EsuBft1094_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1094_4a-0001
Unique NameEsuBft1094_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_26contigScaffold_26:272434..275408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1094_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length64
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_4aEsuBft1094_4aEctocarpus subulatus male Bft15bgeneScaffold_26 272434..275408 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_4a-0001EsuBft1094_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_26 272454..275092 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_4a-0001-exonagat-exon-88946Ectocarpus subulatus male Bft15bexonScaffold_26 272434..272476 +
EsuBft1094_4a-0001-exonagat-exon-88945Ectocarpus subulatus male Bft15bexonScaffold_26 274335..274351 +
EsuBft1094_4a-0001-exonEsuBft1094_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_26 274821..275408 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_4a-0001-exonagat-five_prime_utr-573Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_26 272434..272453 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_4a-0001-cdsEsuBft1094_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_26 272454..272476 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_4a-0001-exonagat-three_prime_utr-912Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_26 275093..275408 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1094_4a-0001 ID=EsuBft1094_4a-0001|Name=EsuBft1094_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=648bp|location=Sequence derived from alignment at Scaffold_26:272434..275408+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ACGACCCCAACGGCATCTTCATGCTACGCGTGCTTTCGTCACAGGGATCA
NGTGATGCCGGACGGCCGGAATGCCTTTGCTCGTGGATCTTGCGGGTACC
TTTCCATGATAAGCTCTTTGAAAGTGACCGTGATCCACCTTGTCGAGGCC
CGCAGCTTCCTCTTGCGTCGTGCCAGCAACATCTTGTACAGCTCCTTCTC
CGCGTCAGGGAACCACAGCCACCGTCGAGTGCATGTCGCCATCAGACTAC
TCCGCACCTTGTCAGCTGCCTGCTGCACGAGAGAGTCTTCGTCCTTCTGC
CATTTGCTGATATTGCTGGCCGAGATCCCTGACTTATGTTCCAAGTAAAA
GGGAGAGGTCATAGCGAAGTGCGCACGAACCTCCGTTGACCGCGACTCTA
GATCTCACAGCTTCTGAATAACACCGACCTTCTCGCGCGAGGTGTACCGT
CTCCTCGAGGCTGCTCCACACGTTTTCTTTGGTGGCGACTCCGTTTGTGA
AAAGCCGTCGTTCACGAGGTTGTTGTTCCGCTCGGCTCCAGGGCGTAAAG
GCTGCAGCACAAACGTCACGGACCCTGGCGGACATGTCGCGCCGCATCCG
CGACTCTCTCCATGGTGAAACGCAACGTGCCAGCAACGTCCTGACGGT
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protein sequence of EsuBft1094_4a-0001

>EsuBft1094_4 ID=EsuBft1094_4|Name=EsuBft1094_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=103bp
MLRVLSSQGSXDAGRPECLCSWILRVPFHDKLFESDRDPPCRGPQLPLAS
CQQHLVQLLLRVREPQPPSSACRHQTTPHLVSCLLHERVFVLLPFADIAG
RDP
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mRNA from alignment at Scaffold_26:272434..275408+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1094_4a-0001 ID=EsuBft1094_4a-0001|Name=EsuBft1094_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2975bp|location=Sequence derived from alignment at Scaffold_26:272434..275408+ (Ectocarpus subulatus male Bft15b)
ACGACCCCAACGGCATCTTCATGCTACGCGTGCTTTCGTCACAGTGCAGG
GTGACGCGGTAGTCGTACTCCTGCCGCGAAGCCGGGTGAGATCTGCGACT
AATTACCCCTCCGAACCAACCCAACCCGAGTTTCACGAGAACCCCACGCT
TCACTATCGACTGATCGAGGGCCGCTGGTGGAGACGCCTGGAGTCGAAAC
CCGTCCGGGATGTCCATCTTCAGCGTTTCTCCTCAGGCGACAATTCGTCA
TCGTCGTCGAGCTGGGTCAGCGGGTCTTCATCGTTGTCATCGTCTCCTGA
CAAGGCACAGCGGAGGCATCGTCTATTGTTGTGGCGATTCCCGAAGCGGG
GACAATATTCCAACACTCATTAATGTGTCAACAAGAGGAGCTTTCTTCCG
CAAGGGTAATTCTTCTGTGCTCCGAATGAACGCGAAGTACAATATCACTT
ACCGTCGCATTCATCATCGCTGGAAGAGGCGTCTTCCGACAGCTGGTCCA
CGTCAACCTTGCCGGTGTCCTCATCCTCCTTTCCCCAGCGCCACCCTCCA
CATCCATTAGGAATATGTGGAAAGGCCCTCGAGGTTGATTTTGTCGTCCC
CAGAGCCATCCGCCGTCATTCCACATCCGGTTTTCTCGAAGAGACTAAAC
CGATATTGCTCATCTTTATCGATCTCCTCGGTCGCCTGTGCCACCCANTC
ATCCTCCTTTCCCCAGCGCCACCCTCCACATCCATTAGGAATATGTGGAA
AGGCCCTCGAGGTTGATTTTGTCGTCCCCAGAGCCATCCGCCGTCATTCC
ACATCCGGTTTTCTCGAAGAGACTAAACCGATATTGCTCATCTTTATCGA
TCTCCTCGGTCGCCTGTGCCACCCAATTGGTGAGCAACACGCGACGTTCG
GAACACGTCAGTGCTTTGGCCTCCCACTTTTGCAGGTTGTCTCCGCTCTC
CAGCCACTTGTCCAGCTGCACCCCCACAGCCACCTTCAGCCGCCGTCCAT
AGCCGGCGTCGATCGGCTGGACCTCGTCCGTACAGCCTGCCGGCAGGTGC
CAAAGAAGCGTGTTGCACTCCTTGTGGAGATACTTGCGGAATTCCTCAGT
CGTCTGCCCGTGCAGGTTGTCGGCGAGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTCCAGCTGCAC
CCCCATAGCCACCTTCAGCCGCCGTCCATAGCCGGCGTCGATCGGCTGGA
CCTCGTCCGTACAGCCTGCCGGCAGGTGCCAAAGAAGCGTGTTGTACTCC
TTGTGGATATACTTGCGGAATTCCTCAGTCGTCTGCCCGTGCAGGTTGTC
GGCGAGGAGAAGCGACTGCTCCTCGGGCACCTTCCCGTCTACCATTCGGC
TCGGGCGAAAAGAGCGCTCCAGCCATTGCATGCAGAAGTCGCTGTCGGCC
CAGGCCTTGTGCTGGAAGAAGATATCTACGCGCTTGTCGTATGCTGCCTT
CTCCACCTTGGTGATGCCGGTTCCTTTGCNCCTCGGGCACCTTCCCGTCT
ACCATTCGGCTCGGGTGAAAAGAGCGCTCCAGCCATTGCATGCAGAAGTC
GCTGTCGGCCCAGGCCTTTAGCTGGAAGAAGACATCTACGCGCTTGTCGT
ATGCTGCCTTCTCCACCTTGGTGATGCCGGTTCCTTTGCCGCGGAAGATG
ATCCCGCCTGCTCCTATCGTCGGTTGCACCGTGCACTGCCGCTTCTCCAA
GCCGGGGAATGGCTGGCCAACATGCACCCGCTTCGCCCCTCTTTTGTCCC
AGGTGTCTTCCTGTCCGGTCACGAACCCCAACGGTACCTGGTCGGTGTTG
TCCCTCAGCTCCTTCACGAAGCGCCCCCACTTGCCGTAGGGTCCTTCGTA
GGGGATCANGTGATGCCGGTTCCTTTGCCGCGGAAGATGATCACGCACCT
CGTCTTTGTCCCGCCTGCTCCTATCGTCGGTTGCACCGTGCACTGCCGCT
TCTGCAAGCCGGGGAATGGCTGGCCAACATGCACACGTTTCGCCCCTCTT
TTGTCCCGGGTGTCTTCTTGTCCGGTCACGAACCCCAACGGTACCTGGTC
GGTGTTGTCCCTCAGCTCCTTCACGAAGCGCCCCCACTTGCCGTAGGGTC
CTTCGTAGGGGATCAGCGCCCCTGGTTGCTCGACGGATCCTCCGTCCGAG
ACAGGTGCTTGTGGCTCCCACGGGATCACCTTCCCTCCATGTACACGAGG
CTGTTGCAGGAGCTTGCGGAACTCCCTGCCATCTCTGGATCTTCGGTAGT
CTCTCCTCCACAGACTTGTTCTTGGAGTTAGATCGCCGCCGCTTAGACAG
CGAGGGCCTCGTCGCCCACTTTTGCGCGAACCGGAAGGACGGCCGGAATG
CCTTTGCTCGTGGATCTTGCGGGTACCTTTCCATGATAAGCTCTTTGAAA
GTGACCGTGATCCACCTTGTCGAGGCCCGCAGCTTCCTCTTGCGTCGTGC
CAGCAACATCTTGTACAGCTCCTTCTCCGCGTCAGGGAACCACAGCCACC
GTCGAGTGCATGTCGCCATCAGACTACTCCGCACCTTGTCAGCTGCCTGC
TGCACGAGAGAGTCTTCGTCCTTCTGCCATTTGCTGATATTGCTGGCCGA
GATCCCTGACTTATGTTCCAAGTAAAAGGGAGAGGTCATAGCGAAGTGCG
CACGAACCTCCGTTGACCGCGACTCTAGATCTCACAGCTTCTGAATAACA
CCGACCTTCTCGCGCGAGGTGTACCGTCTCCTCGAGGCTGCTCCACACGT
TTTCTTTGGTGGCGACTCCGTTTGTGAAAAGCCGTCGTTCACGAGGTTGT
TGTTCCGCTCGGCTCCAGGGCGTAAAGGCTGCAGCACAAACGTCACGGAC
CCTGGCGGACATGTCGCGCCGCATCCGCGACTCTCTCCATGGTGAAACGC
AACGTGCCAGCAACGTCCTGACGGT
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Coding sequence (CDS) from alignment at Scaffold_26:272434..275408+

>EsuBft1094_4a-0001 ID=EsuBft1094_4a-0001|Name=EsuBft1094_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=312bp|location=Sequence derived from alignment at Scaffold_26:272434..275408+ (Ectocarpus subulatus male Bft15b)
ATGCTACGCGTGCTTTCGTCACAGGGATCANGTGATGCCGGACGGCCGGA
ATGCCTTTGCTCGTGGATCTTGCGGGTACCTTTCCATGATAAGCTCTTTG
AAAGTGACCGTGATCCACCTTGTCGAGGCCCGCAGCTTCCTCTTGCGTCG
TGCCAGCAACATCTTGTACAGCTCCTTCTCCGCGTCAGGGAACCACAGCC
ACCGTCGAGTGCATGTCGCCATCAGACTACTCCGCACCTTGTCAGCTGCC
TGCTGCACGAGAGAGTCTTCGTCCTTCTGCCATTTGCTGATATTGCTGGC
CGAGATCCCTGA
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