EsuBft1094_18a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1094_18a-0001
Unique NameEsuBft1094_18a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_26contigScaffold_26:391975..397188 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1094_18
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length256
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSmall acidic protein-like domain
Ec32 orthologEc-02_000580.2
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_18aEsuBft1094_18aEctocarpus subulatus male Bft15bgeneScaffold_26 391975..397188 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_18a-0001EsuBft1094_18Ectocarpus subulatus male Bft15bpolypeptideScaffold_26 396760..397164 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_18a-0001-exonagat-exon-89002Ectocarpus subulatus male Bft15bexonScaffold_26 391975..393322 -
EsuBft1094_18a-0001-exonagat-exon-89001Ectocarpus subulatus male Bft15bexonScaffold_26 393884..394111 -
EsuBft1094_18a-0001-exonEsuBft1094_18a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_26 396200..397188 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_18a-0001-exonagat-three_prime_utr-903Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_26 391975..393322 -
EsuBft1094_18a-0001-exonagat-three_prime_utr-904Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_26 393884..394111 -
EsuBft1094_18a-0001-exonagat-three_prime_utr-905Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_26 396200..396759 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_18a-0001-cdsEsuBft1094_18a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_26 396760..397164 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_18a-0001-exonagat-five_prime_utr-567Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_26 397165..397188 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1094_18a-0001 ID=EsuBft1094_18a-0001|Name=EsuBft1094_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2565bp|location=Sequence derived from alignment at Scaffold_26:391975..397188- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGTACAGCAACGGAACTGGCCGGGATGGTTCCAGGGAAAGGTCTGGGGGG
TCCAGGCGCGACGGCGGTGGCCGAAGGGACTACGACGGCAGCAGGGACAG
GCAATATGGTTACATTGGGGGGGGCGGCGGGAGACACGGCGTCTACCGGG
ATTCCAGCAGGGGTCGGTACGAACGTGATCGGGGTGGCGGCGCCGACGGT
TCAAGAGGCCGTTACGGAGAGGGTGATGGAGGACGTAGGCCGTGGGCAGG
CGGCGGCGGCGGTGGCTACAGCGACGACAGGGGTCGACGTCGCGAGGATG
ATGATTATAGCACAAGATGGTACGGGCGAAACGGGGATCGCACAGCGGGG
AGGGGTGGAGGTGATTTCCGCGACGACCGAGCAATGGGGAGTTATCGTGC
GCGTGGTGGTGGCCGTGACGCGGCAGTAGCCACATGCAGGCGAGAAGAGT
CCGGCGGGGACAACAACGCTCGCCGTCGCCATGGAGCCGGCAGCGGCGTC
GCACAAGGAGAAGGTGCCTCTAGTAGTCCGGTTGTGGGTTTCGTCGATGG
GCAGTGGGTGTCGGGCGGGATTCTGGGCGATGATGCCGACAGCGACGCCA
GCAAAGACGCCAACCCCGGGGGGAAGCAAGGCAACGCCGACGGCGGACAG
CGCGAGAGCGGTCACGGCAGCAGTAGCGGCAGCCTCGGCAAGCCTGCCGC
GGTGGAAACAGCAGCTACGGCTACGGCTACCATTCCCGGTACAAGCGGTG
ATGTGCCCAGGCGCCCGCGCTGGGACAAGGCGGCCCCTACCGCTACCGCG
GGCCTGAGCGCCGCGATTGCGAAGGCTTCGGGGAGAGCGGTGTCGGGGAA
AAAGAAGCTGGCGTGGGGCGCCGCTGGTGGCGGTGGGAGTGCCGCAAAGA
GACCGCTGTGGGGGAGTACAACAGAGGCTGGAGTCGCGGCGCCGATGGGC
GGTGGGAATGGATCCGGGATCAGCCCCGAACAGGCTCAGGAGGGGGATCA
ACAAGCGGACGGCGTCGAGCAGAGGTGGCAAGAAGCTGCCGCAGCCTTAG
GGCCGGCAGAGCGGCAGGTTAAGTTCCTCCGGCTGCTGGGTGCAAAGAAG
GGAGCGGCGGCGGCGGCGGCGGGTGCCTCGATCGCCTCGAGAGGGGCGGG
AGGCCTGTTTTCTCCTTCTGGTGCCGGTGGGGCCGGAACCGACGACGGCC
TGGCGGCGAACGCGAAGGTGATGCAAGACTTGGAAATACACTACCAGAAG
GCGCATCGAGCACACTTCGGCTTTCAGCGGGGGCTAGGAAAATGATAAAA
CGGCGTAGATGGGGGCGCAACCCCCGCAAGAGAATGCACTCAATGAGGGA
TGAGGGCAGTATCCTCGATAGTGCGGGACCGCACGCTACGTGTTCGAGAC
TATCCGTCACGGAACTCGTAGAAATCATGAGGGGATTGTGATTTTGGGTG
TATGGCGGCGTTATTTTCCGACGCTCTCGATTCCTTTGGACCATCGCAAG
GGGTTAGTATTGTCGCGCATCCTCCCCTAGCGATGATGTTCTTCTAGACA
TGTGAGGACACCTTGCTGAGGTGTGGCCGGCATCGAACCCTAACGATGAT
GTTCTTTGGAACCGCCTCGACGATTGAGAAGGTGCAGGGCGGATTCTTGG
CTTGTTTGTGTCTTGTGGGCCACGCCGCTTTGTTGTTTCTGACGACCAGT
CATCCCCCGTTGTCAACTGGGGCAGTGCTATAACGGCCGTGAATTGACGT
CCACGCAGAAAGAAAAACGGCACGTGAGGTAGAGGTGTTGGATAAACATA
CGATGCCGATAAAAGAGGCACTCACGGCTCCTCTAGAAAACTGGTAGTTG
GGGTGCAGGTGGTTGTGATCTGCTGCGTTGGTACAGCAGCAGGAAAGTCC
TTGTAGTGTTCGATGGATTGATGGACAAGTTGAGTAGGGAAGGATTGTTG
GAAGTGTTTTTTTTTATGGGAACAGGAACACGGGTAGGTTGGGGGTGTTC
GTTGTCCGAGTGATGTGGTGAGTTCAAGAGGGGATAGCGGCATACGTAAT
GGTCAATCCAGGCATTCATATCTAGAAGAGTCCACGATGTAGTCATGGGG
TCGAAGTGGGTTTGTTTTTCTTCGCGGCAGTGCCGTTTCCTCCAGAGGTG
GCGTTCTGAAAGGATGCTCGTGTTTTCACATATGCATATGATAAAAGTGC
CCCGGGCAAACCTCGAGACGCATACGGAGAATGTTAACCATCACACCCGC
CTGTAGCTCTCCCGACGACGGGACTGTTGATGTCGGGAAGTATGCATATG
TATCTGCAAGCTGCGTGCTTTAGTCGAAGGAATGGCTTGCCAAGTCTCGG
TTGGTACTGAATATTCTTGGGGAACATGCTTCTACAAGCAGTAGTCCGAC
GAACGACACCATGCCTGTACAACGCATGGACACCTAAAAACGCTGTGGTG
TGCACCACGGCTGTCTCAATCTCTTCACGACTTCGTAGCTACGCCACAGA
CCGCACGTGTTGCCACTACCAATAGCATCCCCCCTCTGCGGGCGCCCGCT
AGTAGCAGCGGAAGC
back to top

protein sequence of EsuBft1094_18a-0001

>EsuBft1094_18 ID=EsuBft1094_18|Name=EsuBft1094_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=134bp
MVPGKGLGGPGATAVAEGTTTAAGTGNMVTLGGAAGDTASTGIPAGVGTN
VIGVAAPTVQEAVTERVMEDVGRGQAAAAVATATTGVDVARMMIIAQDGT
GETGIAQRGGVEVISATTEQWGVIVRVVVAVTRQ
back to top

mRNA from alignment at Scaffold_26:391975..397188-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1094_18a-0001 ID=EsuBft1094_18a-0001|Name=EsuBft1094_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5214bp|location=Sequence derived from alignment at Scaffold_26:391975..397188- (Ectocarpus subulatus male Bft15b)
GGTACAGCAACGGAACTGGCCGGGATGGTTCCAGGGAAAGGTCTGGGGGG
TCCAGGCGCGACGGCGGTGGCCGAAGGGACTACGACGGCAGCAGGGACAG
GCAATATGGTTACATTGGGGGGGGCGGCGGGAGACACGGCGTCTACCGGG
ATTCCAGCAGGGGTCGGTACGAACGTGATCGGGGTGGCGGCGCCGACGGT
TCAAGAGGCCGTTACGGAGAGGGTGATGGAGGACGTAGGCCGTGGGCAGG
CGGCGGCGGCGGTGGCTACAGCGACGACAGGGGTCGACGTCGCGAGGATG
ATGATTATAGCACAAGATGGTACGGGCGAAACGGGGATCGCACAGCGGGG
AGGGGTGGAGGTGATTTCCGCGACGACCGAGCAATGGGGAGTTATCGTGC
GCGTGGTGGTGGCCGTGACGCGGCAGTAGCCACATGCAGGCGAGAAGAGT
CCGGCGGGGACAACAACGCTCGCCGTCGCCATGGAGCCGGCAGCGGCGTC
GCACAAGGAGAAGGTGCCTCTAGTAGTCCGGTTGTGGGTTTCGTCGATGG
GCAGTGGGTGTCGGGCGGGATTCTGGGCGATGATGCCGACAGCGACGCCA
GCAAAGACGCCAACCCCGGGGGGAAGCAAGGCAACGCCGACGGCGGACAG
CGCGAGAGCGGTCACGGCAGCAGTAGCGGCAGCCTCGGCAAGCCTGCCGC
GGTGGAAACAGCAGCTACGGCTACGGCTACCATTCCCGGTACAAGCGGTG
ATGTGCCCAGGCGCCCGCGCTGGGACAAGGCGGCCCCTACCGCTACCGCG
GGCCTGAGCGCCGCGATTGCGAAGGCTTCGGGGAGAGCGGTGTCGGGGAA
AAAGAAGCTGGCGTGGGGCGCCGCTGGTGGCGGTGGGAGTGCCGCAAAGA
GACCGCTGTGGGGGAGTACAACAGAGGCTGGAGTCGCGGCGCCGATGGGC
GGTGGGAATGGATCCGGGATCAGCCCCGAACAGGCTCAGGTGGGATGTGG
TACTGTTCGTGGACCGTGCTTCCCGTGGTACAACGATGGTTATGGCGGTA
ACGAAGAAGGGTACTTCGCAGCTGCTCCCAACCTGTCGTTTCCTTTGCGG
TCGCTGTGGAGTGCTCGAGATGTTTGTCCGTTGCAGTTGAGGTTTCAAGA
AAACGCATATGTAACCACGGAAGACGTCCTGGCCAGTAGGACGACTGGTG
CGGATCTAGAAGGTACTTGAGCAGAGACTGGAACGATTTTTTTTTGTGTG
AAGTCAGCGAAAATCACCATCACAGATAGACTACCAATTCGAGAGAACGT
TGAGTCTCGTTGGAATTGTTGGAAAACACACAGCACCATAAAAGAGCACC
CGCTCGAGATACAGTTGACCTACCTGTTTTGTTCTTTGTTGGTCGCTTGG
AACACGTTGATTTGCTGTTCGTCCCCGAACAACCAGGGTGATATTCCTGG
AGATCCCCACCCCTGCCGCTGTCCTCTTACAGAGGCTTGAATCCAACAGC
AGTTGTCGTGCTCCTCGTGCTTCACCGAGTGGTCTAAAAAAACACAAGAG
GCAAGGGTGGTGGGTAGCATTACAACAGCACAGCTACAGCGCATCAAATC
AGAAGCGTACACCCTCGGGGTGTCTATCTTTCTCTCCTGGAATACCAACG
TCCCGTTGCAGACGTCAGCACCCATCCGTCCATTCATGTACAAAACCTCT
CACACCATTTACGTCAGAATCAACTCCTGACGAGTGATTTGCAGATCTCT
TACCAGACAAATACAAAACATGCTCCTACCTTTTCCCTCCGAGCGCTTGC
CTCCCGTTTTCTCATCTAACAAAAGTTCGCTCGCGTTGCCCCCCCCCCCC
CCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCC
CCCCCCTTCCCTGCCATGCGTACCCCCCGTACCCGTACCTGTCGGGTGGC
AGTGCCGCAGGCACCGGGATCGTGGTGGTGACGACGCCCTCCGTCCTCAG
AACGGGCGAAGACAGACAGCAGGCCGGCTGGTCGCAAGCAAACTTTTTGA
TAATGACACCCACCGTATCAGCTTTTCGATGTTCCGACAACTTTACCCCG
CGTGTGCAAGCATTACACCCCTCCCACCGCCACCACAACGGTTTCCTCTG
TCCTCTCAGGTTTACGCAGGCGAAGACACAAGTATCTCTTACTTGTACGT
TGTAAACCCGATGTTCGTATTTGCGTTTTGCTTGCTGTTCGTGATTGTGG
CGCGATTTTTCGCCGAACACGGGCAGAGTACAAAACCCAGCTCGCGGAGC
TTTCACCCTCTAGGTAGAGGCACCCGAACACGCACTCAATTACCCGTCGG
CCCGCCTGTGACATCTTGCCGCGGCCCCCTCCCTCTTCTTCGTCCCCTCC
TTCACGGGCCGTATTCCCTGTGCCTCGTTACTGACCCACGCGGGTTTAGA
AAATGTTTTCGTCCTCCCTCGCACGGTCTCTTCGTAAAATTCTTGCCCAG
ACCGGGCCATCCGAAAGAAGAGAGAGGATACCTCCACCATGACCAGCCTG
TATATCTGCATACCCGCAGCATCTCCCCACGCCTGTTCCCCTCTTTAGGC
TTGGAAATTCTCGTGTTTCTGTCTTCGTGAGGGCTTCTGGTGTATCATGC
GCCAGTCGAACGCACAGCGCTTCGGGTTGTTTTCTTCCCCGTTAACCAAT
CATTCAGCTTTTTGGACGAGTTTGGTACCAGATGACCCATCTGTCTCTCG
CGTTCACCCTGCTCTCTGGTGCGCGTCCACACGCACCCCCGATGTGGGAG
CTGTCCTGTACATTTTGTTATCACGCTTCTGGCGCCTTTTTTTCACTTGG
TAACGGTGTTGTGGTTTCTGCCCCTGGCTATTTCTTTCTCCCTCGCGAGG
GCATCCAGGGGTCTCCAATTCACGGCAGTAACGTTCTCCGTTGGCACTGA
CTTTGCTCCTGTCTGCCCGCTGACGTCATCCTTTCTCCGATGCGATTGGG
ACCGACCGGTCTGGGCATGGTTCCCAGGAGGGGGATCAACAAGCGGACGG
CGTCGAGCAGAGGTGGCAAGAAGCTGCCGCAGCCTTAGGGCCGGCAGAGC
GGCAGGTTAAGTTCCTCCGGCTGCTGGGTGCAAAGAAGGGAGCGGCGGCG
GCGGCGGCGGGTGCCTCGATCGCCTCGAGAGGGGCGGGAGGCCTGTTTTC
TCCTTCTGGTGCCGGTGGGGCCGGAACCGACGACGGCCTGGCGGCGAACG
CGAAGGTCTTTTCATTTTTTGTTGTGGTTTCAACATGATTTCATGTGTTT
TGCGAGGGTCGTGTTGTAGGTATGTTTTTCGGTTGGTCGTGGTTCGTAAC
AATCGCCCAGTTTTACTCAGCTCTCTTCACATGTTCTATTCACGCTACCC
ACATCCCCCCATAGTCTTGTTTACTTTGCCCGGTCTCAACCTGGTGGTCC
TGCGGGGTGTTTGCGACGAAATCAGCGTGGAAATCTTCGCTTTTGCCGCT
CTAGCGGAGCAATAGAAAGCCTTGTTTACACAATGATTCGTCTCCCAGTT
CGGTGTGCCGAGATCACGGTGTGCGTCGGACCATTTTGTTTGACACTATC
ACCCTCCCAGTTGTCGGGCATACATGCAAGGCAAGGGGGACTGGACCGCA
ACGCTGCTGACAATAGGAAACAGAGTCAGGCGCTGTAGGGGCCAGGGTGG
TGATTAGGAGGGTGGAAAGGCATAACGCCGGTCGCCACCGCCCCTTGGTA
CCATATTCTGCAAGCCCGCCGCTCACTACCCAATAATCCCCCTTTTCCCC
GGCGGCGTGTTTGAAGGTGATGCAAGACTTGGAAATACACTACCAGAAGG
CGCATCGAGCACACTTCGGCTTTCAGCGGGGGCTAGGAAAATGATAAAAC
GGCGTAGATGGGGGCGCAACCCCCGCAAGAGAATGCACTCAATGAGGGAT
GAGGGCAGTATCCTCGATAGTGCGGGACCGCACGCTACGTGTTCGAGACT
ATCCGTCACGGAACTCGTAGAAATCATGAGGGGATTGTGATTTTGGGTGT
ATGGCGGCGTTATTTTCCGACGCTCTCGATTCCTTTGGACCATCGCAAGG
GGTTAGTATTGTCGCGCATCCTCCCCTAGCGATGATGTTCTTCTAGACAT
GTGAGGACACCTTGCTGAGGTGTGGCCGGCATCGAACCCTAACGATGATG
TTCTTTGGAACCGCCTCGACGATTGAGAAGGTGCAGGGCGGATTCTTGGC
TTGTTTGTGTCTTGTGGGCCACGCCGCTTTGTTGTTTCTGACGACCAGTC
ATCCCCCGTTGTCAACTGGGGCAGTGCTATAACGGCCGTGAATTGACGTC
CACGCAGAAAGAAAAACGGCACGTGAGGTAGAGGTGTTGGATAAACATAC
GATGCCGATAAAAGAGGCACTCACGGCTCCTCTAGAAAACTGGTAGTTGG
GGTGCAGGTGGTTGTGATCTGCTGCGTTGGTACAGCAGCAGGAAAGTCCT
TGTAGTGTTCGATGGATTGATGGACAAGTTGAGTAGGGAAGGATTGTTGG
AAGTGTTTTTTTTTATGGGAACAGGAACACGGGTAGGTTGGGGGTGTTCG
TTGTCCGAGTGATGTGGTGAGTTCAAGAGGGGATAGCGGCATACGTAATG
GTCAATCCAGGCATTCATATCTAGAAGAGTCCACGATGTAGTCATGGGGT
CGAAGTGGGTTTGTTTTTCTTCGCGGCAGTGCCGTTTCCTCCAGAGGTGG
CGTTCTGAAAGGATGCTCGTGTTTTCACATATGCATATGATAAAAGTGCC
CCGGGCAAACCTCGAGACGCATACGGAGAATGTTAACCATCACACCCGCC
TGTAGCTCTCCCGACGACGGGACTGTTGATGTCGGGAAGTATGCATATGT
ATCTGCAAGCTGCGTGCTTTAGTCGAAGGAATGGCTTGCCAAGTCTCGGT
TGGTACTGAATATTCTTGGGGAACATGCTTCTACAAGCAGTAGTCCGACG
AACGACACCATGCCTGTACAACGCATGGACACCTAAAAACGCTGTGGTGT
GCACCACGGCTGTCTCAATCTCTTCACGACTTCGTAGCTACGCCACAGAC
CGCACGTGTTGCCACTACCAATAGCATCCCCCCTCTGCGGGCGCCCGCTA
GTAGCAGCGGAAGC
back to top

Coding sequence (CDS) from alignment at Scaffold_26:391975..397188-

>EsuBft1094_18a-0001 ID=EsuBft1094_18a-0001|Name=EsuBft1094_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=405bp|location=Sequence derived from alignment at Scaffold_26:391975..397188- (Ectocarpus subulatus male Bft15b)
ATGGTTCCAGGGAAAGGTCTGGGGGGTCCAGGCGCGACGGCGGTGGCCGA
AGGGACTACGACGGCAGCAGGGACAGGCAATATGGTTACATTGGGGGGGG
CGGCGGGAGACACGGCGTCTACCGGGATTCCAGCAGGGGTCGGTACGAAC
GTGATCGGGGTGGCGGCGCCGACGGTTCAAGAGGCCGTTACGGAGAGGGT
GATGGAGGACGTAGGCCGTGGGCAGGCGGCGGCGGCGGTGGCTACAGCGA
CGACAGGGGTCGACGTCGCGAGGATGATGATTATAGCACAAGATGGTACG
GGCGAAACGGGGATCGCACAGCGGGGAGGGGTGGAGGTGATTTCCGCGAC
GACCGAGCAATGGGGAGTTATCGTGCGCGTGGTGGTGGCCGTGACGCGGC
AGTAG
back to top