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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 67593.Physo132874 |
| ProteomeId | EsuBft1094_14 |
| Protein domains | IPR013103 |
| Protein domains | SSF56672 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 2 |
| Max annot lvl | 4776|Peronosporales |
| Length | 2924 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.06e-94 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,3QH4V@4776|Peronosporales |
| Date last modified | 2016-06-15 |
| Date creation | 2016-06-15 |
| Description | GAG-pre-integrase domain |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0003824 |
| GO | 0097159 |
| GO | 1901363 |
| GO | 0044424 |
| GO | 0090304 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1094_14a-0001 ID=EsuBft1094_14a-0001|Name=EsuBft1094_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2924bp|location=Sequence derived from alignment at Scaffold_26:354149..357587+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGTGGGGGGAGCTCATGATGACTGCAGCATACCTGACCAACAGGACCCC ACACGCGGCGCTAGGGGGAGCCACGCCGTATTCCAAGATGTACAACACAA CCCCGGACCTCTCTCGACTTCGTGCCGTCGGCGCCCGCGCGTTCGTTCAT CACGAGCGATACAAGAAGAAGCTAGACGATCGGGCCTTTGAAGGCAAGCT CTGCGGTTACGGACCTGACAGCAAGACGTACCGGATCTACGTGGAGGGCA AAGACAAGGACACGACACTCGAATCACCCACGACGCCAACAGACACGGAC TCCGCTTCGCCAGCCCCCATCCCAATGCGTCGATTAACGGTGACCCGTCC TGCCACGCGCACTCACCAACCCACAGATGACCCTATCGACCCTTCATGCA TCCCGAAATCTCTGGAAGTGAACATGAACGACAGAGGCCGCTCTGCCATG GCTGTCAGCCACCCCGACCCACTGGAGCTCACCGAGGATCAACTACTCGA TCTCACCCACCAAGCGCAGCAACGATGCCCTACTGACGCGGCGGATTTTG CTCACCTGGATGAAGACCCCTTCGCCGAAGTCCGGGCGTATGCTTACGCC ATGGGCACCTCGAGCAAAGGGTTCTTGGGGGAGACACACCAAGAGATCAA AACTCCGAGCACGTACACCGAAGCCATGAACTCACCACAACGCGAGCAGT GGAAGAGCGCTATCGACACCGAGATGGGTAATCTCGCCAAGCACAAAGTC TTTAAGAAAGTACGCATCAGCCTGGTACCGAAGGATGAGGACATCTTCGA CACACGCTTCGTGTTCAAGATCAAGGCCGACAGCCGCTTCAAGGCCCGCT TAGTCGCGGGGGGACACCGCCAACGAGCAGGACGACACTTCGGAAGGAAC TACGCTCCAGTAACCCGATTGGGTAGCATCCGAATGCTATTCGCCATCGC TTGCGAACACGGATGGGAGGTGTACCAATTGGACGTGGTAGCTGCATTCC TGAACGCGTACACCGACAGAGACGTCTACGTCAGGCCGGCGCCAGGCGAC GAGGAGAGGGACCCTACGACAGGTGAAATGATGGTCTACAAACTGGAGAA AAGTCTGTACGGCCTGTCACAGTCCCCGTCACTGTGGAACGACGCCATCA ATGACAGACTCATCATCTTCGGCTGGCAGCGCACTCGCTCTGACCCCTGT GTCTACATCTTCGTAAGCGGGGACGAACTCACAATCCTCGCGATCTACGT CGATGACATCCTCATCACGGGCGGAAACAAGGAGATCGTAAGCAGGAAAA AGAAGGAACTCATGGACAGCTTCGAAATGACAGACATGGGAGAGGTCAAG CGCGTAATCGGCATCGAAGTGCAGCGGGACTACGAACATGGCACACTAGC CATATCGCAAGGACCCTACGCGAGAGATATCCTACAGCGATACGGAATGG AACAGGCAAACCCGGTCAGCACCCCCGGGTATGGAGTAGAACTATCAACC GAGCAGCCACAAGACCAACTACTCGGACCCGAGGACAAGCAGAGATTCCA GGCCATCACCGGGAGTCTCCTGTACCTTGCCCAATGCACCCGCTACGATC TGTCATACGCAGTGCACCAACTGACACGGGCATGCGCAAACCCAGCACAG GTCCACATGGCTGCGGCCAAGCACCTACTACGGTACCTACGCGGAACGCC GGACCTGCCGATCGTGTACAAGAAGGGGAAGTTCAGACTCTCGTGCTTCA CTGACTCGTCATTTGGAGCCAACCCAGACAACGGCAGGTCTACCACCGGA TACCTGTTCTTCCTAGGAGGGGGACTGATCAGCTACGGAGCCAAGGCACA GACTCTCGCAGCACAGAACACCGTGGAGGCCGAGCTTCAAGCGCTGAGCT TCAGTGCTCGCGAGGCAGTCTACATCTCCAACTTCATGACGGAAATCGGA TTCAAGACCTTTCGATCGGTACCCATCAACAGCGACAGCACCGGAGCATT GACTGTGGCCAGCAACGCGATGTTCAGCTCTAGAACCAAGCACATCGCGC TCCGGTTCTTCTTCCTCAGGGAACTCACGAAGGGGCACCGGATCACTCTT CACCACCAACCTAGTGCCACGATGTTGGCGGACATCGCGACGAAACATCT CCCGAAGCAGCGATTCGCCACCATCATGCAACTCATCAAGGACTACAAGT GCTAGAAGATATTAAGCACAAGACCGCATAGTATGGTTGAATGTTTTGGA CCCGTGTATTGCTCACAGGATGGATTCACTCATGTGGAGGTCGATATTCT TTGATATGGATTGGGAATCGAGGGGTCGCAAAAATGGCGGCGAAGTGAAT GAAGTTTGGAACATCGGCTACTTGCCTAATCGAGGGGACGTGTCGAGGAA AACTGTTACAACGTAGTCAGGCACAGTTTACCATAGGTGCGACTGCGACA ACTAGACTTCCGTAGACATAATACAGAAAGAAGAGATGGTACTTAGCAGA GAACATGAGCACAGAGTTGTAGCGGAGATAATTTGGCAGGCGAGACTGTA GTTGTTTTATTGTTCCGAACCCCGAAATTCCGGTACTCGGGCCATTACCC CGGAGACCCTCGGAACCTGCTGTGTTTTTGCTGCTTTTTTTTTTGTTTTT GTTTTATTGTTGAGATGAGACACAAGCGCGCCTTCGCCCCTTGTGCTCAC TCTCATCTAGCACCCATCAAAGCCTGACCAGGGAGTCAATTGATAAGAAA ATCTATCTACATTTCTCTTTCCAGAGCTCGCTCGGGCCTACCGATCTCAC AGCGGTGTAGACCAACCTCTGTGATAGAGCGGTGACAGCAGTGTAACCTC TGTGGTAGACTACAAAGTCTACGAGCTACAGCAGCACCGCCACCCCCGCT GCTGCAGGACGCCACATTTTGTGA back to topprotein sequence of EsuBft1094_14a-0001 >EsuBft1094_14 ID=EsuBft1094_14|Name=EsuBft1094_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=734bp
MWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLRAVGARAFVH HERYKKKLDDRAFEGKLCGYGPDSKTYRIYVEGKDKDTTLESPTTPTDTD SASPAPIPMRRLTVTRPATRTHQPTDDPIDPSCIPKSLEVNMNDRGRSAM AVSHPDPLELTEDQLLDLTHQAQQRCPTDAADFAHLDEDPFAEVRAYAYA MGTSSKGFLGETHQEIKTPSTYTEAMNSPQREQWKSAIDTEMGNLAKHKV FKKVRISLVPKDEDIFDTRFVFKIKADSRFKARLVAGGHRQRAGRHFGRN YAPVTRLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGD EERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPC VYIFVSGDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVK RVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELST EQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQ VHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTG YLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIG FKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITL HHQPSATMLADIATKHLPKQRFATIMQLIKDYKC back to topmRNA from alignment at Scaffold_26:354149..357587+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1094_14a-0001 ID=EsuBft1094_14a-0001|Name=EsuBft1094_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3439bp|location=Sequence derived from alignment at Scaffold_26:354149..357587+ (Ectocarpus subulatus male Bft15b) ATGTGGGGGGAGCTCATGATGACTGCAGCATACCTGACCAACAGGACCCC
ACACGCGGCGCTAGGGGGAGCCACGCCGTATTCCAAGATGTACAACACAA
CCCCGGACCTCTCTCGACTTCGTGCCGTCGGCGCCCGCGCGTTCGTTCAT
CACGAGCGATACAAGAAGAAGCTAGACGATCGGGCCTTTGAAGGCAAGCT
CTGCGGTTACGGACCTGACAGCAAGACGTACCGGATCTACGTGGAGGGCA
AAGACAAGGTCTACGAGAGCCGGAACGTGACTTTCATCGAGACTCCACCC
AACACCATCCCCCCTCACCGGTGGGACGACCGTCTCGGATATGACTAGGA
CGTGATGAACTTCATGTCATTGCTCGGACGCCGTACCTCTACGGGCGACA
AAGACAACAAAGTGAACTCCGGAACACAATCAGAGCTCCTGCTGCACGAG
ATGCGCAACATGCAGCAAGACAACATCAACCGAGCAGAACTTCGCCAAAA
CAACGCGGGCATGGACACACAACTACTTTGCTGCTGGGGGAGCTGACAGC
AACAACAACCCGCGGACTACGACACCATCCAGGACATCGCAGGACACGAC
ACTCGAATCACCCACGACGCCAACAGACACGGACTCCGCTTCGCCAGCCC
CCATCCCAATGCGTCGATTAACGGTGACCCGTCCTGCCACGCGCACTCAC
CAACCCACAGATGACCCTATCGACCCTTCATGCATCCCGAAATCTCTGGA
AGTGAACATGAACGACAGAGGCCGCTCTGCCATGGCTGTCAGCCACCCCG
ACCCACTGGAGCTCACCGAGGATCAACTACTCGATCTCACCCACCAAGCG
CAGCAACGATGCCCTACTGACGCGGCGGATTTTGCTCACCTGGATGAAGA
CCCCTTCGCCGAAGTCCGGGCGTATGCTTACGCCATGGGCACCTCGAGCA
AAGGGTTCTTGGGGGAGACACACCAAGAGATCAAAACTCCGAGCACGTAC
ACCGAAGCCATGAACTCACCACAACGCGAGCAGTGGAAGAGCGCTATCGA
CACCGAGATGGGTAATCTCGCCAAGCACAAAGTCTTTAAGAAAGTACGCA
TCAGCCTGGTACCGAAGGATGAGGACATCTTCGACACACGCTTCGTGTTC
AAGATCAAGGCCGACAGCCGCTTCAAGGCCCGCTTAGTCGCGGGGGGACA
CCGCCAACGAGCAGGACGACACTTCGGAAGGAACTACGCTCCAGTAACCC
GATTGGGTAGCATCCGAATGCTATTCGCCATCGCTTGCGAACACGGATGG
GAGGTGTACCAATTGGACGTGGTAGCTGCATTCCTGAACGCGTACACCGA
CAGAGACGTCTACGTCAGGCCGGCGCCAGGCGACGAGGAGAGGGACCCTA
CGACAGGTGAAATGATGGTCTACAAACTGGAGAAAAGTCTGTACGGCCTG
TCACAGTCCCCGTCACTGTGGAACGACGCCATCAATGACAGACTCATCAT
CTTCGGCTGGCAGCGCACTCGCTCTGACCCCTGTGTCTACATCTTCGTAA
GCGGGGACGAACTCACAATCCTCGCGATCTACGTCGATGACATCCTCATC
ACGGGCGGAAACAAGGAGATCGTAAGCAGGAAAAAGAAGGAACTCATGGA
CAGCTTCGAAATGACAGACATGGGAGAGGTCAAGCGCGTAATCGGCATCG
AAGTGCAGCGGGACTACGAACATGGCACACTAGCCATATCGCAAGGACCC
TACGCGAGAGATATCCTACAGCGATACGGAATGGAACAGGCAAACCCGGT
CAGCACCCCCGGGTATGGAGTAGAACTATCAACCGAGCAGCCACAAGACC
AACTACTCGGACCCGAGGACAAGCAGAGATTCCAGGCCATCACCGGGAGT
CTCCTGTACCTTGCCCAATGCACCCGCTACGATCTGTCATACGCAGTGCA
CCAACTGACACGGGCATGCGCAAACCCAGCACAGGTCCACATGGCTGCGG
CCAAGCACCTACTACGGTACCTACGCGGAACGCCGGACCTGCCGATCGTG
TACAAGAAGGGGAAGTTCAGACTCTCGTGCTTCACTGACTCGTCATTTGG
AGCCAACCCAGACAACGGCAGGTCTACCACCGGATACCTGTTCTTCCTAG
GAGGGGGACTGATCAGCTACGGAGCCAAGGCACAGACTCTCGCAGCACAG
AACACCGTGGAGGCCGAGCTTCAAGCGCTGAGCTTCAGTGCTCGCGAGGC
AGTCTACATCTCCAACTTCATGACGGAAATCGGATTCAAGACCTTTCGAT
CGGTACCCATCAACAGCGACAGCACCGGAGCATTGACTGTGGCCAGCAAC
GCGATGTTCAGCTCTAGAACCAAGCACATCGCGCTCCGGTTCTTCTTCCT
CAGGGAACTCACGAAGGGGCACCGGATCACTCTTCACCACCAACCTAGTG
CCACGATGTTGGCGGACATCGCGACGAAACATCTCCCGAAGCAGCGATTC
GCCACCATCATGCAACTCATCAAGGACTACAAGTGCTAGAAGATATTAAG
CACAAGACCGCATAGTATGGTTGAATGTTTTGGACCCGTGTATTGCTCAC
AGGATGGATTCACTCATGTGGAGGTCGATATTCTTTGATATGGATTGGGA
ATCGAGGGGTCGCAAAAATGGCGGCGAAGTGAAGTTTTGGAACATCGGCT
ACTTGCTTAATAGAGGGGTCGTGTCGAGGAAAACTGTTACAACGTTGTCA
GGCACAGTCTACCATAGGTGCGACTGCGGCAACCAGCCTTCCGTAGAAAT
AATACAGAAAGAAGANTCTTTGATATGGATTGGGAATCGAGGGGTCGCAA
AAATGGCGGCGAAGTGAAGTTTGGAACATCGGCTACTTGCCTAATCGAGG
GGACGTGTCGAGGAAAACTGTTACAACGTAGTCAGGCACAGTTTACCATA
GGTGCGACTGCGACAACTAGACTTCCGTAGACATAATACAGAAAGAAGAG
ATGGTACTTAGCAGAGAACATGAGCACAGAGTTGTAGCGGAGATAATTTG
GCAGGCGAGACTGTAGTTGTTTTATTGTTCCGAACCCCGAAATTCCGGTA
CTCGGGCCATTACCCCGGAGACCCTCGGAACCTGCTGTGTTTTTGCTGCT
TTTTTTTTTGTTTTTGTTTTATTGTTGAGATGAGACACAAGCGCGCCTTC
GCCCCTTGTGCTCACTCTCATCTAGCACCCATCAAAGCCTGACCAGGGAG
TCAATTGATAAGAAAATCTATCTACATTTCTCTTTCCAGAGCTCGCTCGG
GCCTACCGATCTCACAGCGGTGTAGACCAACCTCTGTGATAGAGCGGTGA
CAGCAGTGTAACCTCTGTGGTAGACTACAAAGTCTACGAGCTACAGCAGC
ACCGCCACCCCCGCTGCTGCAGGACGCCACATTTTGTGA back to topCoding sequence (CDS) from alignment at Scaffold_26:354149..357587+ >EsuBft1094_14a-0001 ID=EsuBft1094_14a-0001|Name=EsuBft1094_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2205bp|location=Sequence derived from alignment at Scaffold_26:354149..357587+ (Ectocarpus subulatus male Bft15b) ATGTGGGGGGAGCTCATGATGACTGCAGCATACCTGACCAACAGGACCCC ACACGCGGCGCTAGGGGGAGCCACGCCGTATTCCAAGATGTACAACACAA CCCCGGACCTCTCTCGACTTCGTGCCGTCGGCGCCCGCGCGTTCGTTCAT CACGAGCGATACAAGAAGAAGCTAGACGATCGGGCCTTTGAAGGCAAGCT CTGCGGTTACGGACCTGACAGCAAGACGTACCGGATCTACGTGGAGGGCA AAGACAAGGACACGACACTCGAATCACCCACGACGCCAACAGACACGGAC TCCGCTTCGCCAGCCCCCATCCCAATGCGTCGATTAACGGTGACCCGTCC TGCCACGCGCACTCACCAACCCACAGATGACCCTATCGACCCTTCATGCA TCCCGAAATCTCTGGAAGTGAACATGAACGACAGAGGCCGCTCTGCCATG GCTGTCAGCCACCCCGACCCACTGGAGCTCACCGAGGATCAACTACTCGA TCTCACCCACCAAGCGCAGCAACGATGCCCTACTGACGCGGCGGATTTTG CTCACCTGGATGAAGACCCCTTCGCCGAAGTCCGGGCGTATGCTTACGCC ATGGGCACCTCGAGCAAAGGGTTCTTGGGGGAGACACACCAAGAGATCAA AACTCCGAGCACGTACACCGAAGCCATGAACTCACCACAACGCGAGCAGT GGAAGAGCGCTATCGACACCGAGATGGGTAATCTCGCCAAGCACAAAGTC TTTAAGAAAGTACGCATCAGCCTGGTACCGAAGGATGAGGACATCTTCGA CACACGCTTCGTGTTCAAGATCAAGGCCGACAGCCGCTTCAAGGCCCGCT TAGTCGCGGGGGGACACCGCCAACGAGCAGGACGACACTTCGGAAGGAAC TACGCTCCAGTAACCCGATTGGGTAGCATCCGAATGCTATTCGCCATCGC TTGCGAACACGGATGGGAGGTGTACCAATTGGACGTGGTAGCTGCATTCC TGAACGCGTACACCGACAGAGACGTCTACGTCAGGCCGGCGCCAGGCGAC GAGGAGAGGGACCCTACGACAGGTGAAATGATGGTCTACAAACTGGAGAA AAGTCTGTACGGCCTGTCACAGTCCCCGTCACTGTGGAACGACGCCATCA ATGACAGACTCATCATCTTCGGCTGGCAGCGCACTCGCTCTGACCCCTGT GTCTACATCTTCGTAAGCGGGGACGAACTCACAATCCTCGCGATCTACGT CGATGACATCCTCATCACGGGCGGAAACAAGGAGATCGTAAGCAGGAAAA AGAAGGAACTCATGGACAGCTTCGAAATGACAGACATGGGAGAGGTCAAG CGCGTAATCGGCATCGAAGTGCAGCGGGACTACGAACATGGCACACTAGC CATATCGCAAGGACCCTACGCGAGAGATATCCTACAGCGATACGGAATGG AACAGGCAAACCCGGTCAGCACCCCCGGGTATGGAGTAGAACTATCAACC GAGCAGCCACAAGACCAACTACTCGGACCCGAGGACAAGCAGAGATTCCA GGCCATCACCGGGAGTCTCCTGTACCTTGCCCAATGCACCCGCTACGATC TGTCATACGCAGTGCACCAACTGACACGGGCATGCGCAAACCCAGCACAG GTCCACATGGCTGCGGCCAAGCACCTACTACGGTACCTACGCGGAACGCC GGACCTGCCGATCGTGTACAAGAAGGGGAAGTTCAGACTCTCGTGCTTCA CTGACTCGTCATTTGGAGCCAACCCAGACAACGGCAGGTCTACCACCGGA TACCTGTTCTTCCTAGGAGGGGGACTGATCAGCTACGGAGCCAAGGCACA GACTCTCGCAGCACAGAACACCGTGGAGGCCGAGCTTCAAGCGCTGAGCT TCAGTGCTCGCGAGGCAGTCTACATCTCCAACTTCATGACGGAAATCGGA TTCAAGACCTTTCGATCGGTACCCATCAACAGCGACAGCACCGGAGCATT GACTGTGGCCAGCAACGCGATGTTCAGCTCTAGAACCAAGCACATCGCGC TCCGGTTCTTCTTCCTCAGGGAACTCACGAAGGGGCACCGGATCACTCTT CACCACCAACCTAGTGCCACGATGTTGGCGGACATCGCGACGAAACATCT CCCGAAGCAGCGATTCGCCACCATCATGCAACTCATCAAGGACTACAAGT GCTAG back to top
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