EsuBft1095_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1095_8a-0001
Unique Name	EsuBft1095_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_3	contig	Scaffold_3:145322..149989 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	161934.XP_010676254.1
ProteomeId	EsuBft1095_8
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	copia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon	3
Max annot lvl	35493\|Streptophyta
Length	3040
Hectar predicted targeting category	other localisation
Evalue	8.06e-20
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,3894V@33090\|Viridiplantae,3GY0Z@35493\|Streptophyta
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	T

Cross References

External references for this mRNA


Database	Accession
GO	0003824

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1095_8a	EsuBft1095_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_3 145322..149989 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1095_8a-0001-exon	agat-exon-5921	Ectocarpus subulatus male Bft15b	exon	Scaffold_3 145322..148071 -
EsuBft1095_8a-0001-exon	agat-exon-5920	Ectocarpus subulatus male Bft15b	exon	Scaffold_3 148113..148191 -
EsuBft1095_8a-0001-exon	EsuBft1095_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_3 149779..149989 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1095_8a-0001-exon	agat-three_prime_utr-928	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_3 145322..147668 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1095_8a-0001-cds	EsuBft1095_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_3 147669..148071 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1095_8a-0001	EsuBft1095_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_3 147669..149989 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_3:145322..149989-
coding sequence from alignment at Scaffold_3:145322..149989-

spliced messenger RNA

>EsuBft1095_8a-0001 ID=EsuBft1095_8a-0001|Name=EsuBft1095_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3040bp|location=Sequence derived from alignment at Scaffold_3:145322..149989- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAACAGCAGAGGTGCCTCGAATGTACGTCGTGGATCTCACCCTGGA
CGACCTGAATCTCGACCTGCCTAGTTCTCTGCTAGTTTTCCGTGCCGATA
CCGATGCCGGTGTCTGGCAGCGGAGGATGGGACATTGCAATGCGCGCGCC
CTGAAGCAGCTCTCGGATAAGGAAGGCACCGGCATCAAGTTCACCACCAA
CATTCGACCAGGGGAGGGTGGGAACAAAGTGCTGAGCATAGTAGATCAGC
TGAATGAGCGTTTCGAAACGGTGGACCTGGGAGGAGCCAGGGACAATACC
AACGCAGTGTTGGACAAGTTCGGCATGGCCGACGCGCGTCCGGCGACATG
TCCGTCTGAGGCTGGACCGGTGTCCGTCTTGGAGGACGAGGTGTTGTCAG
CGGAGGATACCACATATTTCCGCTCCGCCACAGGCTCGCTTTTTTATCTC
AGCAGGTGCACAAGGCCCGACATTACTCACTCCGTGATGGTTTTGACGCG
GAGTATGGCGAAACCAGGTTCGAGGGCGATGCAGAAACTCAAACGCGTAC
TCGGGTACCTGAAAGGGACGATATCAATCGGTGTGCGCTACGGCGAGGAT
GCCGAAGACGGAAACGTCATTACGGCGTTTGTCGGCTCAGATTTTGCAGG
CGACCTAGACAAGGGCTACTCCACCACGGGAGTCGTTCTGTAGATCGCTG
GTGGACCGGTAGAATGGACATCATCCAAGCAAACGGTGGTGGCGACCTCT
TCCGTCGAAGCAGAGTTCGTGGATTTGTCGAAGGGGTGTAACATCATCAA
GTAGTTTCCCGCCACCTGCTGGACACCATAAATCAGATTCAGGAAGAAGC
AACCGTGGTGTGGGAGGGAAAGTCGGGAGCTCTGAAATTAACTCGCAGCT
TCCGTATCACCCCAAGGACTAAGCACATTGACGTAAAGTTTCACCACGTA
AGGTCGCTGGTAGCTGATGGAGTCGTAGACGTGAAGCAAATAAATATCGA
CGCCGCTTCGGAAAGCGTATATTTTTACAAAAGAGCTAAACCCGTCGGAG
TTTCTCCGCGCCCGTGGCATGCTGTTAGGAGTTTGATCACCTCCCCTCTT
CGTAATCAGACTTCATGTCTGAAGGGTTGGATGATGTATGTGTGTGTATA
TGTTTAAAGAATAATCGGGAGATTTGTGTTGAAGGAAAACATTCGCTGCT
GATGCAACGCAGCTGAGAAAGGCAGAACAATTGTGAGTCAGAAGATACCA
TTGTTTCGAGAGGACAGTGAGAGAATTGGATCTGATGCATTGGTACTAGA
ATGACGTAGTTCTTCAGAGGACATGTTGGAGTAATTGCAGTGCAAGAACG
ACTCTATTCTACTGCATGGGTTCATGCAGTATTGTGAAGGCGTTGCCAAG
TGTGTAACCGTCAGGTGAAGACAGCTTGGGCGTCTGTGTGGATAATAATA
ATATCACGCTGTGTGTTTGCCTACCTAACCTCGCATCACATGCTAGCTAC
TTTGTAGCCACAGCTGAAGGAATAGCTGTACAGCGACTGCAGTGACAGTG
CAGTTGCCTCAACAGATGTATTCCAGTATGTGTAGCTGTAGGTGTTAGTA
CATGTGCGCGCGATTGAAGCCTCTGCTGCTGTGTGGATCATATTCGTGTG
GCCGAGCTGGAATAGTCTGCAGCCGCAGCAGTTGGTGATTTGAGAATGCA
CGAGAGCGGAGTTGTGTTGTGAGGTATAGTCTAGTCTAGCTGTAGACTGT
ACTGTAGACTACGAGAGCGGAGTTGTGTTGTGAGGTATAGCTGTAGAACA
ACTCTACCAATGTACTGTGCGTCTGCGTTGGTTGGACTCTGCATATGATA
CAGCAACAGAGCAAGATCTGTTCGTGCTGTTTTACGTGTTGTTGCCGAGG
TGTGCTGTTTCTTGTTTGCGTGAAGTCCGGCACGCCTGCTTGCCGCACAC
GTTTACGTCCCGCACGTCTCTGACTGGAGTTTGTGTACACTAAAGTCAGC
GTGTCTGCGTAATGCCAACCACGAGAGCCGAGCGGAGGAAACCAAATGTG
CTTGTCCTTTATGCGTTTGCTGCGTTCCACATCATCATAGACTCGGCGTA
TCATATGCACTCCGAGTATCATATTTTTTAACTTGTTTCTTCCATCCGTA
TCCGTGCTCGGCTTGGCGAAAACAAGTTCTACTCTATCCGTACCGGTCGT
GCGGGACGAGACGAACGGAATATCTATCCCGTCTCCCACGCAGGAGGCAG
ACACATGCGCCAGACAACAAACGCACGGAGGAGGACAGAGCCATCACCCT
TAGCGGTCAACGCATGGATTCAAAAATTATAAATAATTGTCTGGGTCAAA
GGTGGAGAAAGAGCAGGCCCGCCGATCAATAGTCTACATCTACAGCAACT
CAACACCAGCAGATATTTCGAGTCCCCAACCCTCAGATTGACATGTGCCC
ACTGGTGGGTCCTACAGCGGGCGCGGGCGAGGTCGCAGGCCTTGAACGAG
AGTACCTGTACTCTGAAATATTGTTGCTTTCGAAAACGTCCGATAGTTTC
TTCCGCTTGAGTGCAACGTTGCCTGTCAACTTCAGCCCTATGGCTTTCAT
GTAGGCGATCGCGACTGCGTCCGTGAGGGTGCAGATCTGTTCAAGCTTCA
AAGGTACCCCGCTAGCGACTCTTTCACTCGCTCTATCTCTGTCCCCTCTG
GCGCGCTTCGATGCCGGCGGCGGTGTTGAAGTAGAAGTCGAAGCAGAGGA
CGTCCTGACTCGAGATACCTCGTTCACGGTTGCGAGGTCGGCGGCGGCAT
CTCGGTCCCTTCCTGCCTTGGCCGCTATCTTGGATCGTTTTCGCGCCTTT
TCTACCGTAGAAGGCGCACGGATAAGTTTCGGCGCGCAACCCGTAGGTGC
TTGCGTACCTTGCGTTGTAACGTTTCGTCGCCTCGGCCATCACCTGGCTC
TTCTCGTCGCAGACCATCGTCGCTTCCGCGAGACAGGTGGCAAAGGCGTC
CAGCTCTGCATCACTTGTCGGAGTCAACGCCTTAACCCGT

protein sequence of EsuBft1095_8a-0001

>EsuBft1095_8 ID=EsuBft1095_8|Name=EsuBft1095_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=230bp
MSTAEVPRMYVVDLTLDDLNLDLPSSLLVFRADTDAGVWQRRMGHCNARA
LKQLSDKEGTGIKFTTNIRPGEGGNKVLSIVDQLNERFETVDLGGARDNT
NAVLDKFGMADARPATCPSEAGPVSVLEDEVLSAEDTTYFRSATGSLFYL
SRCTRPDITHSVMVLTRSMAKPGSRAMQKLKRVLGYLKGTISIGVRYGED
AEDGNVITAFVGSDFAGDLDKGYSTTGVVL

mRNA from alignment at Scaffold_3:145322..149989-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1095_8a-0001 ID=EsuBft1095_8a-0001|Name=EsuBft1095_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4668bp|location=Sequence derived from alignment at Scaffold_3:145322..149989- (Ectocarpus subulatus male Bft15b)
ATGTCAACAGCAGAGGTGCCTCGAATGTACGTCGTGGATCTCACCCTGGA
CGACCTGAATCTCGACCTGCCTAGTTCTCTGCTAGTTTTCCGTGCCGATA
CCGATGCCGGTGTCTGGCAGCGGAGGATGGGACATTGCAATGCGCGCGCC
CTGAAGCAGCTCTCGGATAAGGAAGGCACCGGCATCAAGTTCACCACCAA
CATTCGACCAGGTGACTGCGAAGTGTGCGATGTATTTAAAAGCAAGAAGG
CGAGTCACCGCCCAGTTGGCCGCGCCCGTTCACCGACGCGAATGATGCTT
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACG
TACATAACAACATACCATGAATCCTCTGACTGATGCACTATCCACAAGAG
ACACACTCGGGGTAATGCACCATCCACGAAGAACATTCCCACAGAACGTT
CCTTACTGTTCTGATAATATGTGGCTACTCAACGATCTTCAACGCAGACA
GTCCCGCAATGCAAACTGTCCAATCAAGTTGTTCTACGTCACTCTGTCGA
CACACACAGCAGCAACTATCACGAACATGCTTATGCATCTGGACCTGTGG
GGGAAACATGGTGTGCCATCGTACAGCGGATGTCAGCATATCGCAACGTN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNAGCCGACATCAGGACGGCGTTCCTCCACGCGAGGATGGAACC
GGGATCGAAACCAGTGTACGTCATTCCCCCGGAAGGATTCTCGTGCGACA
GCGAGAGAGCCAGGCAAGTCTGGAAGCTCAGAGCGTGGCTTTACGGGTTG
CGTTTTTCCCCAAAATGCTGGCGGAGCACTCTGCACGATTAACTCCTGAA
GATCGGATTTGTTGAGAGCACCGCTGAACCGTGCTTGTACATCCTGGACG
ACGGAGATGTGCTCCTTCTCGTTTATGAGGATGACATTCTGCTGACAGGG
GAGGGTGGGAACAAAGTGCTGAGCATAGTAGATCAGCTGAATGAGCGTTT
CGAAACGGTGGACCTGGGAGGAGCCAGGTTCTTACTCGGTATGGGAATCA
ACCGAGACAGAGCCGCAGGGACAATACCAACGCAGTGTTGGACAAGTTCG
GCATGGCCGACGCGCGTCCGGCGACATGTCCGTCTGAGGCTGGACCGGTG
TCCGTCTTGGAGGACGAGGTGTTGTCAGCGGAGGATACCACATATTTCCG
CTCCGCCACAGGCTCGCTTTTTTATCTCAGCAGGTGCACAAGGCCCGACA
TTACTCACTCCGTGATGGTTTTGACGCGGAGTATGGCGAAACCAGGTTCG
AGGGCGATGCAGAAACTCAAACGCGTACTCGGGTACCTGAAAGGGACGAT
ATCAATCGGTGTGCGCTACGGCGAGGATGCCGAAGACGGAAACGTCATTA
CGGCGTTTGTCGGCTCAGATTTTGCAGGCGACCTAGACAAGGGCTACTCC
ACCACGGGAGTCGTTCTGTAGATCGCTGGTGGACCGGTAGAATGGACATC
ATCCAAGCAAACGGTGGTGGCGACCTCTTCCGTCGAAGCAGAGTTCGTGG
ATTTGTCGAAGGGGTGTAACATCATCAAGTAGTTTCCCGCCACCTGCTGG
ACACCATAAATCAGATTCAGGAAGAAGCAACCGTGGTGTGGGAGGGAAAG
TCGGGAGCTCTGAAATTAACTCGCAGCTTCCGTATCACCCCAAGGACTAA
GCACATTGACGTAAAGTTTCACCACGTAAGGTCGCTGGTAGCTGATGGAG
TCGTAGACGTGAAGCAAATAAATATCGACGCCGCTTCGGAAAGCGTATAT
TTTTACAAAAGAGCTAAACCCGTCGGAGTTTCTCCGCGCCCGTGGCATGC
TGTTAGGAGTTTGATCACCTCCCCTCTTCGTAATCAGACTTCATGTCTGA
AGGGTTGGATGATGTATGTGTGTGTATATGTTTAAAGAATAATCGGGAGA
TTTGTGTTGAAGGAAAACATTCGCTGCTGATGCAACGCAGCTGAGAAAGG
CAGAACAATTGTGAGTCAGAAGATACCATTGTTTCGAGAGGACAGTGAGA
GAATTGGATCTGATGCATTGGTACTAGAATGACGTAGTTCTTCAGAGGAC
ATGTTGGAGTAATTGCAGTGCAAGAACGACTCTATTCTACTGCATGGGTT
CATGCAGTATTGTGAAGGCGTTGCCAAGTGTGTAACCGTCAGGTGAAGAC
AGCTTGGGCGTCTGTGTGGATAATAATAATATCACGCTGTGTGTTTGCCT
ACCTAACCTCGCATCACATGCTAGCTACTTTGTAGCCACAGCTGAAGGAA
TAGCTGTACAGCGACTGCAGTGACAGTGCAGTTGCCTCAACAGATGTATT
CCAGTATGTGTAGCTGTAGGTGTTAGTACATGTGCGCGCGATTGAAGCCT
CTGCTGCTGTGTGGATCATATTCGTGTGGCCGAGCTGGAATAGTCTGCAG
CCGCAGCAGTTGGTGATTTGAGAATGCACGAGAGCGGAGTTGTGTTGTGA
GGTATAGTCTAGTCTAGCTGTAGACTGTACTGTAGACTACGAGAGCGGAG
TTGTGTTGTGAGGTATAGCTGTAGAACAACTCTACCAATGTACTGTGCGT
CTGCGTTGGTTGGACTCTGCATATGATACAGCAACAGAGCAAGATCTGTT
CGTGCTGTTTTACGTGTTGTTGCCGAGGTGTGCTGTTTCTTGTTTGCGTG
AAGTCCGGCACGCCTGCTTGCCGCACACGTTTACGTCCCGCACGTCTCTG
ACTGGAGTTTGTGTACACTAAAGTCAGCGTGTCTGCGTAATGCCAACCAC
GAGAGCCGAGCGGAGGAAACCAAATGTGCTTGTCCTTTATGCGTTTGCTG
CGTTCCACATCATCATAGACTCGGCGTATCATATGCACTCCGAGTATCAT
ATTTTTTAACTTGTTTCTTCCATCCGTATCCGTGCTCGGCTTGGCGAAAA
CAAGTTCTACTCTATCCGTACCGGTCGTGCGGGACGAGACGAACGGAATA
TCTATCCCGTCTCCCACGCAGGAGGCAGACACATGCGCCAGACAACAAAC
GCACGGAGGAGGACAGAGCCATCACCCTTAGCGGTCAACGCATGGATTCA
AAAATTATAAATAATTGTCTGGGTCAAAGGTGGAGAAAGAGCAGGCCCGC
CGATCAATAGTCTACATCTACAGCAACTCAACACCAGCAGATATTTCGAG
TCCCCAACCCTCAGATTGACATGTGCCCACTGGTGGGTCCTACAGCGGGC
GCGGGCGAGGTCGCAGGCCTTGAACGAGAGTACCTGTACTCTGAAATATT
GTTGCTTTCGAAAACGTCCGATAGTTTCTTCCGCTTGAGTGCAACGTTGC
CTGTCAACTTCAGCCCTATGGCTTTCATGTAGGCGATCGCGACTGCGTCC
GTGAGGGTGCAGATCTGTTCAAGCTTCAAAGGTACCCCGCTAGCGACTCT
TTCACTCGCTCTATCTCTGTCCCCTCTGGCGCGCTTCGATGCCGGCGGCG
GTGTTGAAGTAGAAGTCGAAGCAGAGGACGTCCTGACTCGAGATACCTCG
TTCACGGTTGCGAGGTCGGCGGCGGCATCTCGGTCCCTTCCTGCCTTGGC
CGCTATCTTGGATCGTTTTCGCGCCTTTTCTACCGTAGAAGGCGCACGGA
TAAGTTTCGGCGCGCAACCCGTAGGTGCTTGCGTACCTTGCGTTGTAACG
TTTCGTCGCCTCGGCCATCACCTGGCTCTTCTCGTCGCAGACCATCGTCG
CTTCCGCGAGACAGGTGGCAAAGGCGTCCAGCTCTGCATCACTTGTCGGA
GTCAACGCCTTAACCCGT

Coding sequence (CDS) from alignment at Scaffold_3:145322..149989-

>EsuBft1095_8a-0001 ID=EsuBft1095_8a-0001|Name=EsuBft1095_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=693bp|location=Sequence derived from alignment at Scaffold_3:145322..149989- (Ectocarpus subulatus male Bft15b)
ATGTCAACAGCAGAGGTGCCTCGAATGTACGTCGTGGATCTCACCCTGGA
CGACCTGAATCTCGACCTGCCTAGTTCTCTGCTAGTTTTCCGTGCCGATA
CCGATGCCGGTGTCTGGCAGCGGAGGATGGGACATTGCAATGCGCGCGCC
CTGAAGCAGCTCTCGGATAAGGAAGGCACCGGCATCAAGTTCACCACCAA
CATTCGACCAGGGGAGGGTGGGAACAAAGTGCTGAGCATAGTAGATCAGC
TGAATGAGCGTTTCGAAACGGTGGACCTGGGAGGAGCCAGGGACAATACC
AACGCAGTGTTGGACAAGTTCGGCATGGCCGACGCGCGTCCGGCGACATG
TCCGTCTGAGGCTGGACCGGTGTCCGTCTTGGAGGACGAGGTGTTGTCAG
CGGAGGATACCACATATTTCCGCTCCGCCACAGGCTCGCTTTTTTATCTC
AGCAGGTGCACAAGGCCCGACATTACTCACTCCGTGATGGTTTTGACGCG
GAGTATGGCGAAACCAGGTTCGAGGGCGATGCAGAAACTCAAACGCGTAC
TCGGGTACCTGAAAGGGACGATATCAATCGGTGTGCGCTACGGCGAGGAT
GCCGAAGACGGAAACGTCATTACGGCGTTTGTCGGCTCAGATTTTGCAGG
CGACCTAGACAAGGGCTACTCCACCACGGGAGTCGTTCTGTAG