EsuBft1095_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1095_10a-0001
Unique NameEsuBft1095_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_3contigScaffold_3:125052..125317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G0P6
ProteomeIdEsuBft1095_10
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2880.D7G0P6|-
Length13
Hectar predicted targeting categorysignal peptide
Evalue1.57e-15
EggNOG OGs2D0MX@1|root,2SERP@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionRegulator of G protein signaling domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1095_10aEsuBft1095_10aEctocarpus subulatus male Bft15bgeneScaffold_3 125052..125317 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1095_10a-0001-exonEsuBft1095_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_3 125052..125176 +
EsuBft1095_10a-0001-exonagat-exon-5926Ectocarpus subulatus male Bft15bexonScaffold_3 125308..125317 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1095_10a-0001-cdsEsuBft1095_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_3 125052..125176 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1095_10a-0001EsuBft1095_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_3 125052..125317 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1095_10a-0001 ID=EsuBft1095_10a-0001|Name=EsuBft1095_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=135bp|location=Sequence derived from alignment at Scaffold_3:125052..125317+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCTCACGCTGTTGGTGATTGATGCCGTCATCCTCGTCGGTGCCTC
GGCGTATGCCTTGATCAGCCTTGGCTACATCGCAACCATGTGGCACTTGC
GGAAGAACTTTTTCATCGTGCTGCGGCCTTTCTAG
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protein sequence of EsuBft1095_10a-0001

>EsuBft1095_10 ID=EsuBft1095_10|Name=EsuBft1095_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=44bp
MGLTLLVIDAVILVGASAYALISLGYIATMWHLRKNFFIVLRPF
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mRNA from alignment at Scaffold_3:125052..125317+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1095_10a-0001 ID=EsuBft1095_10a-0001|Name=EsuBft1095_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=266bp|location=Sequence derived from alignment at Scaffold_3:125052..125317+ (Ectocarpus subulatus male Bft15b)
ATGGGGCTCACGCTGTTGGTGATTGATGCCGTCATCCTCGTCGGTGCCTC
GGCGTATGCCTTGATCAGCCTTGGCTACATCGCAACCATGTGGCACTTGC
GGAAGAACTTTTTCATCGTGCTGCGGTGAGAGTGTGCTGTTTGGGCTGAC
AGCAAACCAACAATAGCGAATATCTGAGTGTTTGGGTGTGAGATTTTTCT
AAGGTCCAGGATGAACTAAATCTGTGTCACCGGTTGCTCGGTGGTCGTCG
CGTTAGGCCTTTCTAG
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Coding sequence (CDS) from alignment at Scaffold_3:125052..125317+

>EsuBft1095_10a-0001 ID=EsuBft1095_10a-0001|Name=EsuBft1095_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=135bp|location=Sequence derived from alignment at Scaffold_3:125052..125317+ (Ectocarpus subulatus male Bft15b)
ATGGGGCTCACGCTGTTGGTGATTGATGCCGTCATCCTCGTCGGTGCCTC
GGCGTATGCCTTGATCAGCCTTGGCTACATCGCAACCATGTGGCACTTGC
GGAAGAACTTTTTCATCGTGCTGCGGCCTTTCTAG
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