGACCCCCCATACTGGTACACA
ACAGGGTATTCCACCTGGCGCGGTGATGATGCCGGGCTTCTCGGACGACG
CTGATCGGCAAGCTCGTCAGGCGGCCTTAGTAAAGGTTCTCAACGACAAG
CGATTTGGCGACGCCCCACAAAAAAAGTGGACCGAGTCGGAGAGCGGCGG
CGACGACGACGAGGGGGGGGGCAGCCCGACGTCAAGTGGCGGCAGCAATG
TTTCGTTAGAGGACAGTTCAGCTCCGTCGGACAGTGGCTCACAGTCGGGC
GATGTCGTGTTCGAAAAGGAAATTCGGGAAGCAATGACCGGGGGAGGGGG
AGCGGGCACGAGGACCACAAACCACGGCAAGCGAAAGGCGAGCGCCGGCG
GCAGCGTCGTAGGGAAGAACAAAGCAGCAGCATCCCATCACGCGAGTGCC
AAAAAAGACCGGGGCAAGGACTACCCACACTGGGCCACACACTTTCTGAA
GCGGACATGCGGGCACCGCAAGATCCCGAGGATGTCGCAGAAGAGCAAGG
GTGTCCTGGTGGCGGCCCTGCGATCTCTCGACGCCAACATGAAACGGCCA
TCTCCGTACTTCGACGACCTCGATGCTATCGCAGCCGGTGAGATGCTGGT
ATTGTGTAGATTCGTCGTCGATTAGAGTCCCAGCAGACTACACAGAGTAT
CGGCAAAATATAGGTAATTACTCTGCAATTGAACGCAGTGTGCGCAGAGG
AAACAAAACAAAATTACTGCTGTGTGTGTGTAGTGCCCGCTTCAAATCAA
CCTCTATGTACAGTAACAGGTACACGGCGTGCTCGAGAGCTGTTTTACTT
TCCCCAGTAGGTAGGATATTGAAGGCACTCACAGCGTACCACACGGCATG
CTTTCTTGACGATATTCAATCGGTTGTGCACCGACCAATACGGTAAATCT
TTGGGTGTTCTGTCCTCTCACGCCCAGAGGAAGTAAGGTAAGGTGAACGA
TGTTTTGTGGAAGACAGTCGCCAGGAATATGTACAATTTTGCCAAATTCG
GGCGTGTACACCTGAGGCTTCCTCTCATGCGAAGGCGTATTCGTTGTCTC
GGCCGCTTTCTCATATCCGGGCGTTCGGGCGTTCGCGCAGGCAAATCTGG
ACGCGGCAGCGAGCAGGAGNTAGTTTTGCCAAACTTGGGCGTGGACACCT
GAGGCTTCCTCTCATGCGAAGGCGTATTCATTGTCTGGGCCGCTTTCTCA
TATCCGGGCGTTCGCGCAGGCAAATCTGGACGCGGCAGCGAGCAGGAGGA
GGGGGAGGAGGGAGTCATCCCGGCGAAAGCGCTGCTTATGTTTCGAGGCG
TTATCAACATGGTCGCCCTAGCACGTGACAGAACTGAACCGTTTACAGTC
GAGGGTGTGGACTACAGTGTGGCGGACCTTTACGACGCCATGGAGAAGGA
AAACACACCGGAACTGGAGGATTCTGCCGGCGGGAGTTCGTCGACGGGTG
GTGCAGCCGGACCGGACGGGGGTGGTTCCGCCGGAGGAAGTGGCAGCATC
ACGGAGCGCAAGGGCCCACACTGCATGATGCGGCTCGTTGGGATCCTGTG
CGAAGACTCCATCCGCCCACTTGTCATCAACAGCCGCTTGCAGGCGACCC
GGCAGGAGCTGGACACCTCAGCAGTTGGGCCGCGGAAACACTTGTGGACA
GAGGTCACCGACCGCTTCCGAGACCCTCGCCACCATGTGCGTGCTGGGGG
TAGGGGGTTGATTGGCACGGATCGGACGAGAACGTTGTACAAAAACAGTT
GCCGAAGTGTATGTTGACAACACATGCCGTTCAGTGATAGTTATTTTTAG
GCATGGTATTCAACACCTCATAACGTCCACGGACGATCGCGCCATCGTTT
TAGGTAAAATGCCATTAGGTATCCAACCCCAAGAGCGGGTCAACCTGCTG
TTGACGTCTACCGGTGAATTACGTAGTTGTTGCTGACGCCGACGACCATA
CTGCTGTAGATACTGCTGTAGTTGCTTCGTTGCCTATTATAGTGAAGGAC
ATTGAAAACGCGCTGAAAGTTTTCAAAAGAATGCACTGATAGGCAGGCAA
TATTTTATGCCAGAAGAAAAATAACAGGCCGGGAACAGACCGACATTGGG
CCTTCCCGCAAGAGAGGTGCATTCCCCCCGTTCTTTTTTGTTTTCGGATC
GAAATCGAGTTCAATTTCTCGCACGTCCGGGGGGCGTCATCTTTGTAGGT
AGGTATAAGGAACACGTGTATGATCTGCGTTGCTCCTTCCCTCGCTCCCT
CGCTGTATGTCTGACCTATCGTTGCTGTGGACGATTTTCAGGTGAGAAAA
ATCGTGGACGACGAACAAGTGAGTCACGTCAACCCGAACATCATCCAGCA
ACCTAACATCTCGGCGGAAAAGATCACCAAGGTGTGGTCTGCGGCAAAGG
CGAAATGGAACACGCCTTATGCCAATTGGAAGAGTGAATCCGGCAACAAC
CAGCCATGGCTTTCATTTTGCCAAGGTAAGAGATGGGTGACGTAGGGCTG
GGTATAAAACAGCGTCTGTTTTCTCCAGGAACCTTGGGCGATTCTGTGGC
CGTGGCGTCAATTGTGCCGATCGTACTTCAGCGTGTAAGTGCTGCTACGG
TCGGAGTTTTGATATTGCACTTGGAGTTGTCGATAGTGTTGTAAAACGTA
CTCCCGGGATGACGTCCACCTTGAGGCCTGATTGAAAAGGATTGTCTGCA
CCATGAACTTTTATCGTGTATTTTGAAGCAAGACCAAACACCTTTCCAAT
TGCTCCATACAGACCCTCTCTGCCCGCGCTTTGCGCTTGTTTTTTTTTTT
ACAGGGGACACGGACACGTACATTCTCGGTTGAGCAATCGAGAAATACCC
CGAGCTTGACCAAGTGTGNNN

Coding sequence (CDS) from alignment at Scaffold_482:14454..17574-

>EsuBft1097_7a-0001 ID=EsuBft1097_7a-0001|Name=EsuBft1097_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1470bp|location=Sequence derived from alignment at Scaffold_482:14454..17574- (Ectocarpus subulatus male Bft15b)
ATGAACAACAACGCCGTAGCAGCGGCAGGCCGGCCATCTAGAGCGAGATC
GTTGCCTCTGAGACTGCAGGATGCTGGTGGAAGTGGTGCTGCTGCTGGGC
ATGGGGTCGCCCAGACCGCGCCTGCTGGCGCGGCACAGCGGGCACCGAGC
GGCATGGCCCGCCAGGCCGTTCACAGCAGGGTGACCCCCCATACTGGTAC
ACAACAGGGTATTCCACCTGGCGCGGTGATGATGCCGGGCTTCTCGGACG
ACGCTGATCGGCAAGCTCGTCAGGCGGCCTTAGTAAAGGTTCTCAACGAC
AAGCGATTTGGCGACGCCCCACAAAAAAAGTGGACCGAGTCGGAGAGCGG
CGGCGACGACGACGAGGGGGGGGGCAGCCCGACGTCAAGTGGCGGCAGCA
ATGTTTCGTTAGAGGACAGTTCAGCTCCGTCGGACAGTGGCTCACAGTCG
GGCGATGTCGTGTTCGAAAAGGAAATTCGGGAAGCAATGACCGGGGGAGG
GGGAGCGGGCACGAGGACCACAAACCACGGCAAGCGAAAGGCGAGCGCCG
GCGGCAGCGTCGTAGGGAAGAACAAAGCAGCAGCATCCCATCACGCGAGT
GCCAAAAAAGACCGGGGCAAGGACTACCCACACTGGGCCACACACTTTCT
GAAGCGGACATGCGGGCACCGCAAGATCCCGAGGATGTCGCAGAAGAGCA
AGGGTGTCCTGGTGGCGGCCCTGCGATCTCTCGACGCCAACATGAAACGG
CCATCTCCGTACTTCGACGACCTCGATGCTATCGCAGCCGGCAAATCTGG
ACGCGGCAGCGAGCAGGAGGAGGGGGAGGAGGGAGTCATCCCGGCGAAAG
CGCTGCTTATGTTTCGAGGCGTTATCAACATGGTCGCCCTAGCACGTGAC
AGAACTGAACCGTTTACAGTCGAGGGTGTGGACTACAGTGTGGCGGACCT
TTACGACGCCATGGAGAAGGAAAACACACCGGAACTGGAGGATTCTGCCG
GCGGGAGTTCGTCGACGGGTGGTGCAGCCGGACCGGACGGGGGTGGTTCC
GCCGGAGGAAGTGGCAGCATCACGGAGCGCAAGGGCCCACACTGCATGAT
GCGGCTCGTTGGGATCCTGTGCGAAGACTCCATCCGCCCACTTGTCATCA
ACAGCCGCTTGCAGGCGACCCGGCAGGAGCTGGACACCTCAGCAGTTGGG
CCGCGGAAACACTTGTGGACAGAGGTCACCGACCGCTTCCGAGACCCTCG
CCACCATGTGAGAAAAATCGTGGACGACGAACAAGTGAGTCACGTCAACC
CGAACATCATCCAGCAACCTAACATCTCGGCGGAAAAGATCACCAAGGTG
TGGTCTGCGGCAAAGGCGAAATGGAACACGCCTTATGCCAATTGGAAGAG
TGAATCCGGCAACAACCAGCCATGGCTTTCATTTTGCCAAGGGGACACGG
ACACGTACATTCTCGGTTGA