EsuBft1093_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1093_8a-0001
Unique NameEsuBft1093_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_133contigScaffold_133:354470..354912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1093_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length24
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1093_8aEsuBft1093_8aEctocarpus subulatus male Bft15bgeneScaffold_133 354470..354912 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1093_8a-0001-exonEsuBft1093_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_133 354470..354480 +
EsuBft1093_8a-0001-exonagat-exon-39120Ectocarpus subulatus male Bft15bexonScaffold_133 354678..354912 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1093_8a-0001-cdsEsuBft1093_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_133 354470..354480 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1093_8a-0001-exonagat-three_prime_utr-896Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_133 354745..354912 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1093_8a-0001EsuBft1093_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_133 354470..354744 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1093_8a-0001 ID=EsuBft1093_8a-0001|Name=EsuBft1093_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=246bp|location=Sequence derived from alignment at Scaffold_133:354470..354912+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCATGAAGTTCCCTCTGAAGCGCTGGTCGCGGGGGTGCAAAGGTGT
TTTGAAACTACAGGTGTTTTCGGCGTAAATTTTTACCGTAGCGGCAAGCC
TATAATCAGGAAAAAACTATCCTTATTTGACCTTGAATATATCATCAGGT
GTGCTCCAATGGGCGTGGAATTGTGCGTACAGTCGAATCATACCCTGTAG
AACGTCGTGTGGTTCGTACCCTGTTTGATGGTGACGTTCGTGCGTT
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protein sequence of EsuBft1093_8a-0001

>EsuBft1093_8 ID=EsuBft1093_8|Name=EsuBft1093_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=25bp
MVMKFPLKRWSRGCKGVLKLQVFSA
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mRNA from alignment at Scaffold_133:354470..354912+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1093_8a-0001 ID=EsuBft1093_8a-0001|Name=EsuBft1093_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=443bp|location=Sequence derived from alignment at Scaffold_133:354470..354912+ (Ectocarpus subulatus male Bft15b)
ATGGTCATGAAGTTATACCCGCAGTCGATATGTACCCTGTAGAACGTCGC
ATGCGTAGGCTATGCGACGGTGAATTTAGGGCGTGCCAGCACTGGGGGGG
CAGGATGCACAGGGTTTGAACCCAACCCGGGGATGTCATCGTTTTGTCCC
CGGGTGACCTGTGTGTGTTTTTTTTTTTTTGCGATAGATGTTTTTCACAT
GCTCACAGGTTCCCTCTGAAGCGCTGGTCGCGGGGGTGCAAAGGTGTTTT
GAAACTACAGGTGTTTTCGGCGTAAATTTTTACCGTAGCGGCAAGCCTAT
AATCAGGAAAAAACTATCCTTATTTGACCTTGAATATATCATCAGGTGTG
CTCCAATGGGCGTGGAATTGTGCGTACAGTCGAATCATACCCTGTAGAAC
GTCGTGTGGTTCGTACCCTGTTTGATGGTGACGTTCGTGCGTT
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Coding sequence (CDS) from alignment at Scaffold_133:354470..354912+

>EsuBft1093_8a-0001 ID=EsuBft1093_8a-0001|Name=EsuBft1093_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=78bp|location=Sequence derived from alignment at Scaffold_133:354470..354912+ (Ectocarpus subulatus male Bft15b)
ATGGTCATGAAGTTCCCTCTGAAGCGCTGGTCGCGGGGGTGCAAAGGTGT
TTTGAAACTACAGGTGTTTTCGGCGTAA
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