EsuBft1094_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1094_11a-0001
Unique NameEsuBft1094_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_26contigScaffold_26:312338..315064 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FI08
ProteomeIdEsuBft1094_11
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length107
Evalue4.34e-86
EggNOG OGs2DCSR@1|root,2S5KN@2759|Eukaryota
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_11aEsuBft1094_11aEctocarpus subulatus male Bft15bgeneScaffold_26 312338..315064 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_11a-0001EsuBft1094_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_26 312338..314160 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_11a-0001-exonEsuBft1094_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_26 312338..312598 -
EsuBft1094_11a-0001-exonagat-exon-88956Ectocarpus subulatus male Bft15bexonScaffold_26 313702..314311 -
EsuBft1094_11a-0001-exonagat-exon-88955Ectocarpus subulatus male Bft15bexonScaffold_26 314864..315064 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_11a-0001-cdsEsuBft1094_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_26 312338..312598 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_11a-0001-exonagat-five_prime_utr-562Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_26 314161..314311 -
EsuBft1094_11a-0001-exonagat-five_prime_utr-563Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_26 314864..315064 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1094_11a-0001 ID=EsuBft1094_11a-0001|Name=EsuBft1094_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1072bp|location=Sequence derived from alignment at Scaffold_26:312338..315064- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCTAAAGAACACGCACACATATAACGAGAAAAAGGTATCCCAAGAGCCCG
AAGAGGTACACCTAAAAATCCCTGCAGCACCGTATGCGTGCCCAAAAACT
GAACTGCACGTCCGTCCCACCGTTCGACTACAATAGCATCACCCCCTCCC
TGTCCCACTCTATTATACCAAAACGGAAGATTGCCGACTACTGCTCTCAA
GGTGTGCCGAAGTTGGGTGCATACATACACCTCGAAATCATCTGCAATTT
TTGCGGAGGAGAGGGTGGGCACTGTACGCGTCGCGCCCCCTTGGCGGCTG
CCAGGCCACGCACGTGCAGCGGGCCACGAGTTGCCTGCCGTGCAGGGGGA
TCATGTCCCTTTTCAATCCCTTATCCCATGGGTTGTTGAAAGATCTTGGC
AAACTTGCAGAGTTGAAAGGACGGGGTCTAATTCTTGACCGTCACTTCGA
GACGATTAAAACAAGTGTGAAGGCGGGAAACTCCATTGCGAAGGAGCGGT
GGGACGCCATCGAGAGCGCGTGGGGGTCGAAGCAGAACGGTATCTTCGAT
GAAGGAGAGTGGATCGCGCAGATTGATTGTGAAATCCAGGGCATTACCAG
CAGCACCCGCCTGTCCTTGTCATCCCAACAAGATGCCAGCAGCGCACGAG
GTGCTGCTGCACCTTCTCAGCACCCACCTGCTGCTGCAGCGGGTACCGCG
AGGAGGAAGAAGGTGGATCGAGGGAAGCACGCCAGGGAAAGAGCTGCGAA
AGGCACTTTAGGTGGCAAATCTGCAATCTGCAACGCGTTCTCGATTGGCA
GCGGACAACCGCACAGCAGTGCAAACATGTCCAACGGCGTGCGGCTGCGG
CGTATGCTACGGAAGAATCTCGAAGGGCGTGTCCGGCCGTGGGAAGAAGC
CGGGCCTGGGCGTTGTTGGCACGTGAAGGACGATGATGCGACGGGGGCGG
CTTCGTTTGTCCTCCAGCGGAAGCTCTTTCTCGATCTAGACTTGGAAAGC
GACGGCTTTATGGACCGCGACACCAAGGAAACTCGTGGAGCTCCCAAGCG
CAGGCGATACACTATAGGCNAG
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protein sequence of EsuBft1094_11a-0001

>EsuBft1094_11 ID=EsuBft1094_11|Name=EsuBft1094_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=240bp
MSLFNPLSHGLLKDLGKLAELKGRGLILDRHFETIKTSVKAGNSIAKERW
DAIESAWGSKQNGIFDEGEWIAQIDCEIQGITSSTRLSLSSQQDASSARG
AAAPSQHPPAAAAGTARRKKVDRGKHARERAAKGTLGGKSAICNAFSIGS
GQPHSSANMSNGVRLRRMLRKNLEGRVRPWEEAGPGRCWHVKDDDATGAA
SFVLQRKLFLDLDLESDGFMDRDTKETRGAPKRRRYTIGX
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mRNA from alignment at Scaffold_26:312338..315064-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1094_11a-0001 ID=EsuBft1094_11a-0001|Name=EsuBft1094_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2727bp|location=Sequence derived from alignment at Scaffold_26:312338..315064- (Ectocarpus subulatus male Bft15b)
TCTAAAGAACACGCACACATATAACGAGAAAAAGGTATCCCAAGAGCCCG
AAGAGGTACACCTAAAAATCCCTGCAGCACCGTATGCGTGCCCAAAAACT
GAACTGCACGTCCGTCCCACCGTTCGACTACAATAGCATCACCCCCTCCC
TGTCCCACTCTATTATACCAAAACGGAAGATTGCCGACTACTGCTCTCAA
GGTTCTTGGTCTGAAAAAAATAAAAATTCTCGCGCCGAATGGTCAACCAG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCTACAACCCATGTCTAAGCAAAAGCTTGTCGAGGA
GCGAGGGGAAGAAGGGAGAAAACAAAAAAATATGGTGCTAAAAGAAAAAC
AAAGATAAAGAATTTGCCGGTAAAGAACACGTGCTCAGATTGCACCTGCA
GTTAAGAATACGAACGCACGCCTGAGGTGTACCAATGCTGCTAAAATAAG
AACAAGAGCACATTCAGCAGCTGCGAGATAAGAACATTCGAACGGGGAGG
GGGGGAAGGGCGGGGGGGTGATCGAAGTAGTATTGGATTTTTCAGGGGGA
TAGGTGTGCCGAAGTTGGGTGCATACATACACCTCGAAATCATCTGCAAT
TTTTGCGGAGGAGAGGGTGGGCACTGTACGCGTCGCGCCCCCTTGGCGGC
TGCCAGGCCACGCACGTGCAGCGGGCCACGAGTTGCCTGCCGTGCAGGGG
GATCATGTCCCTTTTCAATCCCTTATCCCATGGGTTGTTGAAAGATCTTG
GCAAACTTGCAGAGTTGAAAGGACGGGGTCTAATTCTTGACCGTCACTTC
GAGACGATTAAAACAAGTGTGAAGGCGGGAAACTCCATTGCGAAGGAGCG
GTGGGACGCCATCGAGAGCGCGTGGGGGTCGAAGCAGAACGGTATCTTCG
ATGAAGGAGAGTGGATCGCGCAGATTGATTGTGAAATCCAGGGCATTACC
AGCAGCACCCGCCTGTCCTTGTCATCCCAACAAGATGCCAGCAGCGCACG
AGGTGCTGCTGCACCTTCTCAGCACCCACCTGCTGCTGCAGCGGGTACCG
CGAGGAGGAAGAAGGTGGATCGAGGGAAGCACGCCAGGGAAAGAGCTGCG
AAAGGCACTTTAGGTGGCAAATCTGCAATCTGCAACGCGTTCTCGATTGG
CAGCGGACAACCGGTGAGTTCGGTTACAAATGTATCCGACGCACGCTGTT
GCTTTGTATCGCCGCACAGGTGTAATAATTTTGTTTTTGTTTACTTAGCT
AGTTCCCGATAGTCTAGTGTAGTCTAGCAAGAGGAAAAATGACAAAAAAT
TTAAGTATATTTAGACTAGACTAGTCTAATGTGACCCAAACGAAAAAAAA
GGCGTCATCTCCCCACTCTCTCGTGTGATTCACGATAAGCTTTCAAGGAA
GTATTCGTTGAGTGAATATAGATACTTTTGCCAGCGGCATCCACGGAAGT
TTGAATTCTACAGCGCCACAACAAGAACGACTGACACGTCACATGGCTCG
TTGAATCTCTTCGGTAAAGGCTGACCATTTGACTACGTGCACAGGCATCG
GATGACTTTGCATGCATGTATGTAGTCAAATGGTCAGCCTTTAACCAATG
AAAGATACACTCTCGGCTCGTAACCAATCCCAGTGGATCTGATAGGTAGG
GTGTAGTGATCTCCGGGGACGGACCCCTCGCTGCATGTTGCTGCTATTAG
CCGATGATGGTGCCTTGAAAGCGATTCACCGGGAGTCAAACCCGTGCGTG
AATCCTTTATTTACTCGTTAAAGGCTGACAATTTCACTACATGAAAAGAG
CGTAATGATGCTTGGGAAAGTGACCAGCCGGGTTTCGAACCTGTGCGTGA
ATCCTTTGCCGCCAAATACTACCCCATTAGACAAGTCAGCTTCAGGCAGC
GTCTGGCGAGGGATCCGTCCCCGAACATCTCTACTCACGAACCCAAAAAC
GTGATCCAGCCGGGTGCAAATGAGCTCTGAGCATATCTTTTATTCGTTAA
AGGCTGACCATTTGACTACGTGCACAGTCATCGATGACTGTGCACGTAGT
CAAATGGTCAGCCTTTAACGAATAGAATCCCCTACACGGCAATTCCGCCA
TTTCCCATCGCGCCGAGCAGATTGAGCGGGCTCGTGGTGGAGTGAAAGAG
TTCGTATCCGGTATCGATGCTTCCCGCCTCCGTCCCCGGAGTCCCGCCGA
TCCTGCCCTCACTGTCCCATGACCTTCGTGACCGAGCAAGGCCTTGGGGT
CCACGTGAGAACGCAGCACAGCAGTGCAAACATGTCCAACGGCGTGCGGC
TGCGGCGTATGCTACGGAAGAATCTCGAAGGGCGTGTCCGGCCGTGGGAA
GAAGCCGGGCCTGGGCGTTGTTGGCACGTGAAGGACGATGATGCGACGGG
GGCGGCTTCGTTTGTCCTCCAGCGGAAGCTCTTTCTCGATCTAGACTTGG
AAAGCGACGGCTTTATGGACCGCGACACCAAGGAAACTCGTGGAGCTCCC
AAGCGCAGGCGATACACTATAGGCNAG
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Coding sequence (CDS) from alignment at Scaffold_26:312338..315064-

>EsuBft1094_11a-0001 ID=EsuBft1094_11a-0001|Name=EsuBft1094_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=720bp|location=Sequence derived from alignment at Scaffold_26:312338..315064- (Ectocarpus subulatus male Bft15b)
ATGTCCCTTTTCAATCCCTTATCCCATGGGTTGTTGAAAGATCTTGGCAA
ACTTGCAGAGTTGAAAGGACGGGGTCTAATTCTTGACCGTCACTTCGAGA
CGATTAAAACAAGTGTGAAGGCGGGAAACTCCATTGCGAAGGAGCGGTGG
GACGCCATCGAGAGCGCGTGGGGGTCGAAGCAGAACGGTATCTTCGATGA
AGGAGAGTGGATCGCGCAGATTGATTGTGAAATCCAGGGCATTACCAGCA
GCACCCGCCTGTCCTTGTCATCCCAACAAGATGCCAGCAGCGCACGAGGT
GCTGCTGCACCTTCTCAGCACCCACCTGCTGCTGCAGCGGGTACCGCGAG
GAGGAAGAAGGTGGATCGAGGGAAGCACGCCAGGGAAAGAGCTGCGAAAG
GCACTTTAGGTGGCAAATCTGCAATCTGCAACGCGTTCTCGATTGGCAGC
GGACAACCGCACAGCAGTGCAAACATGTCCAACGGCGTGCGGCTGCGGCG
TATGCTACGGAAGAATCTCGAAGGGCGTGTCCGGCCGTGGGAAGAAGCCG
GGCCTGGGCGTTGTTGGCACGTGAAGGACGATGATGCGACGGGGGCGGCT
TCGTTTGTCCTCCAGCGGAAGCTCTTTCTCGATCTAGACTTGGAAAGCGA
CGGCTTTATGGACCGCGACACCAAGGAAACTCGTGGAGCTCCCAAGCGCA
GGCGATACACTATAGGCNAG
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