EsuBft1097_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1097_5a-0001
Unique NameEsuBft1097_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_482contigScaffold_482:31113..33091 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1097_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length88
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1097_5aEsuBft1097_5aEctocarpus subulatus male Bft15bgeneScaffold_482 31113..33091 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1097_5a-0001EsuBft1097_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_482 32292..32922 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1097_5a-0001-exonagat-exon-49346Ectocarpus subulatus male Bft15bexonScaffold_482 31113..31332 +
EsuBft1097_5a-0001-exonEsuBft1097_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_482 32062..32356 +
EsuBft1097_5a-0001-exonagat-exon-49345Ectocarpus subulatus male Bft15bexonScaffold_482 32721..33091 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1097_5a-0001-exonagat-five_prime_utr-591Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_482 31113..31332 +
EsuBft1097_5a-0001-exonagat-five_prime_utr-592Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_482 32062..32291 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1097_5a-0001-cdsEsuBft1097_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_482 32292..32356 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1097_5a-0001-exonagat-three_prime_utr-945Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_482 32923..33091 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1097_5a-0001 ID=EsuBft1097_5a-0001|Name=EsuBft1097_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=886bp|location=Sequence derived from alignment at Scaffold_482:31113..33091+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ACGAAAGACGTCGGTTCTGCGGGTTTCAGCGCGCTTTCACGACAGTGATT
CCCAACTCAGCGGGCACAATCGGGACCGCGCGAAATGAGTCATTCCGTTC
GCTAGGCCACCAGGTGCCACCGTGCGAAGGCGCGAGTCTCGCCGTGCGTC
TGGGCGCGCGCTATGAGGGCGCGAAGTTAACGTCCTGTTTTCAGAGGGGG
TCGAATCGCCCCGCTGCGCTGTCTTTCCTTCTCCCGCCGACCGACCGACT
CAACCCTCCTGCTACCCCCTGCCCTCGCGCTCTCTATCCCATGCTAAGCT
AGCACCGTCTTGTGTGGTTTGCGCTACGGGCCCCCCGGCGGTCGCCTCCG
GGACCTGTAGTGCAAGAAGAGGGTGGGGCCTGACCCCGTTGCCTCCCAAA
TATACTTCTGGACCGCGCCTATCGATGGACAAGACGATACCGCGGGTGTT
ATGTTCGTGGCGAGCGCAAGCGTGGCGAGCGCAAAAAACGGAAAGCACAG
GAGGGGAGTGGACGGGTGTGGCTCCAGCACTCGCTCGCCACAGAGCACCT
CCACCAAATCTTCCGGCGTCTCTCGGGAAGGACGCATCATCACCCCTCCA
GCTGCATCGCCGCCGCCGCCGCCGCCGTTGCCGTTGCCGCCCGTGGTGCC
GTCGGTGCCATCTCCTCCCTCCGGGTGTACCACCGTGCTCTCAAGGTGCT
GGTGGAGGTCTTCGTGAGAGAGGACATATGCCATGACCTAAGCGACGAGC
GCGGGGGGCACGATAGGCAGATTACAGAGGTTCTCGTGCTTCCTCTGTTT
TGGCTTTGAGAGGGGTTCTTCATCGGCGTATGTGCGGGACTAAAGTTTGG
TCATGGTTACGGCGATCATAAGGGGGAAGGCCGGTT
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protein sequence of EsuBft1097_5a-0001

>EsuBft1097_5 ID=EsuBft1097_5|Name=EsuBft1097_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=88bp
MFVASASVASAKNGKHRRGVDGCGSSTRSPQSTSTKSSGVSREGRIITPP
AASPPPPPPLPLPPVVPSVPSPPSGCTTVLSRCWWRSS
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mRNA from alignment at Scaffold_482:31113..33091+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1097_5a-0001 ID=EsuBft1097_5a-0001|Name=EsuBft1097_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1979bp|location=Sequence derived from alignment at Scaffold_482:31113..33091+ (Ectocarpus subulatus male Bft15b)
ACGAAAGACGTCGGTTCTGCGGGTTTCAGCGCGCTTTCACGACAGTGATT
CCCAACTCAGCGGGCACAATCGGGACCGCGCGAAATGAGTCATTCCGTTC
GCTAGGCCACCAGGTGCCACCGTGCGAAGGCGCGAGTCTCGCCGTGCGTC
TGGGCGCGCGCTATGAGGGCGCGAAGTTAACGTCCTGTTTTCAGAGGGGG
TCGAATCGCCCCGCTGCGCTGTGAGCGACCCAGTCCTGAAGATCTCGATT
CCCGTATTACCTCTATATATATTTTGGTTGGACCCCTATGTATCGCAGGG
GAGCCCTATTTTGTTATGGAGCTATTACCCGAAGAACAGGCACCGACGGA
TTGCCGAAAGAATGAGACTCAACACCACCTCCGTATCATGTCGCATATGA
AAGACAGATTGTATGCTTTAGTCCAGGAATCGTTGCCAGTTACACTACAG
GTGTTCCCGGGCGAACCGACAACACAATCGCCGGAGCAAAATTGTTCTAA
GGCAAAATACCTACACACGCAGAGAGAAGAAAGACTTACCCATTCGTCTT
GTATAGGCAGGCGGCGGTACAACCTCCCTCTACCTCATTTTTATGGTGTA
ACCCCTCGAGGCAGCCACTATCCTGCACGACACTCAAGTACATGTACCGG
GAACAAATTTTTTCTCCACCTACTGTGTAGGCATACAGTCCATCACCAAA
AACATCGTTTCCTCTTCTCGTTGAGCAGAGATTGCCTATGTTCACGCTCC
AAGTAGCAGTAGTGCTCCCTTGCGATATCGACCCCGCCCGCCCTGTGAAA
ACAGCAGTGTTTGCTCCAGGCTTCATACACGCAGCACTGCACGTCTCTTC
CCGTCCGCACCAGAGAAACACCGCACCAAAACAGCCAACGCCCAAATAAA
CATCGTACGCTCCTTCCCCCGCGTGACTACGTCGTGCTTATCGTTGCAGG
TCTTTCCTTCTCCCGCCGACCGACCGACTCAACCCTCCTGCTACCCCCTG
CCCTCGCGCTCTCTATCCCATGCTAAGCTAGCACCGTCTTGTGTGGTTTG
CGCTACGGGCCCCCCGGCGGTCGCCTCCGGGACCTGTAGTGCAAGAAGAG
GGTGGGGCCTGACCCCGTTGCCTCCCAAATATACTTCTGGACCGCGCCTA
TCGATGGACAAGACGATACCGCGGGTGTTATGTTCGTGGCGAGCGCAAGC
GTGGCGAGCGCAAAAAACGGAAAGCACAGGAGGGGAGTGGACGGGTGAGT
GAGTAGGTGGGGTGGGAATCCGAGCGCGTGCGGGGCATGATATTTTCAGC
CACATTTCCCCAGGGGCAACACATAAAGACAAGGCGTCAGATGCGCGTGC
GCTGCTGCTGTAAGAGGCTAGACTCAAACGCCAACAGCAGTGTCGAAAGT
AACATCGCCAATGCCTTGAGATGCTGACAAGCATCGGCACCTGCTCACTT
CCCCTCCACCACCAACCGCCACCTCTTCCCCTCCTCCTCAGCAACGCTCT
TTCCTCTAGTCACAATCTCTTGCACCCCGAACCTCCATCGCTACACGGGC
CCATGAACTCCCTCACCCCCACCCCACCGCCCCATCCCAAAACCTCACCA
ATATACAGGTGTGGCTCCAGCACTCGCTCGCCACAGAGCACCTCCACCAA
ATCTTCCGGCGTCTCTCGGGAAGGACGCATCATCACCCCTCCAGCTGCAT
CGCCGCCGCCGCCGCCGCCGTTGCCGTTGCCGCCCGTGGTGCCGTCGGTG
CCATCTCCTCCCTCCGGGTGTACCACCGTGCTCTCAAGGTGCTGGTGGAG
GTCTTCGTGAGAGAGGACATATGCCATGACCTAAGCGACGAGCGCGGGGG
GCACGATAGGCAGATTACAGAGGTTCTCGTGCTTCCTCTGTTTTGGCTTT
GAGAGGGGTTCTTCATCGGCGTATGTGCGGGACTAAAGTTTGGTCATGGT
TACGGCGATCATAAGGGGGAAGGCCGGTT
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Coding sequence (CDS) from alignment at Scaffold_482:31113..33091+

>EsuBft1097_5a-0001 ID=EsuBft1097_5a-0001|Name=EsuBft1097_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=267bp|location=Sequence derived from alignment at Scaffold_482:31113..33091+ (Ectocarpus subulatus male Bft15b)
ATGTTCGTGGCGAGCGCAAGCGTGGCGAGCGCAAAAAACGGAAAGCACAG
GAGGGGAGTGGACGGGTGTGGCTCCAGCACTCGCTCGCCACAGAGCACCT
CCACCAAATCTTCCGGCGTCTCTCGGGAAGGACGCATCATCACCCCTCCA
GCTGCATCGCCGCCGCCGCCGCCGCCGTTGCCGTTGCCGCCCGTGGTGCC
GTCGGTGCCATCTCCTCCCTCCGGGTGTACCACCGTGCTCTCAAGGTGCT
GGTGGAGGTCTTCGTGA
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