EsuBft1094_19a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1094_19a-0001
Unique NameEsuBft1094_19a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_26contigScaffold_26:397190..397838 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1094_19
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length64
Hectar predicted targeting categoryother localisation
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_19aEsuBft1094_19aEctocarpus subulatus male Bft15bgeneScaffold_26 397190..397838 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_19a-0001-exonEsuBft1094_19a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_26 397190..397838 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_19a-0001-exonagat-three_prime_utr-906Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_26 397190..397209 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_19a-0001-cdsEsuBft1094_19a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_26 397210..397812 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_19a-0001-exonagat-five_prime_utr-568Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_26 397813..397838 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_19a-0001EsuBft1094_19Ectocarpus subulatus male Bft15bpolypeptideScaffold_26 397210..397812 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1094_19a-0001 ID=EsuBft1094_19a-0001|Name=EsuBft1094_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=649bp|location=Sequence derived from alignment at Scaffold_26:397190..397838- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGACGGCAGCAGCAGCAATAGCAGCGATGACGACGAAGCCTCTCGCGGGG
GTGACAGAAGAAGCAGAGGGCCATGCACCGAAGCTCGCAGCGGCAACAGA
AGCACCGAGCACGGTTCCCGACACAAAGAACGCGGGCAAGACAAGCACGA
GCCGCGAAGATCGAGGGCCAACTCCACCGACGAATGGCACTCTCGGACAG
GAACCCGCCGCTCCAGATCCCCTGCTGGTGGCCGACGAAAGGGGCCAGGA
GGAGACGGCCGTCGTTACCGCCGCCGCCAGACAGACCACGACGACACTAG
CGAAGACGAAGATGAGCGAAGTGATCTCGGAAGAACACGCGGCGGGCGGG
ATCGAGGCACTGGCGCGGACAGGGACGGTCGCGAGTCCAACAAGCACAGC
GGTAGCGGCGACGGAGGGAACGGCCGCCGGAGAGATGGTTCCAGGGATCG
CCGCGAGAGTCAAAGGTCGGGCAACGGTCGGCGAGATGCTGGAGCCATGG
ACGAGGAAAACTACCGTGCCCGTGGTCACAGGGCCAGTGTCTCCTCTGAC
GGCGGGCGCGGCGATCGCAGAGAACGGTCCCGTGATCGGCCTCGAAGCGG
TCACGGCGATGATGGCAGGCAAGGCCTGACGAATTCCGCCGCCGATAGG
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protein sequence of EsuBft1094_19a-0001

>EsuBft1094_19 ID=EsuBft1094_19|Name=EsuBft1094_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=200bp
MTTKPLAGVTEEAEGHAPKLAAATEAPSTVPDTKNAGKTSTSREDRGPTP
PTNGTLGQEPAAPDPLLVADERGQEETAVVTAAARQTTTTLAKTKMSEVI
SEEHAAGGIEALARTGTVASPTSTAVAATEGTAAGEMVPGIAARVKGRAT
VGEMLEPWTRKTTVPVVTGPVSPLTAGAAIAENGPVIGLEAVTAMMAGKA
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mRNA from alignment at Scaffold_26:397190..397838-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1094_19a-0001 ID=EsuBft1094_19a-0001|Name=EsuBft1094_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=649bp|location=Sequence derived from alignment at Scaffold_26:397190..397838- (Ectocarpus subulatus male Bft15b)
CGACGGCAGCAGCAGCAATAGCAGCGATGACGACGAAGCCTCTCGCGGGG
GTGACAGAAGAAGCAGAGGGCCATGCACCGAAGCTCGCAGCGGCAACAGA
AGCACCGAGCACGGTTCCCGACACAAAGAACGCGGGCAAGACAAGCACGA
GCCGCGAAGATCGAGGGCCAACTCCACCGACGAATGGCACTCTCGGACAG
GAACCCGCCGCTCCAGATCCCCTGCTGGTGGCCGACGAAAGGGGCCAGGA
GGAGACGGCCGTCGTTACCGCCGCCGCCAGACAGACCACGACGACACTAG
CGAAGACGAAGATGAGCGAAGTGATCTCGGAAGAACACGCGGCGGGCGGG
ATCGAGGCACTGGCGCGGACAGGGACGGTCGCGAGTCCAACAAGCACAGC
GGTAGCGGCGACGGAGGGAACGGCCGCCGGAGAGATGGTTCCAGGGATCG
CCGCGAGAGTCAAAGGTCGGGCAACGGTCGGCGAGATGCTGGAGCCATGG
ACGAGGAAAACTACCGTGCCCGTGGTCACAGGGCCAGTGTCTCCTCTGAC
GGCGGGCGCGGCGATCGCAGAGAACGGTCCCGTGATCGGCCTCGAAGCGG
TCACGGCGATGATGGCAGGCAAGGCCTGACGAATTCCGCCGCCGATAGG
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Coding sequence (CDS) from alignment at Scaffold_26:397190..397838-

>EsuBft1094_19a-0001 ID=EsuBft1094_19a-0001|Name=EsuBft1094_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=603bp|location=Sequence derived from alignment at Scaffold_26:397190..397838- (Ectocarpus subulatus male Bft15b)
ATGACGACGAAGCCTCTCGCGGGGGTGACAGAAGAAGCAGAGGGCCATGC
ACCGAAGCTCGCAGCGGCAACAGAAGCACCGAGCACGGTTCCCGACACAA
AGAACGCGGGCAAGACAAGCACGAGCCGCGAAGATCGAGGGCCAACTCCA
CCGACGAATGGCACTCTCGGACAGGAACCCGCCGCTCCAGATCCCCTGCT
GGTGGCCGACGAAAGGGGCCAGGAGGAGACGGCCGTCGTTACCGCCGCCG
CCAGACAGACCACGACGACACTAGCGAAGACGAAGATGAGCGAAGTGATC
TCGGAAGAACACGCGGCGGGCGGGATCGAGGCACTGGCGCGGACAGGGAC
GGTCGCGAGTCCAACAAGCACAGCGGTAGCGGCGACGGAGGGAACGGCCG
CCGGAGAGATGGTTCCAGGGATCGCCGCGAGAGTCAAAGGTCGGGCAACG
GTCGGCGAGATGCTGGAGCCATGGACGAGGAAAACTACCGTGCCCGTGGT
CACAGGGCCAGTGTCTCCTCTGACGGCGGGCGCGGCGATCGCAGAGAACG
GTCCCGTGATCGGCCTCGAAGCGGTCACGGCGATGATGGCAGGCAAGGCC
TGA
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