EsuBft1095_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1095_9a-0001
Unique NameEsuBft1095_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_3contigScaffold_3:138432..144246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G0P6
ProteomeIdEsuBft1095_9
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsIPR016137
Protein domainsTMhelix
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsG3DSA
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2880.D7G0P6|-
Length158
Hectar predicted targeting categoryother localisation
Evalue7.91e-193
EggNOG OGs2D0MX@1|root,2SERP@2759|Eukaryota
Ec32 ortholog descriptionRGS domain
Ec32 orthologEc-09_001190.1
Date last modified2016-06-14
Date creation2016-06-14
DescriptionRegulator of G protein signaling domain
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0038032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1095_9aEsuBft1095_9aEctocarpus subulatus male Bft15bgeneScaffold_3 138432..144246 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1095_9a-0001EsuBft1095_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_3 138982..144246 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1095_9a-0001-exonEsuBft1095_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_3 138432..139064 +
EsuBft1095_9a-0001-exonagat-exon-5925Ectocarpus subulatus male Bft15bexonScaffold_3 139337..139636 +
EsuBft1095_9a-0001-exonagat-exon-5923Ectocarpus subulatus male Bft15bexonScaffold_3 141260..141530 +
EsuBft1095_9a-0001-exonagat-exon-5924Ectocarpus subulatus male Bft15bexonScaffold_3 142187..142432 +
EsuBft1095_9a-0001-exonagat-exon-5922Ectocarpus subulatus male Bft15bexonScaffold_3 144112..144246 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1095_9a-0001-exonagat-five_prime_utr-581Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_3 138432..138981 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1095_9a-0001-cdsEsuBft1095_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_3 138982..139064 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1095_9a-0001 ID=EsuBft1095_9a-0001|Name=EsuBft1095_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1585bp|location=Sequence derived from alignment at Scaffold_3:138432..144246+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GACTTCCGGATGAACGCTCCCATAGCTCGTGCCAAGCCTACTGCTTGTTG
CTGGAAAAGTTTTTTTCTGTTGCGAAATTGCTGACTTCTCGACAGCACAC
GCAGCGGATTTTTTTTCGCCGCACTTCCTGCATCGCGACCTGCGGACGCC
ACCGACCACTTCGCAATACACAGGATCGACTGACCTCTACCATTGCTGTG
TGCGCCGCTGGCATCCTCATCGCACCATTCCTCGTCGTTACCATCCTCGT
CTGCCGCCGCCTTGCCTTCTTCCTGATCCACGTCCATCAAATCGGCGCTG
TCGTGGCCGTCGGAGAGCGCATCACCAGCGCCGCGTGACGGAAGATCATG
TTGCTGCGCCGGCTTCGGTTTCTTCGGAACCGCCCGGCCATCGGCTCCGC
GCTTGCCGATTTTCTTCTTCTTTGGCCGTGCCATGGTGCTTGCTTGCTTG
CGTGCGTGTCTCGTGTTGTTCGGGCCGCCACGTGTGCCAGTTTGTTGTGG
GAGCGTCTTTCCCAACAGCAAAACAATCTCCGATAGCACGGCACGACAAA
ATGTGCACTATCTCGAGAACCAGAGTTTTCCCCGGAAAAACAAAAAATAC
CCATCTAGAGACTGATGAGACCGTTGAGTGTTTGTCTCCGATTTTGGCAT
GCACGAGCGGGTTCGGCATCACCTTGCGCTACACACTTACGATGTACGGT
TTGGTGGTGGGGAACTTGGAAATTTTAAACGTCGTCGGCTTCCCAGCGCT
GTGGATTGCCGAGATAGCGTTGATCATGACGGCATTACGGCTATTTGTCA
TGTACTACCCCAGCACAAGGGCCAAGTACGGAAGAGTGACCAGAGAGAAG
CCGTGGACTTGCGGCCTAGCAGCTACCTACCTTTTGGTGGAGACGGTGGT
GTGGTTGGCAGCTGCAGCGCAGGGCATCGAGAGGAACATCAGACCCATCC
AAGAGGTCCTGTATCACGCCCGAAGAAATGGCATTCCGAAAGGTGTCCAG
ATGCTGCTGGCGTTATCGTCGAGGGCGAGGCGGCGGAGCACTTCAACTAT
CGGCGGCGAGGAAGTTACCTCGGATGTTACACAGAATCCGAGCCAACACA
GCCGCGAGCCTTACATCGATTCGAACCGGCTCGCCGGCATCATGAACTAC
CTCCCGCTGCGGGAAGCATTCGGAGAGTTCTGCCAGAAATCGCTCTGCAG
CGAGTCTTTTCAGTTTCTCCTGGATGCTTCGGAGTTTAGAGGCGTGATCG
TCGAAGGCCCCGTCGACGGCGATGCCAACGGCAGCGCCGAAGAGGAGAAC
GAGGCACCAACACGCAGGTTGGGGGACGTGGCGACCATGGTGAACGAGTA
CATCAAGGACGGCGCTCCCTCGGAGATCAACATCGGCAGCGACACCAAGC
ACGACATCATGGAGCTGGCCAAGGCCGAAGCCTTCGCCTCGCTTGACCAG
GATGCGCGAAAGCTGATTTTCGTCAAAGCCGAGAGGGAGATCAAGAGGAT
CCTGGAAGATAACCTCATGGCCAGATTTCTGGTGTCCGCACAGTACAAAC
GGGCTGTGGACGGTGACGGAGATGGACGTGTATAA
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protein sequence of EsuBft1095_9a-0001

>EsuBft1095_9 ID=EsuBft1095_9|Name=EsuBft1095_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=344bp
MCTISRTRVFPGKTKNTHLETDETVECLSPILACTSGFGITLRYTLTMYG
LVVGNLEILNVVGFPALWIAEIALIMTALRLFVMYYPSTRAKYGRVTREK
PWTCGLAATYLLVETVVWLAAAAQGIERNIRPIQEVLYHARRNGIPKGVQ
MLLALSSRARRRSTSTIGGEEVTSDVTQNPSQHSREPYIDSNRLAGIMNY
LPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVEGPVDGDANGSAEEEN
EAPTRRLGDVATMVNEYIKDGAPSEINIGSDTKHDIMELAKAEAFASLDQ
DARKLIFVKAEREIKRILEDNLMARFLVSAQYKRAVDGDGDGRV
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mRNA from alignment at Scaffold_3:138432..144246+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1095_9a-0001 ID=EsuBft1095_9a-0001|Name=EsuBft1095_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5815bp|location=Sequence derived from alignment at Scaffold_3:138432..144246+ (Ectocarpus subulatus male Bft15b)
GACTTCCGGATGAACGCTCCCATAGCTCGTGCCAAGCCTACTGCTTGTTG CTGGAAAAGTTTTTTTCTGTTGCGAAATTGCTGACTTCTCGACAGCACAC GCAGCGGATTTTTTTTCGCCGCACTTCCTGCATCGCGACCTGCGGACGCC ACCGACCACTTCGCAATACACAGGATCGACTGACCTCTACCATTGCTGTG TGCGCCGCTGGCATCCTCATCGCACCATTCCTCGTCGTTACCATCCTCGT CTGCCGCCGCCTTGCCTTCTTCCTGATCCACGTCCATCAAATCGGCGCTG TCGTGGCCGTCGGAGAGCGCATCACCAGCGCCGCGTGACGGAAGATCATG TTGCTGCGCCGGCTTCGGTTTCTTCGGAACCGCCCGGCCATCGGCTCCGC GCTTGCCGATTTTCTTCTTCTTTGGCCGTGCCATGGTGCTTGCTTGCTTG CGTGCGTGTCTCGTGTTGTTCGGGCCGCCACGTGTGCCAGTTTGTTGTGG GAGCGTCTTTCCCAACAGCAAAACAATCTCCGATAGCACGGCACGACAAA ATGTGCACTATCTCGAGAACCAGAGTTTTCCCCGGAAAAACAAAAAATAC CCATCTAGAGACTGATGAGACCGTTGAGTGTTTGTGAGTCGGCAAAAAAA AACACCCCCTGTATACGAAACAAGTTTTTTCGGTTTTTCGGAAGTAAAAA GCCAAGGAAATAAACAAAAGCTCTCCGTCACGCCCTGCGCCTGTAAACAG GGCATTTGCCGGTACTTTCAGATTTTCGAACAACCACCTGTGTGCAGAGA AAAGTTGCACTTTGTGCATGGGAATTTTTTGGACAAATTGCTGTGCACGG ACCGTATGTACATACACTAACTTCCGGTGTACCGGCAACCTCTTTCCACA ATCAGGTCTCCGATTTTGGCATGCACGAGCGGGTTCGGCATCACCTTGCG CTACACACTTACGATGTACGGTTTGGTGGTGGGGAACTTGGAAATTTTAA ACGTCGTCGGCTTCCCAGCGCTGTGGATTGCCGAGATAGCGTTGATCATG ACGGCATTACGGCTATTTGTCATGTACTACCCCAGCACAAGGGCCAAGTA CGGAAGAGTGACCAGAGAGAAGCCGTGGACTTGCGGCCTAGCAGCTACCT ACCTTTTGGTGGAGACGGTGGTGTGGTTGGCAGCTGCAGCGCAGGGCATC GAGAGGTGAGGGAATGAAAATGAAGCAGGGTAGGCTACAGTGTTCGAAGT TCCGCGTCGGGCGAGCCCCCCTCAACGGTCACGGAAACGTGCAACTGCTG TACTCCTTCCTTATTTGGTGCGTGAGAGTGAGACCGAAACAGAGACAGAC AGACAGACACAGCGACAGAGATGAGAGGCACAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGAGACGCAGCCAGCCAGCCAGACTCA GGCAGCGATGACTATACAGAAACTACCTACATATCCTTACAACTCCTTTG AAATGTGTCTATGTTGTGTCTAACGCCGAGAGCCTACTCCGCCGCTATGA TTCGCAGAGTTGCAGTCATCATGACGAACCTGGGCCCGCTCTCGGCGTTC ATCACTCTCATGGCGGTGGTGTGCCTCGGCCGCCAGTTGAAGCGGATACA CGACCTCTGCAACATGGGCCGGGATATGCGCCTGGTTGGGATGATCCTGC TGATAGCTTTACGTGAGTGATGGACTACGTCCAGTGAACGTATGTACATC TAATCCCTTTTGCCTGATATATCGCGGTGGTTCATACGTTGGGGAGTGCT GCCCGGTATTGTCTTTTTGGTTGTCCGGCGAACACTTGTAAGCACGAGCC ACCGCCACAAGTACCTGCGCTGCATCAGGACTGCTACGTGCGATCGTTCG GTGGGTCACGCCTGTTCTCACCAAATTTATCGCACGTGCGTCCTCCATGT TGAAGCCTCCTGAAAATTGTGTGAATCTGTGGTTCGACTTCAAGTCCTTT CTTGGTAGAGGTCGTCTGTGAAAGCGTCGCAAAGTTTGCCCACGGATGCT AGGAAGGTACTTGGACGGGAAGCTGAACCGTTTTTAACGTATCAACCAGA ATTGCAACACCATCAACACCAACAGCAACTTTTCGATGAGGCTTCGCCGA ATATCGTGGCGATCTTACACGACATGAGACTTTCTTCGTCGCACTGAAAA TGCTTGACGGAGTTAGCTGACACCTGCCACCTCAAGCGATCGATATTGGT ACCCCCCCATGGCCGTTTCTTGCGCGGTGCCTGTTGTTCACTTGCCGTTT CCCAGCCGTTTTTGGGGCGATCCAGGTGCTACCACTCTCTGCCCTGGCGT TCAAGTACGCCAACGTCGTTTTCATGACCATGTCGCACTCGCCCGCGGTA TGGATTTTGTGAGTCCTACACCCCGTTCCATGTGTTGTGGTCGTTGCGAG CCTGCCCGGAGTCGGGATATGTACCACCCCTACCTTTCGTGGTGCCACCC CGGAGTTGTAGCTTCTTCGGGGATTTTTTTTTTGCTGTGCCCGGCCACCT TCCGCGGTGTTTAGAAAAGAGAGGGAATGATGCTCGGGGCTATTCAGGCC CTTGGCTTTTGGCCAAGGCTGATGAGCCATGCAATATGACGACATCCTTT AAGGAGTTCATGCTAGTCACTCGAAAACACAGAGCGCGCACACGTCTACC GGGTGGCCGGCCGTGGTCGCGATTCCCCTCATGCAGTCAACCGCCGTTCT TCGACATGCGTCTGATTGAGCAGCGACGTGCACATGTGCCTCCTCCTCCT GCTCCTCCTTCGTTGTGGGCTTGCGCAGGAACATCAGACCCATCCAAGAG GTCCTGTATCACGCCCGAAGAAATGGCATTCCGAAAGGTGTCCAGATGCT GCTGGCGTTATCGTCGAGGGCGAGGCGGCGGAGCACTTCAACTATCGGCG GCGAGGAAGTTACCTCGGATGTTACACAGAATCCGAGCCAACACAGCCGC GAGCCTTACATCGATTCGAACCGGCTCGCCGGCATCATGAACTACCTCCC GCTGCGGGAAGCATTCGGAGAGTTCTGCCAGAAATCGCTCTGCAGCGAGG TTAGTGGATGTGTGGTGTGTGACAAGCCGTGGAGAGTCAATGGCTAAATT TTCGTCGCTCACAATTTCTAGCTGCCCTACGCCCTCGCCTCTCCTTCTTC AATTTCAGACCTCCTAGAAACGAGGCCGCGCAGAATAGTTCATTCGTCTA CGGCGGTTGCCTTCATCTGCTCTAGCGAGACCGGCTTATCCGACCTCCGC CACGTGCACTTACGAACAAGCCGTATCTAATCCAACCATAGCTGGCATGG AGCACGGAATTCTGACTCTCTACGGTTGGGGTCGCAACAAGCGTGGCAGT AGGTGTTTTGGTATGGCGTACGAGGCGGCGTTCCGAAGGCGTCGACGTGG CTGGTGTATGCAAATCACACACGAGAGAGTGACAAGGGCGTGTGCTGCAG ACACTACAGCACGGGGACATTCTCCTTCCGAGCACTTTCTCGCTGAGGCG GGGCCTTTGGGCTGGATGATGTAATGTTCGATGTATCTCCCCGCTCCTCA CCTCCCGCTAGTGTGAACAAAGAATCGCCGTCCACGTGTCACGCCCCCGT GTATATTCTCCTTTTGGCCATCTGCACGTCGATCGCCCTCTGACTATCGA TCGGTTTTCTGATCACATCATGCTTGTACGTCTGTGCGCATCATCTCATT CGCAGTCTTTTCAGTTTCTCCTGGATGCTTCGGAGTTTAGAGGCGTGATC GTCGAAGGCCCCGTCGACGGCGATGCCAACGGCAGCGCCGAAGAGGAGAA CGAGGCACCAACACGCAGGTTGGGGGACGTGGCGACCATGGTGAACGAGT ACATCAAGGACGGCGCTCCCTCGGAGATCAACATCGGCAGCGACACCAAG CACGACATCATGGAGCTGGCCAAGGCCGAAGCCTTCGCCTCGCTTGACCA GGTGAGCAGTAATGAGGAAGTTCATTTTTTATCCTTCGCTTCGCTTGAAC ATGTGATAAGTAAAGACAAGGAAGGAGGCTCGAAGCTTTCACCTTGCTTG ACCAGGTGAGAAGCAAAGTGAACGGAGAATCCAGCACGGGCGTGCCTGGA GGCATGGCTTCGGCGTGCTCGGTTTTTCCTTTTTGGTCTCTACCGTACCT CCGAATACACAGGATACCACACTCCGGGGGTCGGTTTTCAAATATCGATA CATTGCTGCACGACCGCGAGGATGCGTAATCAAAATATGGATATGTTTCC TACGAGCCGGCTCCAACGCCGACATTGTCGGCACCGCCATTCTTCCTACC GCGGAGCGATCGAGCTTTGAAGGTTTGGTGCAGGGGGTGTGCTCTCTTGT GTCACTTGCGGTAGAAGTAACGAAAGTGGCGGTTTGGGCGCAGTCGGTGG GAACAAGCATGTTTTTAAGGATCACAAAAGGTTTTCCTTCGTCTTCAGCC TGGGTGCGCATCCGCCCCACGTGCGATAGCGCACGAGGCCATGCGCACCT CGACCCGTGGTGGAGGAAGAATCCATGAAGCCGTTCTTGGGTTTTGCTCA CGCCTCCACACTCTGCAACGAGAATACGCTCTCCCCGTCCCGAAGCTTGC CGTGGCGACAAATGGTTGGGTACTGCTGCGGCTGCCCCGCAAACAGTTTG AGCAAGTCGCGAAATTTTCGATGTGGACAGCCAATTTTTATCCATACATG CCTGCAAAGCGCTTCTTCCATGTCAGGCCGCGTCTGGCGTTTGTAGCGCG AATCGGAGGTGCTTTCGTCCGAGAATTGGCGTCGTCAACACGCTCAGGAC TTGACCTTGCCGCGAACACTCAGGAAATTTCGAAATATCAATACCCAAGT GGTTATGTTGCAATCAAAGTCCATGTACTCATGCATACAACAATGCTAGG GGCCTGGCAACACACCAACTCCCCCTTTGTCTTCATGGCCGAAACGTGGT GTATTTTCCTGCTGGAATTGTGGCGACGCGGTTATGGACGGTCCGGCTTT TGTTAAAACAACCAAAAAAGGCACACTCGGCCCACCTTCGACTGAATATG GTTCGTGCGTAGACCGGTTCCTTGGGGCTGAGGATCAATGCCCGTTGATC TGCTCTTCATTGTGGTTATCTCCCTCTCACATACGGTAATTGACAAGTCG TACGGCCACTTGCTGGAGAAATCCAGGTAGCTACAGATGGTCAACTCTTC TCTTCCAGAGCAGCGATTGACACGCGGACGGTGTCAAACCGTTCGCCCAG AGCAACAGACACGAACGAGGCATACGGTAGACATGATACCGATTATTATT GTTCACTTTTGCGGGGCTTTCATTCTCTTTTTCACATGGGGTGAGTTGAG CTGAAACTCCGGGTTCGACAACATCTTGAACATGTGTCGTGCAAGACTGT CGAAGAAGTCCCTTCGTAGTTCATGCAGCCTCTTCGACGCCTCCAGAGGG TAAACAAGGAAGCATGCGCCATTTCGATTCCCGTTTGATCGCCCCCTTAC TCCTAGCGCCGCGACCAGTTAGAACACGATGTTCGTACCTGTGCAAAAAC GGCCATCAGTAGGTGTGCAGATTCTGCGCGAAGCCGCCGGATCACTTTCG TTGTTGTTCTTTCGTCCTTCTCGTGTACAGGATGCGCGAAAGCTGATTTT CGTCAAAGCCGAGAGGGAGATCAAGAGGATCCTGGAAGATAACCTCATGG CCAGATTTCTGGTGTCCGCACAGTACAAACGGGCTGTGGACGGTGACGGA GATGGACGTGTATAA
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Coding sequence (CDS) from alignment at Scaffold_3:138432..144246+

>EsuBft1095_9a-0001 ID=EsuBft1095_9a-0001|Name=EsuBft1095_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1035bp|location=Sequence derived from alignment at Scaffold_3:138432..144246+ (Ectocarpus subulatus male Bft15b)
ATGTGCACTATCTCGAGAACCAGAGTTTTCCCCGGAAAAACAAAAAATAC
CCATCTAGAGACTGATGAGACCGTTGAGTGTTTGTCTCCGATTTTGGCAT
GCACGAGCGGGTTCGGCATCACCTTGCGCTACACACTTACGATGTACGGT
TTGGTGGTGGGGAACTTGGAAATTTTAAACGTCGTCGGCTTCCCAGCGCT
GTGGATTGCCGAGATAGCGTTGATCATGACGGCATTACGGCTATTTGTCA
TGTACTACCCCAGCACAAGGGCCAAGTACGGAAGAGTGACCAGAGAGAAG
CCGTGGACTTGCGGCCTAGCAGCTACCTACCTTTTGGTGGAGACGGTGGT
GTGGTTGGCAGCTGCAGCGCAGGGCATCGAGAGGAACATCAGACCCATCC
AAGAGGTCCTGTATCACGCCCGAAGAAATGGCATTCCGAAAGGTGTCCAG
ATGCTGCTGGCGTTATCGTCGAGGGCGAGGCGGCGGAGCACTTCAACTAT
CGGCGGCGAGGAAGTTACCTCGGATGTTACACAGAATCCGAGCCAACACA
GCCGCGAGCCTTACATCGATTCGAACCGGCTCGCCGGCATCATGAACTAC
CTCCCGCTGCGGGAAGCATTCGGAGAGTTCTGCCAGAAATCGCTCTGCAG
CGAGTCTTTTCAGTTTCTCCTGGATGCTTCGGAGTTTAGAGGCGTGATCG
TCGAAGGCCCCGTCGACGGCGATGCCAACGGCAGCGCCGAAGAGGAGAAC
GAGGCACCAACACGCAGGTTGGGGGACGTGGCGACCATGGTGAACGAGTA
CATCAAGGACGGCGCTCCCTCGGAGATCAACATCGGCAGCGACACCAAGC
ACGACATCATGGAGCTGGCCAAGGCCGAAGCCTTCGCCTCGCTTGACCAG
GATGCGCGAAAGCTGATTTTCGTCAAAGCCGAGAGGGAGATCAAGAGGAT
CCTGGAAGATAACCTCATGGCCAGATTTCTGGTGTCCGCACAGTACAAAC
GGGCTGTGGACGGTGACGGAGATGGACGTGTATAA
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