EsuBft1096_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1096_3a-0001
Unique NameEsuBft1096_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_501contigScaffold_501:267583..270036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FIV2
ProteomeIdEsuBft1096_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length203
Hectar predicted targeting categoryother localisation
Evalue1.2e-23
EggNOG OGsKOG4373@1|root,KOG4373@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Preferred nameWRN
KEGG koko:K10900,ko:K20777
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
EC3.1.11.1,3.6.4.12
Description3'-5' exonuclease activity
COG categoryC
BRITEko00000,ko01000,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1096_3aEsuBft1096_3aEctocarpus subulatus male Bft15bgeneScaffold_501 267583..270036 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1096_3a-0001EsuBft1096_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_501 268047..268816 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1096_3a-0001-exonagat-exon-83155Ectocarpus subulatus male Bft15bexonScaffold_501 267583..267736 +
EsuBft1096_3a-0001-exonEsuBft1096_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_501 267885..268081 +
EsuBft1096_3a-0001-exonagat-exon-83154Ectocarpus subulatus male Bft15bexonScaffold_501 268211..268451 +
EsuBft1096_3a-0001-exonagat-exon-83153Ectocarpus subulatus male Bft15bexonScaffold_501 268592..270036 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1096_3a-0001-exonagat-five_prime_utr-584Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_501 267583..267736 +
EsuBft1096_3a-0001-exonagat-five_prime_utr-585Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_501 267885..268046 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1096_3a-0001-cdsEsuBft1096_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_501 268047..268081 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1096_3a-0001-exonagat-three_prime_utr-931Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_501 268817..270036 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1096_3a-0001 ID=EsuBft1096_3a-0001|Name=EsuBft1096_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2037bp|location=Sequence derived from alignment at Scaffold_501:267583..270036+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGGATCATTTCCGTACCGTCAAGAAGAACATCGACGCCAACATCAT
CCATCACAGCGGCGGCGTGGCGGCACCTAGGGGAGGCAGTGGAAAGTTCC
CCTACAGCAGCCCCCTCATTCTCCCGAAGTGTGCTACGATGCAGAACACC
TCAGGATTGCCGAAACTTTCTCCGTTCCTTCTGAAGCCACTGCTTGTTCG
CGTGGATACCCGAGTATTTGTTCCCGGAGCTAGCGCTGGCGGGAATTGCG
TGTCCAAGGTGCGGGAAAAGGGGTTCGCCAGATGGATGGAATCCCAAGGG
GCCACGACGGGTGTTCATGGAGGAAGACGTGGGGTACATCATAGGATTCC
GGTACAAGTGCGAGCGGTGTGTTGAATACAACGGGACCGTGGAGGAGTCG
GAGCAGCGCCCTACCAGTTTCAACGCGTGGGATGTCGGATGCCTGGATCG
CCTTCCTGACTACGTGTCGAAGGAATTTTTTCCTTTCATTCTGACTCATC
GGTCGGGTATCGACATTCGTCTTGTCGACCGGCTCGCAGACGACCTGGCC
CATGGGAAGGGCTTCTCCGCCGCTGCCAAGTACATCCGCCAGGCACACAC
GAGGAAGTTTATGGTGTATCAACTGAAGTACGTGTCACTGGCTGACGCCC
GGCGATCGAGCCGGGTGAGCTTGTTCGGAGCGGCCCCAGTACCAGAGAAG
TTTGGGAGTTCGATGACACCGAGAAGTATTGCGGTGCGGTGCTCTCGGAC
CACTACCTGCGGGACGTGTGGCGCACGTACTTCTCAGAACTTCCTGTGCT
GGGGGTGGAAGGCGTGAAGTGGACGCGGGAGGACTATTTGCCCCGCGTGC
ACCAGCGCTGGGACGGAACCGTACTCGCTGGAGATGCTTCGTTCAAGTTT
GCGAAGATCATACGGCTAGGGGCAACAGCGCACGGAGAGCGCACCCGCCC
CGTGCACGGCATTTTCACAGTCTTCAACGATTACGAGCAGGTCCAGTAGC
ATGCGCCTCTCGCCGTCCGTAGATATGTTTCGTTCGTACTTTGAGCTTGT
TTCCCCTGTGGTGTTTCGTCGTAGGGGTGTTTGCGTGTTAGTCCTTAGGC
CTTGTGCCGTGTTGCCGTGTGGTGTGTGCGAAATTGGTTCCACCTGGGTT
CTCTCATGGAGCTTGAGCCGTGGTCCGATTTTCCACTCGCTGTGTTTCCT
TCTTGCATGCCTCTTGCCAGGTTTCGGCGCGCACAGAGCGAACTGAAATA
CATTTCAGCACGCAAGAAAAGGGTGTTCCCGCCCTGCCTTTGCAATGTCT
GCCGTGGCTCATACACTGAAAGCTGAATTTTACTTGTATATCCGTAAAAC
GGGCATGGGGCTCCTGGTGTTCTTGTTGTATAAAACCGCCCAGCAATATA
ATGGAGGGAGGAACCGGTTATTCTGTGGTAGTAGCTTGCACCTGAAGCGT
GCGACACAGCAGTAGCGGTTACGCGTCATGGTTCCGGCGAGTCATATGTA
TTATGATGTTGATACCGTTTTTTTTTCTCAGTATCTTTGGTTCGAAGCAC
GACACGACAAGTGGGCGAGAGTTTATTACTAATAGTTTCAAGAAGACGTC
ACGTTCTGATGGCGAGCACGAAGAATACTCTTTTCCTGTAGAAAATAACA
CATGTTGTTCTGAAGCTGCACACGCGAGACAGGGAAAAGCTGCCATGCTT
CGCGCAGACTGCAATTCTGCAGGCGTGTACAGCAACAAACTACAGTTTCC
TTCGCGTAAACGGTGGTTTACTCGCTAATTTACCGCCAATAGGTGGTGAT
GGCCCTCCCATCGTGAAGAACAATCGGGAAAAAAGGAAGGTGCAAACAAA
GTTTGGCGCTGATGGGGATTGAACCAGCAACCTCGGGCACTGAATAACCA
CACATGGATTCCTTCTGTCAAACTTTAAGACAATGGAAGGACGCGTCATT
CGAATACGCCTCTTCGTATGTTTTTCGCGCTTCGCGCGAAATAAATATAA
CTCGTTCCCGGGTTGCCCTACCCATGGTCGCTGAGCC
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protein sequence of EsuBft1096_3a-0001

>EsuBft1096_3 ID=EsuBft1096_3|Name=EsuBft1096_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=166bp
MEEDVGYIIGFRYKCERCVEYNGTVEESEQRPTSFNAWDVGCLDRLPDYV
SKEFFPFILTHRSGIDIRLVDRLADDLAHGKGFSAAAKYIRQAHTRKFMV
YQLKYVSLADARRSSRVSLFGAAPVPEKFGSSMTPRSIAVRCSRTTTCGT
CGARTSQNFLCWGWKA
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mRNA from alignment at Scaffold_501:267583..270036+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1096_3a-0001 ID=EsuBft1096_3a-0001|Name=EsuBft1096_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2454bp|location=Sequence derived from alignment at Scaffold_501:267583..270036+ (Ectocarpus subulatus male Bft15b)
ATGCGGGATCATTTCCGTACCGTCAAGAAGAACATCGACGCCAACATCAT
CCATCACAGCGGCGGCGTGGCGGCACCTAGGGGAGGCAGTGGAAAGTTCC
CCTACAGCAGCCCCCTCATTCTCCCGAAGTGTGCTACGATGCAGAACACC
TCAGGTATGCACCCGACGTCCGGGTTTCCTTTGCTGCTTTGAACAGCAGT
TTTGTACTCCTGGGGATTGACCTCTTTCCGTCCATAAGCTACGCGAACTC
GGTTTTCGTTTCTTATGCCTCCATGACCGCTGTCCACTACGTTTTTGCGC
AGGATTGCCGAAACTTTCTCCGTTCCTTCTGAAGCCACTGCTTGTTCGCG
TGGATACCCGAGTATTTGTTCCCGGAGCTAGCGCTGGCGGGAATTGCGTG
TCCAAGGTGCGGGAAAAGGGGTTCGCCAGATGGATGGAATCCCAAGGGGC
CACGACGGGTGTTCATGGAGGAAGACGTGGGGTACATCATAGGATTCCGG
TAAGCCCAGTCAGCGTGAGGTTTTTTGGTGGTACGCCGAGTATGTGGTGT
GTTACAATTTGTAAACCGCGCGGATCAGTTCGCCGCCTGTTTGACTGTCG
GCTGTCCCGCTTGTTTGTTCGCAGACAGGTACAAGTGCGAGCGGTGTGTT
GAATACAACGGGACCGTGGAGGAGTCGGAGCAGCGCCCTACCAGTTTCAA
CGCGTGGGATGTCGGATGCCTGGATCGCCTTCCTGACTACGTGTCGAAGG
AATTTTTTCCTTTCATTCTGACTCATCGGTCGGGTATCGACATTCGTCTT
GTCGACCGGCTCGCAGACGACCTGGCCCATGGGAAGGGCTTCTCCGCCGC
TGCCAAGTACATCCGCCAGGTAAATTTTTGTACCATTCTTTCATTTGGTC
AGGGAAGTTTCGCGAAACAATGTTCCCGGTACTGTCTACGACGTGCCGTT
CTGAAACATGTTGCACCCCTCCCGCCCCAAACTTATCGCATGCTCAATAA
TTTGTGCAGGCACACACGAGGAAGTTTATGGTGTATCAACTGAAGTACGT
GTCACTGGCTGACGCCCGGCGATCGAGCCGGGTGAGCTTGTTCGGAGCGG
CCCCAGTACCAGAGAAGTTTGGGAGTTCGATGACACCGAGAAGTATTGCG
GTGCGGTGCTCTCGGACCACTACCTGCGGGACGTGTGGCGCACGTACTTC
TCAGAACTTCCTGTGCTGGGGGTGGAAGGCGTGAAGTGGACGCGGGAGGA
CTATTTGCCCCGCGTGCACCAGCGCTGGGACGGAACCGTACTCGCTGGAG
ATGCTTCGTTCAAGTTTGCGAAGATCATACGGCTAGGGGCAACAGCGCAC
GGAGAGCGCACCCGCCCCGTGCACGGCATTTTCACAGTCTTCAACGATTA
CGAGCAGGTCCAGTAGCATGCGCCTCTCGCCGTCCGTAGATATGTTTCGT
TCGTACTTTGAGCTTGTTTCCCCTGTGGTGTTTCGTCGTAGGGGTGTTTG
CGTGTTAGTCCTTAGGCCTTGTGCCGTGTTGCCGTGTGGTGTGTGCGAAA
TTGGTTCCACCTGGGTTCTCTCATGGAGCTTGAGCCGTGGTCCGATTTTC
CACTCGCTGTGTTTCCTTCTTGCATGCCTCTTGCCAGGTTTCGGCGCGCA
CAGAGCGAACTGAAATACATTTCAGCACGCAAGAAAAGGGTGTTCCCGCC
CTGCCTTTGCAATGTCTGCCGTGGCTCATACACTGAAAGCTGAATTTTAC
TTGTATATCCGTAAAACGGGCATGGGGCTCCTGGTGTTCTTGTTGTATAA
AACCGCCCAGCAATATAATGGAGGGAGGAACCGGTTATTCTGTGGTAGTA
GCTTGCACCTGAAGCGTGCGACACAGCAGTAGCGGTTACGCGTCATGGTT
CCGGCGAGTCATATGTATTATGATGTTGATACCGTTTTTTTTTCTCAGTA
TCTTTGGTTCGAAGCACGACACGACAAGTGGGCGAGAGTTTATTACTAAT
AGTTTCAAGAAGACGTCACGTTCTGATGGCGAGCACGAAGAATACTCTTT
TCCTGTAGAAAATAACACATGTTGTTCTGAAGCTGCACACGCGAGACAGG
GAAAAGCTGCCATGCTTCGCGCAGACTGCAATTCTGCAGGCGTGTACAGC
AACAAACTACAGTTTCCTTCGCGTAAACGGTGGTTTACTCGCTAATTTAC
CGCCAATAGGTGGTGATGGCCCTCCCATCGTGAAGAACAATCGGGAAAAA
AGGAAGGTGCAAACAAAGTTTGGCGCTGATGGGGATTGAACCAGCAACCT
CGGGCACTGAATAACCACACATGGATTCCTTCTGTCAAACTTTAAGACAA
TGGAAGGACGCGTCATTCGAATACGCCTCTTCGTATGTTTTTCGCGCTTC
GCGCGAAATAAATATAACTCGTTCCCGGGTTGCCCTACCCATGGTCGCTG
AGCC
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Coding sequence (CDS) from alignment at Scaffold_501:267583..270036+

>EsuBft1096_3a-0001 ID=EsuBft1096_3a-0001|Name=EsuBft1096_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=501bp|location=Sequence derived from alignment at Scaffold_501:267583..270036+ (Ectocarpus subulatus male Bft15b)
ATGGAGGAAGACGTGGGGTACATCATAGGATTCCGGTACAAGTGCGAGCG
GTGTGTTGAATACAACGGGACCGTGGAGGAGTCGGAGCAGCGCCCTACCA
GTTTCAACGCGTGGGATGTCGGATGCCTGGATCGCCTTCCTGACTACGTG
TCGAAGGAATTTTTTCCTTTCATTCTGACTCATCGGTCGGGTATCGACAT
TCGTCTTGTCGACCGGCTCGCAGACGACCTGGCCCATGGGAAGGGCTTCT
CCGCCGCTGCCAAGTACATCCGCCAGGCACACACGAGGAAGTTTATGGTG
TATCAACTGAAGTACGTGTCACTGGCTGACGCCCGGCGATCGAGCCGGGT
GAGCTTGTTCGGAGCGGCCCCAGTACCAGAGAAGTTTGGGAGTTCGATGA
CACCGAGAAGTATTGCGGTGCGGTGCTCTCGGACCACTACCTGCGGGACG
TGTGGCGCACGTACTTCTCAGAACTTCCTGTGCTGGGGGTGGAAGGCGTG
A
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