EsuBft1094_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1094_9a-0001
Unique NameEsuBft1094_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_26contigScaffold_26:301234..303462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FI08
ProteomeIdEsuBft1094_9
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length172
Evalue5.26e-191
EggNOG OGs2DCSR@1|root,2S5KN@2759|Eukaryota
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_9aEsuBft1094_9aEctocarpus subulatus male Bft15bgeneScaffold_26 301234..303462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_9a-0001EsuBft1094_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_26 301306..303462 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_9a-0001-exonEsuBft1094_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_26 301234..301549 -
EsuBft1094_9a-0001-exonagat-exon-88953Ectocarpus subulatus male Bft15bexonScaffold_26 301685..302323 -
EsuBft1094_9a-0001-exonagat-exon-88952Ectocarpus subulatus male Bft15bexonScaffold_26 302615..303330 -
EsuBft1094_9a-0001-exonagat-exon-88954Ectocarpus subulatus male Bft15bexonScaffold_26 303409..303462 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_9a-0001-exonagat-three_prime_utr-916Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_26 301234..301305 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_9a-0001-cdsEsuBft1094_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_26 301306..301549 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1094_9a-0001 ID=EsuBft1094_9a-0001|Name=EsuBft1094_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1725bp|location=Sequence derived from alignment at Scaffold_26:301234..303462- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCTATTTGCTCGTGCTGGCTGCGCGCAACTCCGCGGGCGCTGCTCG
CAACCTTTTTGTGCCTCCCGGAAGAGCCACAGTAACTCCCGTCACAAAAG
GGTTAAAAGATGTTCGTGGAGCGGTNGACGAGAAGGCCATTGTCGCGGCT
GCAGCAGACGACGAGAAGAAGAGCCTCCTCGCCAAGCAGCAGCCTAAGCG
GTGGTTTCCTGAGGCAGTAAAGATGCTTTACAAGATGTTCTTGGAGCGGC
GTAAGAGGAAGCTGAAGGTATCGACCCTGTGGCTGACGATCACGTTTCGG
AAGCTCGTGCGAGAGATGTATCCCGGGGACCAACGGGCGGCGGCGTTCCG
TGCATCCTTCAGGTGGGCACGAAAATGGGCCAAGAGGCACAACCTGTCCA
AAAGACGTCGGACCAACCTCAAGAACAAGTCTGTTAAGGAGCGCCGACCA
AAGGCCCAGCGCTTCCACCGACTGTTTCGCAAGCTCCTGCAAGAGCCGGT
ACGGTACAGGGCGCCCGATGAGTCGGACGTATCGGCGATTACGACAGTCG
CAGAGAGGGAGTCCAGAGTTCCCAAGTATGGCCAATTCCAGCTCTGGGAG
CTTTGGAATGTGGATCATGCGCCTTTGGCATTCGTAAACGGGCTGCTCTA
TACGTGGGGGGAGCGAGGTGCGAAGCGTGTCGCCATCTCACAGCCCTTTC
CTGGCCGACAAAAAAGGCAATGCACCATGCAAGTCATCTTTGGTCCGGGT
GAGAAGACCTTGCGAAGTCGGCGANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
TGGCCCTTCGGAGTGCACGGACGAGGTGCAGCCAGTTGATGCAGGAGCCG
GACGATTTATCAAGGTGGAAGCTGGGAGGCAGATGGTCATGTGGCTCGAG
CAGTGGGACAACCTCGAGAGGTGGGAAACCGCGGCGCTGACAGCTTCTGA
TCAGCGGGTACTGATCACTCAGTGGATTGGAGCGGCCATGGCAAGACTCA
ACAGTCAACAGGCGTTCCGATTCCGGCTTTTCGAAAAGTGCGGGATGGCC
ATGACTGTGGACGGCTCAGGCGATGATCGGATCACCTTGGAGGGTTTGGA
CAAGCCGTACACCTTCGCAAACGATGAAGACTGTAGCGAGGACGAAGAGT
ATTTAGAGAACGGCAGCGATGAGCCTGAGGGGCGCGGGAAGGAGGGCGAT
GGACGTGAGACGGTCGTGGAGGGCGCTGATTCCAGCGATGATGAAGACGA
CGACGGTAAGTTCGGCTTTGACACCGTACTTCTTGTGGTGTTTCACGGTG
CCCCGTTCGCGGGCACGTCTCACACCCAGACCGATGAGCTAGCTCTTCTC
GACGACGACGACAGCATGGACCCACAAGACCCGGAGGACGAGACACAAGG
AATGGAGATCCCGACAGGCTTTCGCATTCAAGAAGTCAAACCCGTTGCTC
TTGGCAGATTGCTTTTGCGACGTGGAGTGCTCGTTAGGCTGGGGATGGGG
TAGTTTGGAGGGTTGATCATTCAGCAATCTCAGCAGGACACTCGCCACCT
GTACGGCTACTGTGTGCAGCTGGAG
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protein sequence of EsuBft1094_9a-0001

>EsuBft1094_9 ID=EsuBft1094_9|Name=EsuBft1094_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=550bp
MPYLLVLAARNSAGAARNLFVPPGRATVTPVTKGLKDVRGAVDEKAIVAA
AADDEKKSLLAKQQPKRWFPEAVKMLYKMFLERRKRKLKVSTLWLTITFR
KLVREMYPGDQRAAAFRASFRWARKWAKRHNLSKRRRTNLKNKSVKERRP
KAQRFHRLFRKLLQEPVRYRAPDESDVSAITTVAERESRVPKYGQFQLWE
LWNVDHAPLAFVNGLLYTWGERGAKRVAISQPFPGRQKRQCTMQVIFGPG
EKTLRSRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXGPSECTDEVQPVDAGAGRFIKVEAGRQMVMWLE
QWDNLERWETAALTASDQRVLITQWIGAAMARLNSQQAFRFRLFEKCGMA
MTVDGSGDDRITLEGLDKPYTFANDEDCSEDEEYLENGSDEPEGRGKEGD
GRETVVEGADSSDDEDDDGKFGFDTVLLVVFHGAPFAGTSHTQTDELALL
DDDDSMDPQDPEDETQGMEIPTGFRIQEVKPVALGRLLLRRGVLVRLGMG
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mRNA from alignment at Scaffold_26:301234..303462-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1094_9a-0001 ID=EsuBft1094_9a-0001|Name=EsuBft1094_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2229bp|location=Sequence derived from alignment at Scaffold_26:301234..303462- (Ectocarpus subulatus male Bft15b)
ATGCCCTATTTGCTCGTGCTGGCTGCGCGCAACTCCGCGGGCGCTGCTCG
CAACGTATGTGTGCGGCCAGTCAGACTTCTTCGTCCTTCTTCCCCTTTCT
ATTTCCAAATTTCGGACTATTGGTGTGAACAGCTTTTTGTGCCTCCCGGA
AGAGCCACAGTAACTCCCGTCACAAAAGGGTTAAAAGATGTTCGTGGAGC
GGTNGACGAGAAGGCCATTGTCGCGGCTGCAGCAGACGACGAGAAGAAGA
GCCTCCTCGCCAAGCAGCAGCCTAAGCGGTGGTTTCCTGAGGCAGTAAAG
ATGCTTTACAAGATGTTCTTGGAGCGGCGTAAGAGGAAGCTGAAGGTATC
GACCCTGTGGCTGACGATCACGTTTCGGAAGCTCGTGCGAGAGATGTATC
CCGGGGACCAACGGGCGGCGGCGTTCCGTGCATCCTTCAGGTGGGCACGA
AAATGGGCCAAGAGGCACAACCTGTCCAAAAGACGTCGGACCAACCTCAA
GAACAAGTCTGTTAAGGAGCGCCGACCAAAGGCCCAGCGCTTCCACCGAC
TGTTTCGCAAGCTCCTGCAAGAGCCGGTACGGTACAGGGCGCCCGATGAG
TCGGACGTATCGGCGATTACGACAGTCGCAGAGAGGGAGTCCAGAGTTCC
CAAGTATGGCCAATTCCAGCTCTGGGAGCTTTGGAATGTGGATCATGCGC
CTTTGGCATTCGTAAACGGGCTGCTCTATACGTGGGGGGAGCGAGGTGCG
AAGCGTGTCGCCATCTCACAGCCCTTTCCTGGCCGACAAAAAAGGCAATG
CACCATGCAAGTCATCTTTGGTCCGGGTGAGAAGACCTTGCGAAGTCGGT
GATTTTCCGAGGCGCGGGGAAGCGAATCTCGCCGGTGAAGAAGGCCGCGT
ACCACAATCTAGGGTTCCTACCTTTTTTTGACCCGAGAATTTTGACACAA
GGCAGCTCGGGTCAAAAATAACCGCTCGTGTCAAAATTTCAGGTCAAAAA
AAGCACAGGTGGGAACCCCTAAAATGTCGTGGACGTGTTTTTCCAGGAAA
ATGCTTGGGCCGACCAAAAGTTCTGTATGGAGTGGGCTAAGAGGTCCTAC
CGCGAAGGCCTGATGCGCGGGCGGGGTGAGCTTCCCAAGGCGANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNATGGCCCTTCGGAGTGCACGGACGAGGTGCAG
CCAGTTGATGCAGGAGCCGGACGATTTATCAAGGTGGAAGCTGGGAGGCA
GATGGTCATGTGGCTCGAGCAGTGGGACAACCTCGAGAGGTGGGAAACCG
CGGCGCTGACAGCTTCTGATCAGCGGGTACTGATCACTCAGTGGATTGGA
GCGGCCATGGCAAGACTCAACAGTCAACAGGCGTTCCGATTCCGGCTTTT
CGAAAAGTGCGGGATGGCCATGACTGTGGACGGCTCAGGCGATGATCGGA
TCACCTTGGAGGGTTTGGACAAGCCGTACACCTTCGCAAACGATGAAGAC
TGTAGCGAGGACGAAGAGTATTTAGAGAACGGCAGCGATGAGCCTGAGGG
GCGCGGGAAGGAGGGCGATGGACGTGAGACGGTCGTGGAGGGCGCTGATT
CCAGCGATGATGAAGACGACGACGGTAAGTTTGATTTGCACTTGACCCAA
TCTTTGAAATTTCCTTGTTGATGATGATGTCCATGTTGATATTTGCTTGG
ATTTGGCTGACGTGCTGTTTCCGCGTTCACGACTACGAGCAAATTTGATG
GGTTCATGTTGAGGTTCGGCTTTGACACCGTACTTCTTGTGGTGTTTCAC
GGTGCCCCGTTCGCGGGCACGTCTCACACCCAGACCGATGAGCTAGCTCT
TCTCGACGACGACGACAGCATGGACCCACAAGACCCGGAGGACGAGACAC
AAGGAATGGAGATCCCGACAGGCTTTCGCATTCAAGAAGTCAAACCCGTT
GCTCTTGGCAGATTGCTTTTGCGACGTGGAGTGCTCGTTAGGCTGGGGAT
GGGGTAGTTTGGAGGGTTGATCATTCAGCAATCTCAGCAGGACACTCGCC
ACCTGTACGGCTACTGTGTGCAGCTGGAG
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Coding sequence (CDS) from alignment at Scaffold_26:301234..303462-

>EsuBft1094_9a-0001 ID=EsuBft1094_9a-0001|Name=EsuBft1094_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1653bp|location=Sequence derived from alignment at Scaffold_26:301234..303462- (Ectocarpus subulatus male Bft15b)
ATGCCCTATTTGCTCGTGCTGGCTGCGCGCAACTCCGCGGGCGCTGCTCG
CAACCTTTTTGTGCCTCCCGGAAGAGCCACAGTAACTCCCGTCACAAAAG
GGTTAAAAGATGTTCGTGGAGCGGTNGACGAGAAGGCCATTGTCGCGGCT
GCAGCAGACGACGAGAAGAAGAGCCTCCTCGCCAAGCAGCAGCCTAAGCG
GTGGTTTCCTGAGGCAGTAAAGATGCTTTACAAGATGTTCTTGGAGCGGC
GTAAGAGGAAGCTGAAGGTATCGACCCTGTGGCTGACGATCACGTTTCGG
AAGCTCGTGCGAGAGATGTATCCCGGGGACCAACGGGCGGCGGCGTTCCG
TGCATCCTTCAGGTGGGCACGAAAATGGGCCAAGAGGCACAACCTGTCCA
AAAGACGTCGGACCAACCTCAAGAACAAGTCTGTTAAGGAGCGCCGACCA
AAGGCCCAGCGCTTCCACCGACTGTTTCGCAAGCTCCTGCAAGAGCCGGT
ACGGTACAGGGCGCCCGATGAGTCGGACGTATCGGCGATTACGACAGTCG
CAGAGAGGGAGTCCAGAGTTCCCAAGTATGGCCAATTCCAGCTCTGGGAG
CTTTGGAATGTGGATCATGCGCCTTTGGCATTCGTAAACGGGCTGCTCTA
TACGTGGGGGGAGCGAGGTGCGAAGCGTGTCGCCATCTCACAGCCCTTTC
CTGGCCGACAAAAAAGGCAATGCACCATGCAAGTCATCTTTGGTCCGGGT
GAGAAGACCTTGCGAAGTCGGCGANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
TGGCCCTTCGGAGTGCACGGACGAGGTGCAGCCAGTTGATGCAGGAGCCG
GACGATTTATCAAGGTGGAAGCTGGGAGGCAGATGGTCATGTGGCTCGAG
CAGTGGGACAACCTCGAGAGGTGGGAAACCGCGGCGCTGACAGCTTCTGA
TCAGCGGGTACTGATCACTCAGTGGATTGGAGCGGCCATGGCAAGACTCA
ACAGTCAACAGGCGTTCCGATTCCGGCTTTTCGAAAAGTGCGGGATGGCC
ATGACTGTGGACGGCTCAGGCGATGATCGGATCACCTTGGAGGGTTTGGA
CAAGCCGTACACCTTCGCAAACGATGAAGACTGTAGCGAGGACGAAGAGT
ATTTAGAGAACGGCAGCGATGAGCCTGAGGGGCGCGGGAAGGAGGGCGAT
GGACGTGAGACGGTCGTGGAGGGCGCTGATTCCAGCGATGATGAAGACGA
CGACGGTAAGTTCGGCTTTGACACCGTACTTCTTGTGGTGTTTCACGGTG
CCCCGTTCGCGGGCACGTCTCACACCCAGACCGATGAGCTAGCTCTTCTC
GACGACGACGACAGCATGGACCCACAAGACCCGGAGGACGAGACACAAGG
AATGGAGATCCCGACAGGCTTTCGCATTCAAGAAGTCAAACCCGTTGCTC
TTGGCAGATTGCTTTTGCGACGTGGAGTGCTCGTTAGGCTGGGGATGGGG
TAG
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