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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 946362.XP_004988914.1 |
| ProteomeId | EsuBft1096_7 |
| Protein domains | SSF56672 |
| Protein domains | IPR001584 |
| Protein domains | IPR012337 |
| Protein domains | IPR000477 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon os:drosophila melanogaster gn:pol pe:3 sv:1 [Automatic annotation] |
| Nb exon | 2 |
| Max annot lvl | 33154|Opisthokonta |
| Length | 2821 |
| Evalue | 7.02e-53 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | retrotransposable element Tf2 155 kDa protein type 1-like |
| COG category | G |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0003676 |
| GO | 0015074 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1096_7a-0001 ID=EsuBft1096_7a-0001|Name=EsuBft1096_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2821bp|location=Sequence derived from alignment at Scaffold_501:309451..313705- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGACGATTTGATCTGTATCAATCACACGTTCGAAGCTCATCTGTCATC TCTCGAGAAAATGTTCGCAGCATTGCAAGCAGCAGGGCTCACGCTCAAAC CGTCGAAAATTCAATTTGGTCAGAAAGAAGTCGACTATTTGGGTCATGTC ATCTCCGCAAAAGGTATCTCTGTCAGCACCGACCGTATTGATGCCATTCG CAACCTGCCCACTCCCACCTGCATCAAAGATCTCCGATCTGTCCTAGGCA TGGTGAATTTTGTCCGACGTTTCATCAAAGATTACGCCGATGTCACTGCT CCGCTGGTCGAACTCACTCGAAAAAATTGTATCAAACGTGCTAGTTTTAG AAAAGCATGGGGGTCGGCCCAAGATGCCGCCTTCGAAAATGTCAAGAGAG TCCTGTCCTCACCTGTCCTCCATTTTCCCGTTTTTTCTCGAGAATTTGTC GTTCACACCGACGCCTCTGAACAAGGCGTAGGCGCTTTCCTCGCCCAACC ATCCCGTGATATTGACGACGGTAATGAACTCGATATCGTCGCGTTTTACA GTAAACGTTTTTCTAAGGGCCAAGGCCATTACNCACCTGTCCTCCATTTT CCCGATTTTTCTCGAGAATTTGTCGTTCACACCGACGCCTCTGAACAAGG CGTAGGCGCTTTCCTCGCCCAACCATCCCGTGATATTGACGACGGTAATG AACTCGATATCGTCGCGTTTTACAGTAAACGTTTTTCTAAGGGCCAAGGC CATTACAGCGCTACCATGAAAGAATTCATTGCGGTTGTCTGGGCTCTCAC CCACTGGCGCCTGTACCTTTGGGGCCGCCATTTTACGTGTAGCACTGACC ATCAAGCGCTTACGTATCTGTACCACATGCAAGACACGTCCAACATGTTG ACGCGCTGGGCTATCGCACTCCAGAATTACGATTTTACTGTCAAACATGT GCCGGGGAAACTCAACGTTGTCCCCGACGCTCTGTCCCGTATTTTTAGCG AGGTTAACGGCGATCATGTGCCTTCCGAACCGCGCCTTGCGGCTATCTGT CGCAACGTGCCAGACGATAAACCATTTTGTCCCCCTGTCCCTCGCGATTA CGAAGTGTCTTCATACAACCTCGATGAAACCGCGCTCGTCGAAAGCGACC GCGAATTATTTTCGAGTGCTGTCTCCGTCTTCCCGGTAGTCGATTCTGTC AAGCTGTTGGATCACCAAAAACGCGAGTTCCGCCAGTATTTCGATTACCT TGCTTCTCCCGCAAAATCCCCTGTTCCCCCGAACCAGTCTAAGTCTAGCA TGAGCAAATTTTTCCTTCATGAAGGTTTGCTTTGTCGTTCGTACATCGCA GCCCACCTACGCCGTAGGGCTCACTTCCGCGATCAACTCGTGGTCCCGTC CTCACTACGAACCCTTGTCATCTCCTCATGCCATGACCTACCCTCCTCTG GAGGCCACCTAACCTTCAAAGCCGTAGATCTTGTTGAATACAAGTCACTG TCCGAAGGAAACCGCTACATCCTGTCCGTCATCGACCATCTCACGCGCTT CGTCATATTGATCCCCATCAAATCAAAAGACGCCACTGTAACAGTGCGAA ACCTTGTAGACCGCGTCTTTTCGGTGTTTGGTCCGCCGTAAACTCTGCAC TCTGATCAAGGCAAGGAATTTGAAAACCGGCTTGTGCAAGAACTGCAGTC TGTCTTTGGGTACAAGAAAACCCGTACCGCCGCGTATCGTCCTCAAGGCT TGCCTGCAATTTTCTTTACGTGTGAATCGAGCGGTTGGTACCGCCACTCT TCGTGTCTATGATGTTTTGGTGTGTGTTTATGTTTTTCACGCGTTGTCTT GGTGTATTCCACCCGATTTTTGTTTTTGTGTCGGGACCCATGTCCCACTC TGCTTTCGTCGTTGCTATTGTATCATTTGGTACTACTTGCAGCTTAGCGG ATGGGGGGTCGCCAGAGACCAACGACGGATCATTCATAAAAACACGATTT CAAAATATCTTTGCCTCCAGGGTATCACACGCCCTTGTCTCGTCCAGCCT CGCCTCTCTCCGATCGCGGACAAGCGTCGCTGATGACGACTGCTTGTCGC AGTGTGTACATACTGATGAATTCGATTTGTCCTGTGTTCCATCGATTCTC GGCCTTGCGACAATCAATCTGTTTTTGCTTTGTCATGTCCAACGTCAATA CACGTCTGTCCTGTCTCCCGTCATTGTTGACGCAATGCCTAGCTTGATAA CCCGCATTTCGTTATGCGCAAGAGCTCTGACCAGCCTACAAGATGGTTGT TAACTAGCGCACTGTATCACCGCAATGATGTAGCCATGCTGTCTATGTCT CACTTCGGTGACCTCATGTGCCCTGTCGCGTGCCATATCTCGTCTGGCCA CGGTACGCAACGTTGCCCTGCGCACGCTTGTCTCCCAGGATCTTACCTCA CTCTGTGATTTGTAAATACGAGAATCATAGTATATGTCGCGACTATAAAT ATTTTTTGTCTTGTACGAGTTGTCAGCCCTGCAGGCCGCAACGCAGAAGT GCATTGCGATATACTCTGTACTCCCCATCACTCTGTCCTTATCGATCCTG TGATAATTTTGTCTGTTGCCCAAACACTAACAACGGTGTTTTCGTCAACC CCGGTACACGTCCCGTTCACGGCTTTACCTCCGGCACTACTGTTGTCCGT ACATCGATGTATGTGTCGTCGTTGGATTGACGTTGAGTGAAGTCAATTAA ATGTAAGTGAAACTTTTTGTCAGCGAACCAGAACTCCTCGCTCTTGAGTT TTGGTGGAGTACGAGCTCTAA back to topprotein sequence of EsuBft1096_7a-0001 >EsuBft1096_7 ID=EsuBft1096_7|Name=EsuBft1096_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=546bp
MDDLICINHTFEAHLSSLEKMFAALQAAGLTLKPSKIQFGQKEVDYLGHV ISAKGISVSTDRIDAIRNLPTPTCIKDLRSVLGMVNFVRRFIKDYADVTA PLVELTRKNCIKRASFRKAWGSAQDAAFENVKRVLSSPVLHFPVFSREFV VHTDASEQGVGAFLAQPSRDIDDGNELDIVAFYSKRFSKGQGHYXPVLHF PDFSREFVVHTDASEQGVGAFLAQPSRDIDDGNELDIVAFYSKRFSKGQG HYSATMKEFIAVVWALTHWRLYLWGRHFTCSTDHQALTYLYHMQDTSNML TRWAIALQNYDFTVKHVPGKLNVVPDALSRIFSEVNGDHVPSEPRLAAIC RNVPDDKPFCPPVPRDYEVSSYNLDETALVESDRELFSSAVSVFPVVDSV KLLDHQKREFRQYFDYLASPAKSPVPPNQSKSSMSKFFLHEGLLCRSYIA AHLRRRAHFRDQLVVPSSLRTLVISSCHDLPSSGGHLTFKAVDLVEYKSL SEGNRYILSVIDHLTRFVILIPIKSKDATVTVRNLVDRVFSVFGPP back to topmRNA from alignment at Scaffold_501:309451..313705- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1096_7a-0001 ID=EsuBft1096_7a-0001|Name=EsuBft1096_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4255bp|location=Sequence derived from alignment at Scaffold_501:309451..313705- (Ectocarpus subulatus male Bft15b) ATGGACGATTTGATCTGTATCAATCACACGTTCGAAGCTCATCTGTCATC
TCTCGAGAAAATGTTCGCAGCATTGCAAGCAGCAGGGCTCACGCTCAAAC
CGTCGAAAATTCAATTTGGTCAGAAAGAAGTCGACTATTTGGGTCATGTC
ATCTCCGCAAAAGGTATCTCTGTCAGCACCGACCGTATTGATGCCATTCG
CAACCTGCCCACTCCCACCTGCATCAAAGATCTCCGATCTGTCCTAGGCA
TGGTGAATTTTGTCCGACGTTTCATCAAAGATTACGCCGATGTCACTGCT
CCGCTGGTCGAACTCACTCGAAAAAATTGTATCAAACGTGCTAGTTTTAG
AAAAGCATGGGGGTCGGCCCAAGATGCCGCCTTCGAAAATGTCAAGAGAG
TCCTGTCCTCACCTGTCCTCCATTTTCCCGTTTTTTCTCGAGAATTTGTC
GTTCACACCGACGCCTCTGAACAAGGCGTAGGCGCTTTCCTCGCCCAACC
ATCCCGTGATATTGACGACGGTAATGAACTCGATATCGTCGCGTTTTACA
GTAAACGTTTTTCTAAGGGCCAAGGCCATTACNCACCTGTCCTCCATTTT
CCCGATTTTTCTCGAGAATTTGTCGTTCACACCGACGCCTCTGAACAAGG
CGTAGGCGCTTTCCTCGCCCAACCATCCCGTGATATTGACGACGGTAATG
AACTCGATATCGTCGCGTTTTACAGTAAACGTTTTTCTAAGGGCCAAGGC
CATTACAGCGCTACCATGAAAGAATTCATTGCGGTTGTCTGGGCTCTCAC
CCACTGGCGCCTGTACCTTTGGGGCCGCCATTTTACGTGTAGCACTGACC
ATCAAGCGCTTACGTATCTGTACCACATGCAAGACACGTCCAACATGTTG
ACGCGCTGGGCTATCGCACTCCAGAATTACGATTTTACTGTCAAACATGT
GCCGGGGAAACTCAACGTTGTCCCCGACGCTCTGTCCCGTATTTTTAGCG
AGGTTAACGGCGATCATGTGCCTTCCGAACCGCGCCTTGCGGCTATCTGT
CGCAACGTGCCAGACGATAAACCATTTTGTCCCCCTGTCCCTCGCGATTA
CGAAGTGTCTTCATACAACCTCGATGAAACCGCGCTCGTCGAAAGCGACC
GCGAATTATTTTCGAGTGCTGTCTCCGTCTTCCCGGTAGTCGATTCTGTC
AAGCTGTTGGATCACCAAAAACGCGAGTTCCGCCAGTATTTCGATTACCT
TGCTTCTCCCGCAAAATCCCCTGTTCCCCCGAACCAGTCTAAGTCTAGCA
TGAGCAAATTTTTCCTTCATGAAGGTTTGCTTTGTCGTTCGTACATCGCA
GCCCACCTACGCCGTAGGGCTCACTTCCGCGATCAACTCGTGGTCCCGTC
CTCACTACGAACCCTTGTCATCTCCTCATGCCATGACCTACCCTCCTCTG
GAGGCCACCTAACCTTCAAAGGTACTTTCGACAAAGTTCGCGACCGCTAC
TGGTGGCCGACTATGCACTTTGATATCACTCGTCACGTTCAGAGTTGCGA
ATCATGTCAACGTCGAAAAAAATCCCACCGACCGCCTCAACTGCCTGTCG
GCCATCGTCAAGTAACGCAACCCTTCCAATGCGCNTCATCTCCTCATGCC
ATGACCTACCCTCCTCTGGAGGCCACCTAGCCTTCAAAGGTACTTTCGAC
AAAGTTCGCGACCGCTACTGGTGGCCAACTATGCACTCTGATATCACTCG
TCACGTTCAGAGTTGCGAATCATGTCAACGTCGAAAAAACGCCTACCGAC
CGCCTCAACTGCCTGTCGGCCATCGTCCAGTAACGCAACCCTTCCAATGC
GTAGCCGTAGATCTTGTTGAATACAAGTCACTGTCCGAAGGAAACCGCTA
CATCCTGTCCGTCATCGACCATCTCACGCGCTTCGTCATATTGATCCCCA
TCAAATCAAAAGACGCCACTGTAACAGTGCGAAACCTTGTAGACCGCGTC
TTTTCGGTGTTTGGTCCGCCGTAAACTCTGCACTCTGATCAAGGCAAGGA
ATTTGAAAACCGGCTTGTGCAAGAACTGCAGTCTGTCTTTGGGTACAAGA
AAACCCGTACCGCCGCGTATCGTCCTCAAGGTAACTCTGTCCTTGAGCGT
GTCCATAGTACCGTCCGCAACATGCTCGCTATGTACAGCAACCTGGCTTG
TGATAATTGGTCGGAACTGTTGCCGTTTGTCCAACTTGCGCATAATACTG
CCTACTCCACGACCCTACAGGAGACTCCTCATTATCTCATGTTCGGTCGC
GCGGCTCCGTGCTATTCCCCAATGTGCCGAAATGATTGCATCCTACCGCG
CCGAAATCTTGTCCCAAGATCCCTCAGCATTTTCCCCACCTCGGAGGAAC
GTCCGTCATCCTCCGCCGCTAGCACTTAGTATGGGCTTACTGTCTGCCNT
AGCATGTTTTCCTGTGCGTACTCGGGGGTTCCGTACCCACATGGCTTTTC
TCCTGGTGCCCATGATTTTTCATTTGGGACCCGTGCGAAGTACCGCGCAC
GCCTTGTCGTTATTATATTTTGTTTTAGTTCCCGGCCGCATGTTTCCACG
CCGCCCGGCAACTTCATTGATGTGTATTCTTGTCCCGTTGGTTAACGTCC
CGTGGTTCGACTTCGTTACATCACTTGACGCCCCGCATCGTTTATATGCG
CTAGAGCACTCGCACTGCCAGTAAGATGGGCGCCATTTGGTATTCTACTC
CGTCTCCACGCGACGTACCGACACAGGCTTGCCTGCAATTTTCTTTACNC
TTTTCTCCTGGTGCCCATGATTTTTCATTTGGGACCCGTGCGAAGTACCA
CGCACGCCTTGTCGTTATAATGTTTTGATTTAGTTCCCGGCCGCATGTTT
CCACGCCGCCCGGCAACTTCATTGATATGTATACTTNGTGCGAAGTACCG
CGCACGCCTTGTCGTTATTATATTTTGTTTTAGTTCCCGGCCGCATGTTT
CCACGCCGCCCGGCAACTTCATTGATGTGTATTCTTGTCCCGTTGGTTAA
CGTCCCGTGGTTCGACTTCGTTACATCACTTGACGCCCCGCATCGTTTAT
ATGCGCTAGAGCACTCGCACTGCCAGTAAGATGGGCGCCATTTGGTATTC
TACTCCGTCTCCACGCGACGTACCGACACAGGCTTGCCTGCAATTTTCTT
TACGTGTGAATCGAGCGGTTGGTACCGCCACTCTTCGTGTCTATGATGTT
TTGGTGTGTGTTTATGTTTTTCACGCGTTGTCTTGGTGTATTCCACCCGA
TTTTTGTTTTTGTGTCGGGACCCATGTCCCACTCTGCTTTCGTCGTTGCT
ATTGTATCATTTGGTACTACTTGCAGCTTAGCGGATGGGGGGTCGCCAGA
GACCAACGACGGATCATTCATAAAAACACGATTTCAAAATATCTTTGCCT
CCAGGGTATCACACGCCCTTGTCTCGTCCAGCCTCGCCTCTCTCCGATCG
CGGACAAGCGTCGCTGATGACGACTGCTTGTCGCAGTGTGTACATACTGA
TGAATTCGATTTGTCCTGTGTTCCATCGATTCTCGGCCTTGCGACAATCA
ATCTGTTTTTGCTTTGTCATGTCCAACGTCAATACACGTCTGTCCTGTCT
CCCGTCATTGTTGACGCAATGCCTAGCTTGATAACCCGCATTTCGTTATG
CGCAAGAGCTCTGACCAGCCTACAAGATGGTTGTTAACTAGCGCACTGTA
TCACCGCAATGATGTAGCCATGCTGTCTATGTCTCACTTCGGTGACCTCA
TGTGCCCTGTCGCGTGCCATATCTCGTCTGGCCACGGTACGCAACGTTGC
CCTGCGCACGCTTGTCTCCCAGGATCTTACCTCACTCTGTGATTTGTAAA
TACGAGAATCATAGTATATGTCGCGACTATAAATATTTTTTGTCTTGTAC
GAGTTGTCAGCCCTGCAGGCCGCAACGCAGAAGTGCATTGCGATATACTC
TGTACTCCCCATCACTCTGTCCTTATCGATCCTGTGATAATTTTGTCTGT
TGCCCAAACACTAACAACGGTGTTTTCGTCAACCCCGGTACACGTCCCGT
TCACGGCTTTACCTCCGGCACTACTGTTGTCCGTACATCGATGTATGTGT
CGTCGTTGGATTGACGTTGAGTGAAGTCAATTAAATGTAAGTGAAACTTT
TTGTCAGCGAACCAGAACTCCTCGCTCTTGAGTTTTGGTGGAGTACGAGC
TCTAA back to topCoding sequence (CDS) from alignment at Scaffold_501:309451..313705- >EsuBft1096_7a-0001 ID=EsuBft1096_7a-0001|Name=EsuBft1096_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1641bp|location=Sequence derived from alignment at Scaffold_501:309451..313705- (Ectocarpus subulatus male Bft15b) ATGGACGATTTGATCTGTATCAATCACACGTTCGAAGCTCATCTGTCATC TCTCGAGAAAATGTTCGCAGCATTGCAAGCAGCAGGGCTCACGCTCAAAC CGTCGAAAATTCAATTTGGTCAGAAAGAAGTCGACTATTTGGGTCATGTC ATCTCCGCAAAAGGTATCTCTGTCAGCACCGACCGTATTGATGCCATTCG CAACCTGCCCACTCCCACCTGCATCAAAGATCTCCGATCTGTCCTAGGCA TGGTGAATTTTGTCCGACGTTTCATCAAAGATTACGCCGATGTCACTGCT CCGCTGGTCGAACTCACTCGAAAAAATTGTATCAAACGTGCTAGTTTTAG AAAAGCATGGGGGTCGGCCCAAGATGCCGCCTTCGAAAATGTCAAGAGAG TCCTGTCCTCACCTGTCCTCCATTTTCCCGTTTTTTCTCGAGAATTTGTC GTTCACACCGACGCCTCTGAACAAGGCGTAGGCGCTTTCCTCGCCCAACC ATCCCGTGATATTGACGACGGTAATGAACTCGATATCGTCGCGTTTTACA GTAAACGTTTTTCTAAGGGCCAAGGCCATTACNCACCTGTCCTCCATTTT CCCGATTTTTCTCGAGAATTTGTCGTTCACACCGACGCCTCTGAACAAGG CGTAGGCGCTTTCCTCGCCCAACCATCCCGTGATATTGACGACGGTAATG AACTCGATATCGTCGCGTTTTACAGTAAACGTTTTTCTAAGGGCCAAGGC CATTACAGCGCTACCATGAAAGAATTCATTGCGGTTGTCTGGGCTCTCAC CCACTGGCGCCTGTACCTTTGGGGCCGCCATTTTACGTGTAGCACTGACC ATCAAGCGCTTACGTATCTGTACCACATGCAAGACACGTCCAACATGTTG ACGCGCTGGGCTATCGCACTCCAGAATTACGATTTTACTGTCAAACATGT GCCGGGGAAACTCAACGTTGTCCCCGACGCTCTGTCCCGTATTTTTAGCG AGGTTAACGGCGATCATGTGCCTTCCGAACCGCGCCTTGCGGCTATCTGT CGCAACGTGCCAGACGATAAACCATTTTGTCCCCCTGTCCCTCGCGATTA CGAAGTGTCTTCATACAACCTCGATGAAACCGCGCTCGTCGAAAGCGACC GCGAATTATTTTCGAGTGCTGTCTCCGTCTTCCCGGTAGTCGATTCTGTC AAGCTGTTGGATCACCAAAAACGCGAGTTCCGCCAGTATTTCGATTACCT TGCTTCTCCCGCAAAATCCCCTGTTCCCCCGAACCAGTCTAAGTCTAGCA TGAGCAAATTTTTCCTTCATGAAGGTTTGCTTTGTCGTTCGTACATCGCA GCCCACCTACGCCGTAGGGCTCACTTCCGCGATCAACTCGTGGTCCCGTC CTCACTACGAACCCTTGTCATCTCCTCATGCCATGACCTACCCTCCTCTG GAGGCCACCTAACCTTCAAAGCCGTAGATCTTGTTGAATACAAGTCACTG TCCGAAGGAAACCGCTACATCCTGTCCGTCATCGACCATCTCACGCGCTT CGTCATATTGATCCCCATCAAATCAAAAGACGCCACTGTAACAGTGCGAA ACCTTGTAGACCGCGTCTTTTCGGTGTTTGGTCCGCCGTAA back to top
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