EsuBft1094_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1094_2a-0001
Unique Name	EsuBft1094_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_26	contig	Scaffold_26:261339..262911 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1094_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	90
Hectar predicted targeting category	other localisation
Date last modified	2016-06-15
Date creation	2016-06-15

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1094_2a	EsuBft1094_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_26 261339..262911 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1094_2a-0001	EsuBft1094_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_26 261427..261849 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1094_2a-0001-exon	agat-exon-88939	Ectocarpus subulatus male Bft15b	exon	Scaffold_26 261339..261919 +
EsuBft1094_2a-0001-exon	EsuBft1094_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_26 262593..262911 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1094_2a-0001-exon	agat-five_prime_utr-571	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_26 261339..261426 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1094_2a-0001-cds	EsuBft1094_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_26 261427..261849 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1094_2a-0001-exon	agat-three_prime_utr-909	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_26 261850..261919 +
EsuBft1094_2a-0001-exon	agat-three_prime_utr-910	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_26 262593..262911 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_26:261339..262911+
coding sequence from alignment at Scaffold_26:261339..262911+

spliced messenger RNA

>EsuBft1094_2a-0001 ID=EsuBft1094_2a-0001|Name=EsuBft1094_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=900bp|location=Sequence derived from alignment at Scaffold_26:261339..262911+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGCCGGTGTCGTCATCGTCGAACCGGGATCGTCCGGGTCTTCCTCTTCCT
CGTCCGTTCTAGCGTTCCGGGACGTCAGAAGAGCCGTCATGGCGCTGGCA
ACGACTGCGGAGTGTGCAGCACCGGCAGGACCAGAGTACGTGGCCTGGCC
GGTCGGTGCACCGGGTACAGGCTTGCGAGCCAAATGGCAACGGCCCCTGC
AGCCGCAAGCGAGGAAGCACTTGCGCCCTTTGCACCCGCACCCCCTAGAG
TTATGCTGTAAGGCCTTCACCGGGTCGCAACCGCACATCATCGTGACCAT
CTTCCCATCGGGACCGAAGCAAGAATGCTCCGACATCCACATAACGCAAT
TCTCTCCTGTGAGTGCTGACGCGTTGCTGCCCTTCGCCTTGGGGTTGATA
CCCCAACCCTTTCCGTTGAAGTCTCGTTCTGGCATGTGGTCTTTGAATCC
ATCTTGCCAGTACCCGTCGACAGACTTCATCCTCAGGCATTGCTCGCGCA
TCGACCTATAAGTCGGGCAGGTGTCTGTCGTCCTCTTCTTGCCAAGCTTG
AAGATGGCCACTCGGATGAGGTCCACGTACCGTCCTGACGCTGTCATTCA
CGCTGCGGAGCAGATCGCCTGGAGGGGTCGTAACACCGGCAAATGCTGCC
TCGTACCTGAAGTAGAAAATGGTCGCGAGAAGCTTGATGCTCTGCTCTAT
GTCCACGGTCCACACCCCATCCTCCATCACGAATAGGGAACGGTTGAACA
CGCCCTCAGCCCGCACGCTTTTCAGAGCAAGTATCCACATTTTGTATAAC
GGCAGGCCGGAAATGGCAGGGAGGAAGTCGCAGCCCGCCAGAAGGTAGAT
CAGAACGAAAAGGCGGACCTTCTCGTCAGCGGTGGGAATCCAGCCTTGGA

protein sequence of EsuBft1094_2a-0001

>EsuBft1094_2 ID=EsuBft1094_2|Name=EsuBft1094_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=140bp
MALATTAECAAPAGPEYVAWPVGAPGTGLRAKWQRPLQPQARKHLRPLHP
HPLELCCKAFTGSQPHIIVTIFPSGPKQECSDIHITQFSPVSADALLPFA
LGLIPQPFPLKSRSGMWSLNPSCQYPSTDFILRHCSRIDL

mRNA from alignment at Scaffold_26:261339..262911+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1094_2a-0001 ID=EsuBft1094_2a-0001|Name=EsuBft1094_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1573bp|location=Sequence derived from alignment at Scaffold_26:261339..262911+ (Ectocarpus subulatus male Bft15b)
GGCCGGTGTCGTCATCGTCGAACCGGGATCGTCCGGGTCTTCCTCTTCCT
CGTCCGTTCTAGCGTTCCGGGACGTCAGAAGAGCCGTCATGGCGCTGGCA
ACGACTGCGGAGTGTGCAGCACCGGCAGGACCAGAGTACGTGGCCTGGCC
GGTCGGTGCACCGGGTACAGGCTTGCGAGCCAAATGGCAACGGCCCCTGC
AGCCGCAAGCGAGGAAGCACTTGCGCCCTTTGCACCCGCACCCCCTAGAG
TTATGCTGTAAGGCCTTCACCGGGTCGCAACCGCACATCATCGTGACCAT
CTTCCCATCGGGACCGAAGCAAGAATGCTCCGACATCCACATAACGCAAT
TCTCTCCTGTGAGTGCTGACGCGTTGCTGCCCTTCGCCTTGGGGTTGATA
CCCCAACCCTTTCCGTTGAAGTCTCGTTCTGGCATGTGGTCTTTGAATCC
ATCTTGCCAGTACCCGTCGACAGACTTCATCCTCAGGCATTGCTCGCGCA
TCGACCTATAAGTCGGGCAGGTGTCTGTCGTCCTCTTCTTGCCAAGCTTG
AAGATGGCCACTCGGATGAGGTCCACGTACCGTATTCTACACAAGATACC
ACACCCTCATAAGATACCACACCCCCCCCACAATACCACACCCCGGTGGT
AATTTTGGGTGTATTTTTCAGACCATGATTTATCACCGGGGGTACACAAG
ATACCACACCCCGGTGATAACACAGGTTACGCCGCATACATTCCCTGTCT
CTATCACCGGGGGTGAAACAGCATCACACACGCACAGCTTGTACCGTACG
GGGGGAGACATGGAGACCTCAGAGAACATGAACGTGCGGGAAGAGCAGAA
TGCCGCCGCAAGTACATCTGCTTCTCCCACGACTGCTTCGACCGCAGCAG
CACAGGCGCCACAGATCACCTCGTTCTTTCAACCCGAGCAGACTTCTACG
CAAGCGGCACACCCCCTGTTTATCACACACCCGAACACACTCTTTGGGTG
TTCCGACGTGTTATCACACCCCATTTTATCACACCCCCTTTTTTATCCCA
CTCCCAAACCCTCCCTGTGGGTGGTCGCATGTGCTACCACACCCCCTGGT
TTATCACACCCCCTGAGGAGCTCCTGCGAGCTAGGCTTTATCACCGGGGT
ACACAAGATACCACACCCCCCCCACACTACCACACCCGGTGATAATATTT
TTGAAGCCCAAAATGTTATCACCGGGGTGTGGTATCTTGTGCAGAATACG
GCAGGTCCTGACGCTGTCATTCACGCTGCGGAGCAGATCGCCTGGAGGGG
TCGTAACACCGGCAAATGCTGCCTCGTACCTGAAGTAGAAAATGGTCGCG
AGAAGCTTGATGCTCTGCTCTATGTCCACGGTCCACACCCCATCCTCCAT
CACGAATAGGGAACGGTTGAACACGCCCTCAGCCCGCACGCTTTTCAGAG
CAAGTATCCACATTTTGTATAACGGCAGGCCGGAAATGGCAGGGAGGAAG
TCGCAGCCCGCCAGAAGGTAGATCAGAACGAAAAGGCGGACCTTCTCGTC
AGCGGTGGGAATCCAGCCTTGGA

Coding sequence (CDS) from alignment at Scaffold_26:261339..262911+

>EsuBft1094_2a-0001 ID=EsuBft1094_2a-0001|Name=EsuBft1094_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=423bp|location=Sequence derived from alignment at Scaffold_26:261339..262911+ (Ectocarpus subulatus male Bft15b)
ATGGCGCTGGCAACGACTGCGGAGTGTGCAGCACCGGCAGGACCAGAGTA
CGTGGCCTGGCCGGTCGGTGCACCGGGTACAGGCTTGCGAGCCAAATGGC
AACGGCCCCTGCAGCCGCAAGCGAGGAAGCACTTGCGCCCTTTGCACCCG
CACCCCCTAGAGTTATGCTGTAAGGCCTTCACCGGGTCGCAACCGCACAT
CATCGTGACCATCTTCCCATCGGGACCGAAGCAAGAATGCTCCGACATCC
ACATAACGCAATTCTCTCCTGTGAGTGCTGACGCGTTGCTGCCCTTCGCC
TTGGGGTTGATACCCCAACCCTTTCCGTTGAAGTCTCGTTCTGGCATGTG
GTCTTTGAATCCATCTTGCCAGTACCCGTCGACAGACTTCATCCTCAGGC
ATTGCTCGCGCATCGACCTATAA