EsuBft1094_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1094_6a-0001
Unique NameEsuBft1094_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_26contigScaffold_26:281880..285514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6669.EFX68856
ProteomeIdEsuBft1094_6
Protein domainsCoil
Protein domainsIPR006600
Protein domainsPTHR19303
Protein domainsIPR009057
Protein domainsIPR004875
Ownerapollo_admin@sb-roscoff.fr
Notejerky protein homolog-like os:homo sapiens gn:jrkl pe:2 sv:2 [Automatic annotation]
Nb exon4
Max annot lvl33208|Metazoa
Length2271
Hectar predicted targeting categoryother localisation
Evalue4.38e-47
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota,38HJW@33154|Opisthokonta,3BCG5@33208|Metazoa,3CXR0@33213|Bilateria,420II@6656|Arthropoda
Date last modified2016-06-15
Date creation2016-06-15
DescriptionJerky protein homolog-like
COG categoryBD
Cross References
External references for this mRNA
DatabaseAccession
GO0003677
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_6aEsuBft1094_6aEctocarpus subulatus male Bft15bgeneScaffold_26 281880..285514 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_6a-0001EsuBft1094_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_26 282189..285514 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_6a-0001-exonagat-exon-88949Ectocarpus subulatus male Bft15bexonScaffold_26 281880..282795 -
EsuBft1094_6a-0001-exonagat-exon-88950Ectocarpus subulatus male Bft15bexonScaffold_26 283348..283647 -
EsuBft1094_6a-0001-exonEsuBft1094_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_26 283967..284556 -
EsuBft1094_6a-0001-exonagat-exon-88951Ectocarpus subulatus male Bft15bexonScaffold_26 285050..285514 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_6a-0001-exonagat-three_prime_utr-913Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_26 281880..282188 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_6a-0001-cdsEsuBft1094_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_26 282189..282795 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1094_6a-0001 ID=EsuBft1094_6a-0001|Name=EsuBft1094_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2271bp|location=Sequence derived from alignment at Scaffold_26:281880..285514- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTTGTGCGGAAGGTGAACTGTGCCTTCAACAAGACAGGACACCGCA
ACCCCCTCATGGCCACCCCTGCAAGGGAGGATGTGGCGGGCGGCTCCACG
GCAATTGCGGCAGCGGGTTTGAGGACAACGAGCAGCACCGCATCTGCACC
ACGTGTGTCGCCAGGACTAGCAAGCGCAAAGCGACACCAGCTAAGGGTGC
TGGGGCGGGACCATCTAAACGCCAGAAGCAGACGAGCGGGGGATGCAAGA
AGGGAACGGGTTTTCGTGCGCGGCTGGACAACAACAAGAAGCTCGAGATT
CTGAAGATGCTGGATCAGAAGGTGTCTCACGCACAGATTGCAGACCGCTT
CAAGTGCTTGCTTCGGTTTATTGGGACCGTGAAGGCTGGCCGGCAGAAGG
TGGAGACAGCAACTGCTGCAGGCTGCAGCAGCCAGAAAACTGCACGCAAA
GGAGATTTTCCGGAGGTGGATGAGATAGCTCTTGATCTACTCGACAAAGC
CCGGAAGGCCAAGATGCCCGTCACACGCGATGTCCTTCGAAGCTTCGGCC
GGTCTACCAGGGCAACCCTGCTGGCTGACACCGCAACTTCTGCAGCAGTG
AGGGAGAGGGTGGAGGACTTCAAGGCCGGCAAGAGGTGGGCGAAGAACTT
CGTGAAGCGCAACAAGATCCAGAGCGTGAGACTTCATGGCGAGGCTGGTA
GCGTCGACAAGGAGGCCATCAAGGAGGGCATGGAGGAAATCAGGGCCCTT
TGCGAGAAGTACCCGGCTAGGTTCATCGTCAACGTCGACGAGTCAGGCCT
CCAGTGGAAGCTCATGCCCAGGCGCACGTACCTTTCCACCTCGGAGGATC
GGAAGACGGCGCGGGGCTCAAAGAGCATGAACTTCAAGGACGGACTGTCT
GCCATCATGTGCTGCAATGCCGACGGCACTGCGAAGGTTTACATGGCCAT
CATGGGGAGGGCAAAGGAACCCCGCTGCTTCAAGAACGGGGGTTCACCTC
TGAAGTACTTCTCGCAGACCAACGCGTGGTCCGACTCCGCGACGTTCCTC
AAGTGTGATCTAGTGGATGATCGCGGGCAAGTTACCGTCAAGACCTACCC
TCCGCTGTGCACCGCCGTACACCAACCCATGGATTTGGGGGTCATCGCCA
AGACGAAGGTCAACTACAGGAAGGAGCTGCTCGATGTGAAGACATCAACC
ATGTTGGTGGCTGACACACTTCGCGCCCAGGCCAAAGCCCGCAAGATGAT
TGTCGGGACAATGGGGCTAGCGCAAGGGCACCAACCTCACGTGCGGGACG
CCGCTGAACTTCTCCAGAAAGCATGGGCCAGCGTCACCGCCCAAGACATC
GCCAGGTGCTTTGTCAAAGCCGAGTCGCTTCCGGAGGAGATGGCGGCTGA
GCTCACCAAGCAACACGGAAAGACCCGGTTCAACGTCGCCGAGCCTGACC
TGAAGGCTCTCGCAGAGACTGTCAACACGTTGAGCACGAGCGTGCAGGAC
GCGCAGAAGCAGGGATCCCGCGTCGTGGACGAGGAGATCAGCGAACTGTT
GGCAGAACTCAACATCGAACCCGGAAAGCCGGTCGCGGGGGAAGCGGTGG
CCGCAATTCAGCGGTGGGCTACCATCGAGGACGACGAGGAGGTGGTAGAG
GCTCTTCGATTGGACGCGGTGGAAGACATGACAGCACTGCTGGCTGGAAC
GAACTTGTCTACCGGCGGCGACGACGAGGAGGACGAACAGGACCAGGGCG
GCGGCGGTGAGAACACGGGGCGCGAGCGCCGTGCCCCACGTGCGCCACCG
GGTTATGAAGAACTGTCGTCTCACTTCGGCGCCCTGGAAGTGGCAGCAGA
GGACAGTGGCAACGGAGACGCGGCGTTCTACCTAACGAAAGCGAAGATGT
CGATGATCGCAGCGCATTCCGCTAGGCGGGTGCGCCAGACAGACATTAGA
GGATTTGTCTAGAGGATTTGTCGCGACGTAGAGTTCATGATTGTTTCTTT
TTCTTGCGGTTCGCTTCCTGTCGTGTACTTGTAGTTTTTTTTTTTTTTCT
TGCAACATCGAAGCGGGTACGCCAGGCAGACACTCCAGTGTCGCGACGTA
GTTTGGGGGGGAGATACAACTGTAGTGCAGTAGTATTGATTTTTGTTTTC
TTGCAGTGCGCTTCCTGTCGTGTTTCTTTTTCTGTTTTGTCTTTTGTATC
TTGCAACATCGAAGGAGGGGCTCTAGGGCTGAGATATAGCTGCGTCCACT
CTGTACGAACGGGAGCTTTAC
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protein sequence of EsuBft1094_6a-0001

>EsuBft1094_6 ID=EsuBft1094_6|Name=EsuBft1094_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=653bp
MPCAEGELCLQQDRTPQPPHGHPCKGGCGGRLHGNCGSGFEDNEQHRICT
TCVARTSKRKATPAKGAGAGPSKRQKQTSGGCKKGTGFRARLDNNKKLEI
LKMLDQKVSHAQIADRFKCLLRFIGTVKAGRQKVETATAAGCSSQKTARK
GDFPEVDEIALDLLDKARKAKMPVTRDVLRSFGRSTRATLLADTATSAAV
RERVEDFKAGKRWAKNFVKRNKIQSVRLHGEAGSVDKEAIKEGMEEIRAL
CEKYPARFIVNVDESGLQWKLMPRRTYLSTSEDRKTARGSKSMNFKDGLS
AIMCCNADGTAKVYMAIMGRAKEPRCFKNGGSPLKYFSQTNAWSDSATFL
KCDLVDDRGQVTVKTYPPLCTAVHQPMDLGVIAKTKVNYRKELLDVKTST
MLVADTLRAQAKARKMIVGTMGLAQGHQPHVRDAAELLQKAWASVTAQDI
ARCFVKAESLPEEMAAELTKQHGKTRFNVAEPDLKALAETVNTLSTSVQD
AQKQGSRVVDEEISELLAELNIEPGKPVAGEAVAAIQRWATIEDDEEVVE
ALRLDAVEDMTALLAGTNLSTGGDDEEDEQDQGGGGENTGRERRAPRAPP
GYEELSSHFGALEVAAEDSGNGDAAFYLTKAKMSMIAAHSARRVRQTDIR
GFV
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mRNA from alignment at Scaffold_26:281880..285514-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1094_6a-0001 ID=EsuBft1094_6a-0001|Name=EsuBft1094_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3635bp|location=Sequence derived from alignment at Scaffold_26:281880..285514- (Ectocarpus subulatus male Bft15b)
ATGCCTTGTGCGGAAGGTGAACTGTGCCTTCAACAAGACAGGACACCGCA
ACCCCCTCATGGCCACCCCTGCAAGGGAGGATGTGGCGGGCGGCTCCACG
GCAATTGCGGCAGCGGGTTTGAGGACAACGAGCAGCACCGCATCTGCACC
ACGTGTGTCGCCAGGACTAGCAAGCGCAAAGCGACACCAGCTAAGGGTGC
TGGGGCGGGACCATCTAAACGCCAGAAGCAGACGAGCGGGGGATGCAAGA
AGGGAACGGGTTTTCGTGCGCGGCTGGACAACAACAAGAAGCTCGAGATT
CTGAAGATGCTGGATCAGAAGGTGTCTCACGCACAGATTGCAGACCGCTT
CAAGTGCTTGCTTCGGTTTATTGGGACCGTGAAGGCTGGCCGGCAGAAGG
TGGAGACAGCAACTGCTGCAGGCTGCAGCAGCCAGAAAACTGCACGCAAA
GGAGATTTTCCGGAGGTGCGCTACATGCAATGCTGTGACGATGGGTTATT
TCGTTATTTCCCCCGCCATTGTTTTTGCCGGCCTTTTATTTTCGACCCTG
GTTCGTTCGCTGGTGGATGTCCAAAATTTTTTTCGCATTCTTTCTCCTTT
GGTTTGTTGTCTTTTTTCGGCTTTTTCTTTCCATTTTTTGTCTCTCGCGT
TTCTTTTTTCTCCGCTTTCATCGTTCATTCGTTCCTTGTGCTCTCGCACA
CACCCTCTTTTCAATTTTGAACCAGTAAATTACTACAACACGGCAGCGCT
TCTTGTTTGTACCTGCCGCATTTTTGTCCAAATGTACTTCACACTAATGC
ACAATTGGGAACAAAACTCGAACGTGTGAGCTTAGTGTAACAGGGTACGC
TTCGTCCGCCTGTCCGCGCCGCGCAGTGTAGGTTAGCATGCTTACGTTCG
AAACTAACCGTTCGATCTTTTGCACTCTCTGCGTTGTTTACTCGTTTTTT
GGCGGCAGGTGGATGAGATAGCTCTTGATCTACTCGACAAAGCCCGGAAG
GCCAAGATGCCCGTCACACGCGATGTCCTTCGAAGCTTCGGCCGGTCTAC
CAGGGCAACCCTGCTGGCTGACACCGCAACTTCTGCAGCAGTGAGGGAGA
GGGTGGAGGACTTCAAGGCCGGCAAGAGGTGGGCGAAGAACTTCGTGAAG
CGCAACAAGATCCAGAGCGTGAGACTTCATGGCGAGGCTGGTAGCGTCGA
CAAGGAGGCCATCAAGGAGGGCATGGAGGAAATCAGGGCCCTTTGCGAGA
AGTACCCGGCTAGGTTCATCGTCAACGTCGACGAGTCAGGCCTCCAGTGG
AAGCTCATGCCCAGGCGCACGTACCTTTCCACCTCGGAGGATCGGAAGAC
GGCGCGGGGCTCAAAGAGCATGAACTTCAAGGACGGACTGTCTGCCATCA
TGTGCTGCAATGCCGACGGCACTGCGAAGGTTTACATGGCCATCATGGGG
AGGGCAAAGGAACCCCGCTGCTTCAAGAACGGGGGTTCACCTCTGAAGTA
CTTCTCGCAGACCAACGCGTGGTCCGACTCCGCGACGTTCCTCAAGTGGT
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATGGCCATCATCG
GGAGGGCAAAGGAACCCCGCTGCTTCAAGAACGGGGGTTCACCTCTGAAG
TACTTCTCGCAGACCAACGCGTGGTCCGACTCCGCGACGTTCCTCAAGTG
GTGGCTTGAAGTCGTCCTCCCGTTCGTACGGCGCTTCACTCACGAACCTG
TGCTGCTGCTGATGGACGGCTGTTCGTCNAGTGGTGGCTTGAAGTCTTCC
TCCCGTTCGTTCGGCGCTTCACTCACGAACCTGTGCTGCTGCTGATGGAC
GGCTGTTCGTCTCACAGTGATCTAGTGGATGATCGCGGGCAAGTTACCGT
CAAGACCTACCCTCCGCTGTGCACCGCCGTACACCAACCCATGGATTTGG
GGGTCATCGCCAAGACGAAGGTCAACTACAGGAAGGAGCTGCTCGATGTG
AAGACATCAACCATGTTGGTGGCTGACACACTTCGCGCCCAGGCCAAAGC
CCGCAAGATGATTGTCGGGACAATGGGGCTAGCGCAAGGGCACCAACCTC
ACGTGCGGGACGCCGCTGAACTTCTCCAGAAAGCATGGGCCAGCGTCACC
GCCCAAGACATCGCCAGGTGAGGTTTGAACATGTGATATCGCTGTTGTAA
ATGTGTAGCTCGCGCAAGTGCGCATGGCTTTGGTGGTACTTTACGTGGGA
NAGGGCACCAACCTCACGTGCGGGACGCCGCTGAACTTCTCCAGAAAGCA
TGGGCCAGCGTCACCGCCTAAGACATCGCCAGGTGAGGTTTGAACATGTG
ATATCGCTGTTGTAAATGTGTAGCTCGCGCAAGTGCGCATGGCTTTGGTG
GTACTTTACGTGGGAAAGGTTNGGCCAGCGTCACCGCCCAAGACATCGCC
AGGTGAGGTTTGAACATGTGATATCGCTGTTTTAAATGTGTAGCTCGCGC
AAGTGCGCATGGCTTTGGTGGTACGTTACGTGGGTAAGGTTGTACGGATA
GGTTTTATTTTTCGACTGAATATTCCCGCAACCGCAAATCTCCTTGGTTC
TTTGCTAAAAAAAGGCCCTCTCTCGCATCCCTATGAGTCATTGTTTGTCA
CTGGATTCGTCTTACATCGCTTCTCCACCCAAACACGGATGCATCACAAT
TTCTGCGCTACCTGGCCAGGTGCTTTGTCAAAGCCGAGTCGCTTCCGGAG
GAGATGGCGGCTGAGCTCACCAAGCAACACGGAAAGACCCGGTTCAACGT
CGCCGAGCCTGACCTGAAGGCTCTCGCAGAGACTGTCAACACGTTGAGCA
CGAGCGTGCAGGACGCGCAGAAGCAGGGATCCCGCGTCGTGGACGAGGAG
ATCAGCGAACTGTTGGCAGAACTCAACATCGAACCCGGAAAGCCGGTCGC
GGGGGAAGCGGTGGCCGCAATTCAGCGGTGGGCTACCATCGAGGACGACG
AGGAGGTGGTAGAGGCTCTTCGATTGGACGCGGTGGAAGACATGACAGCA
CTGCTGGCTGGAACGAACTTGTCTACCGGCGGCGACGACGAGGAGGACGA
ACAGGACCAGGGCGGCGGCGGTGAGAACACGGGGCGCGAGCGCCGTGCCC
CACGTGCGCCACCGGGTTATGAAGAACTGTCGTCTCACTTCGGCGCCCTG
GAAGTGGCAGCAGAGGACAGTGGCAACGGAGACGCGGCGTTCTACCTAAC
GAAAGCGAAGATGTCGATGATCGCAGCGCATTCCGCTAGGCGGGTGCGCC
AGACAGACATTAGAGGATTTGTCTAGAGGATTTGTCGCGACGTAGAGTTC
ATGATTGTTTCTTTTTCTTGCGGTTCGCTTCCTGTCGTGTACTTGTAGTT
TTTTTTTTTTTTCTTGCAACATCGAAGCGGGTACGCCAGGCAGACACTCC
AGTGTCGCGACGTAGTTTGGGGGGGAGATACAACTGTAGTGCAGTAGTAT
TGATTTTTGTTTTCTTGCAGTGCGCTTCCTGTCGTGTTTCTTTTTCTGTT
TTGTCTTTTGTATCTTGCAACATCGAAGGAGGGGCTCTAGGGCTGAGATA
TAGCTGCGTCCACTCTGTACGAACGGGAGCTTTAC
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Coding sequence (CDS) from alignment at Scaffold_26:281880..285514-

>EsuBft1094_6a-0001 ID=EsuBft1094_6a-0001|Name=EsuBft1094_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1962bp|location=Sequence derived from alignment at Scaffold_26:281880..285514- (Ectocarpus subulatus male Bft15b)
ATGCCTTGTGCGGAAGGTGAACTGTGCCTTCAACAAGACAGGACACCGCA
ACCCCCTCATGGCCACCCCTGCAAGGGAGGATGTGGCGGGCGGCTCCACG
GCAATTGCGGCAGCGGGTTTGAGGACAACGAGCAGCACCGCATCTGCACC
ACGTGTGTCGCCAGGACTAGCAAGCGCAAAGCGACACCAGCTAAGGGTGC
TGGGGCGGGACCATCTAAACGCCAGAAGCAGACGAGCGGGGGATGCAAGA
AGGGAACGGGTTTTCGTGCGCGGCTGGACAACAACAAGAAGCTCGAGATT
CTGAAGATGCTGGATCAGAAGGTGTCTCACGCACAGATTGCAGACCGCTT
CAAGTGCTTGCTTCGGTTTATTGGGACCGTGAAGGCTGGCCGGCAGAAGG
TGGAGACAGCAACTGCTGCAGGCTGCAGCAGCCAGAAAACTGCACGCAAA
GGAGATTTTCCGGAGGTGGATGAGATAGCTCTTGATCTACTCGACAAAGC
CCGGAAGGCCAAGATGCCCGTCACACGCGATGTCCTTCGAAGCTTCGGCC
GGTCTACCAGGGCAACCCTGCTGGCTGACACCGCAACTTCTGCAGCAGTG
AGGGAGAGGGTGGAGGACTTCAAGGCCGGCAAGAGGTGGGCGAAGAACTT
CGTGAAGCGCAACAAGATCCAGAGCGTGAGACTTCATGGCGAGGCTGGTA
GCGTCGACAAGGAGGCCATCAAGGAGGGCATGGAGGAAATCAGGGCCCTT
TGCGAGAAGTACCCGGCTAGGTTCATCGTCAACGTCGACGAGTCAGGCCT
CCAGTGGAAGCTCATGCCCAGGCGCACGTACCTTTCCACCTCGGAGGATC
GGAAGACGGCGCGGGGCTCAAAGAGCATGAACTTCAAGGACGGACTGTCT
GCCATCATGTGCTGCAATGCCGACGGCACTGCGAAGGTTTACATGGCCAT
CATGGGGAGGGCAAAGGAACCCCGCTGCTTCAAGAACGGGGGTTCACCTC
TGAAGTACTTCTCGCAGACCAACGCGTGGTCCGACTCCGCGACGTTCCTC
AAGTGTGATCTAGTGGATGATCGCGGGCAAGTTACCGTCAAGACCTACCC
TCCGCTGTGCACCGCCGTACACCAACCCATGGATTTGGGGGTCATCGCCA
AGACGAAGGTCAACTACAGGAAGGAGCTGCTCGATGTGAAGACATCAACC
ATGTTGGTGGCTGACACACTTCGCGCCCAGGCCAAAGCCCGCAAGATGAT
TGTCGGGACAATGGGGCTAGCGCAAGGGCACCAACCTCACGTGCGGGACG
CCGCTGAACTTCTCCAGAAAGCATGGGCCAGCGTCACCGCCCAAGACATC
GCCAGGTGCTTTGTCAAAGCCGAGTCGCTTCCGGAGGAGATGGCGGCTGA
GCTCACCAAGCAACACGGAAAGACCCGGTTCAACGTCGCCGAGCCTGACC
TGAAGGCTCTCGCAGAGACTGTCAACACGTTGAGCACGAGCGTGCAGGAC
GCGCAGAAGCAGGGATCCCGCGTCGTGGACGAGGAGATCAGCGAACTGTT
GGCAGAACTCAACATCGAACCCGGAAAGCCGGTCGCGGGGGAAGCGGTGG
CCGCAATTCAGCGGTGGGCTACCATCGAGGACGACGAGGAGGTGGTAGAG
GCTCTTCGATTGGACGCGGTGGAAGACATGACAGCACTGCTGGCTGGAAC
GAACTTGTCTACCGGCGGCGACGACGAGGAGGACGAACAGGACCAGGGCG
GCGGCGGTGAGAACACGGGGCGCGAGCGCCGTGCCCCACGTGCGCCACCG
GGTTATGAAGAACTGTCGTCTCACTTCGGCGCCCTGGAAGTGGCAGCAGA
GGACAGTGGCAACGGAGACGCGGCGTTCTACCTAACGAAAGCGAAGATGT
CGATGATCGCAGCGCATTCCGCTAGGCGGGTGCGCCAGACAGACATTAGA
GGATTTGTCTAG
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