EsuBft1093_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1093_7a-0001
Unique NameEsuBft1093_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_133contigScaffold_133:356829..358781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1093_7
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length172
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionimm upregulated 12
Ec32 orthologEc-10_004210.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1093_7aEsuBft1093_7aEctocarpus subulatus male Bft15bgeneScaffold_133 356829..358781 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1093_7a-0001EsuBft1093_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_133 357659..358745 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1093_7a-0001-exonEsuBft1093_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_133 356829..357337 -
EsuBft1093_7a-0001-exonagat-exon-39118Ectocarpus subulatus male Bft15bexonScaffold_133 357436..358380 -
EsuBft1093_7a-0001-exonagat-exon-39119Ectocarpus subulatus male Bft15bexonScaffold_133 358514..358781 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1093_7a-0001-exonagat-three_prime_utr-894Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_133 356829..357337 -
EsuBft1093_7a-0001-exonagat-three_prime_utr-895Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_133 357436..357658 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1093_7a-0001-cdsEsuBft1093_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_133 357659..358380 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1093_7a-0001-exonagat-five_prime_utr-561Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_133 358746..358781 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1093_7a-0001 ID=EsuBft1093_7a-0001|Name=EsuBft1093_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1722bp|location=Sequence derived from alignment at Scaffold_133:356829..358781- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTATCCTTGCCCATCCAACGCTCGCGCAGCAGGTCATGTTTTCCACGCG
AGGGAAGGACGGTTTCGCACGTGTTTGGTATGTGGCCTCGATGATGATGC
TCTTGACCGGCGACAGCTGCCGCGCGACAAAGCACCTTTCGCCTTTTGGC
GGCAAGGTGGCGCCAAGCGTACAGCACCGAGAGCTTCAAGACAGCTGCGG
AGTCTGTGGTACTGAGATAGTCTTGGAGGATGATGACGCGGAGATGAGCT
GCACGATATGCAACGAAGTACTCATTGCTTGCATGGAAGACTACGGGGAA
TCAGAAACCGGTTCCGGTGGCTTTGGCGTTTGTCATCCGTGCGGCGACCT
CTCTGTGGATGAAGTGATCCTCTTCTACGAGGGCATCTGCGGCGACCCTC
TCAGCTCAATCACACAAGATTATATATCGGGCTGCCTCTACTACTTGGTA
CCACCGGAGTGCCCCAGCGACGTGACTACGTCTGACGACGACTACACGAC
TGAATCTAGCGATGATTACTCGACGGACGACGACTACACGACTGAATCTA
GCGATGATTACTCGACGGACGACGACTACACGACTGAATCTAGCGATGAT
TACTCGACGGACGACGACTACACGACTGAATCTAGCGATGATTACTCGAC
GGACGACGACTACACGACTGAATCTAGCGATGATTACTCGACGGACGACG
ACTACACGACTGAATCTAGCGATGATTACTCGACGGACGACGACTACACG
ACTGAATCTAGCGATGATTACTCGACGGATGACGACTACACGATTGAATC
TAGCGATGATTACTCGACGTACGACGACTCGAATGCTTCGCTTATCCCTA
GCTCTTCCACCGACGACGATCCGAGCACGCCGCCTACGACCACCGAAGGC
AACGGTGTCAGGGTTCGCGCGTGCGGGAGCGTCGGCGCCTTGGCGGTTGC
CGTGGTCAATGTTGTATTCTTGTTGGCTGAGTCGCGCTGAAGGCTTGAAT
CTCGATTTCTACAGGAGCAATAGTCTAGCTGAATTGAGGCTGTCGTTAGG
TTCGGTATTCATGTGCAGCCCATGTAGCTTATTTCTCTTGTTTCACACGG
GGCAGTTGGAAAATCGGTTAAAGCTTTGCTCATTTCTGATGCCCGCTGCC
GCCGTTCCTGTGTCATTTGGAGTTGTAGGAGGCCGATCTGCAGTCTACAG
CTTTCTATGTTAGGGAGGAGGGGGGGGGGGGCAACGTCTTCTTTCGAGCG
AAACCAGCGTCGTCGACTGACTGACTGACGTCGATTGCATTCCAAGGTGG
TGGCCTTGAAGCTAAGAATCGTTTTAGATTGACTGTTGGTTTTTGGGCAG
CAGCATCGTTCTCGACGTTCAGACAATAGGAATCTACATTTATGTTCGAA
AAGTCTTGGTGTGCTGGATGGCGGAGAATTTGGGGTATATCGAGGCCCCT
CGATTCTCCGCATGGCGTGCTAATCTGGATTTTCGTTAACAGGCTAATGT
GACACATCGGACCACCTCTGTCTACCGAAACGAGTCAAAGGTAGAATAAC
GAGGATTCCTTGCGGAGGCTGCCTGTATTTCCACGATTGATTCCGGAAAG
AGTTCAGACAAATCTAGCAAAAAATGAATCAAGAGAAAAGAAATGGCGGA
AAAAACAACTTTTCTTATTTGGGGCCCTCCCGGGGTGTGTGTGGGGGGTA
CGTAGGTGTTCGAAGACCAACC
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protein sequence of EsuBft1093_7a-0001

>EsuBft1093_7 ID=EsuBft1093_7|Name=EsuBft1093_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=317bp
MFSTRGKDGFARVWYVASMMMLLTGDSCRATKHLSPFGGKVAPSVQHREL
QDSCGVCGTEIVLEDDDAEMSCTICNEVLIACMEDYGESETGSGGFGVCH
PCGDLSVDEVILFYEGICGDPLSSITQDYISGCLYYLVPPECPSDVTTSD
DDYTTESSDDYSTDDDYTTESSDDYSTDDDYTTESSDDYSTDDDYTTESS
DDYSTDDDYTTESSDDYSTDDDYTTESSDDYSTDDDYTTESSDDYSTDDD
YTIESSDDYSTYDDSNASLIPSSSTDDDPSTPPTTTEGNGVRVRACGSVG
ALAVAVVNVVFLLAESR
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mRNA from alignment at Scaffold_133:356829..358781-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1093_7a-0001 ID=EsuBft1093_7a-0001|Name=EsuBft1093_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1953bp|location=Sequence derived from alignment at Scaffold_133:356829..358781- (Ectocarpus subulatus male Bft15b)
TGTATCCTTGCCCATCCAACGCTCGCGCAGCAGGTCATGTTTTCCACGCG
AGGGAAGGACGGTTTCGCACGTGTTTGGTATGTGGCCTCGATGATGATGC
TCTTGACCGGCGACAGCTGCCGCGCGACAAAGCACCTTTCGCCTTTTGGC
GGCAAGGTGGCGCCAAGCGTACAGCACCGAGAGCTTCAAGACAGCTGCGG
AGTCTGTGGTACTGAGATAGTCTTGGAGGATGATGACGCGGAGATGAGCT
GCACGATATGCAACGAAGGTCGGTCACCAAAATGTCTCCACCGAAGGGCG
AACGAGGATGCCAACTTTGTGTCGCCAGCGAAACACAACTCCTCGCAACA
ACCCGTCGTTCCGTGCTGTCCATGTATCGTTCCGCAACTCGTCCCCTGCA
GTACTCATTGCTTGCATGGAAGACTACGGGGAATCAGAAACCGGTTCCGG
TGGCTTTGGCGTTTGTCATCCGTGCGGCGACCTCTCTGTGGATGAAGTGA
TCCTCTTCTACGAGGGCATCTGCGGCGACCCTCTCAGCTCAATCACACAA
GATTATATATCGGGCTGCCTCTACTACTTGGTACCACCGGAGTGCCCCAG
CGACGTGACTACGTCTGACGACGACTACACGACTGAATCTAGCGATGATT
ACTCGACGGACGACGACTACACGACTGAATCTAGCGATGATTACTCGACG
GACGACGACTACACGACTGAATCTAGCGATGATTACTCGACGGACGACGA
CTACACGACTGAATCTAGCGATGATTACTCGACGGACGACGACTACACGA
CTGAATCTAGCGATGATTACTCGACGGACGACGACTACACGACTGAATCT
AGCGATGATTACTCGACGGACGACGACTACACGACTGAATCTAGCGATGA
TTACTCGACGGATGACGACTACACGATTGAATCTAGCGATGATTACTCGA
CGTACGACGACTCGAATGCTTCGCTTATCCCTAGCTCTTCCACCGACGAC
GATCCGAGCACGCCGCCTACGACCACCGAAGGCAACGGTGTCAGGGTTCG
CGCGTGCGGGAGCGTCGGCGCCTTGGCGGTTGCCGTGGTCAATGTTGTAT
TCTTGTTGGCTGAGTCGCGCTGAAGGCTTGAATCTCGATTTCTACAGGAG
CAATAGTCTAGCTGAATTGAGGCTGTCGTTAGGTTCGGTATTCATGTGCA
GCCCATGTAGCTTATTTCTCTTGTTTCACACGGGGCAGTTGGAAAATCGG
TTAAAGCTTTGCTCATTTCTGATGCCCGCTGCCGCCGTTCCTGTGTCATT
TGGAGTTGTAGGAGGCCGATCTGCAGTCTACAGCTTTCTATGTTAGGTAA
AGTTTTCATGCTTCTCAAGGTTTCTTGAGTTCGGTATGCGCATCATATTT
GACGGTTTGTTGTTCGTTCAATATTGACTGGGTGTGGGAGATAGGGAGGA
GGGGGGGGGGGGCAACGTCTTCTTTCGAGCGAAACCAGCGTCGTCGACTG
ACTGACTGACGTCGATTGCATTCCAAGGTGGTGGCCTTGAAGCTAAGAAT
CGTTTTAGATTGACTGTTGGTTTTTGGGCAGCAGCATCGTTCTCGACGTT
CAGACAATAGGAATCTACATTTATGTTCGAAAAGTCTTGGTGTGCTGGAT
GGCGGAGAATTTGGGGTATATCGAGGCCCCTCGATTCTCCGCATGGCGTG
CTAATCTGGATTTTCGTTAACAGGCTAATGTGACACATCGGACCACCTCT
GTCTACCGAAACGAGTCAAAGGTAGAATAACGAGGATTCCTTGCGGAGGC
TGCCTGTATTTCCACGATTGATTCCGGAAAGAGTTCAGACAAATCTAGCA
AAAAATGAATCAAGAGAAAAGAAATGGCGGAAAAAACAACTTTTCTTATT
TGGGGCCCTCCCGGGGTGTGTGTGGGGGGTACGTAGGTGTTCGAAGACCA
ACC
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Coding sequence (CDS) from alignment at Scaffold_133:356829..358781-

>EsuBft1093_7a-0001 ID=EsuBft1093_7a-0001|Name=EsuBft1093_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=954bp|location=Sequence derived from alignment at Scaffold_133:356829..358781- (Ectocarpus subulatus male Bft15b)
ATGTTTTCCACGCGAGGGAAGGACGGTTTCGCACGTGTTTGGTATGTGGC
CTCGATGATGATGCTCTTGACCGGCGACAGCTGCCGCGCGACAAAGCACC
TTTCGCCTTTTGGCGGCAAGGTGGCGCCAAGCGTACAGCACCGAGAGCTT
CAAGACAGCTGCGGAGTCTGTGGTACTGAGATAGTCTTGGAGGATGATGA
CGCGGAGATGAGCTGCACGATATGCAACGAAGTACTCATTGCTTGCATGG
AAGACTACGGGGAATCAGAAACCGGTTCCGGTGGCTTTGGCGTTTGTCAT
CCGTGCGGCGACCTCTCTGTGGATGAAGTGATCCTCTTCTACGAGGGCAT
CTGCGGCGACCCTCTCAGCTCAATCACACAAGATTATATATCGGGCTGCC
TCTACTACTTGGTACCACCGGAGTGCCCCAGCGACGTGACTACGTCTGAC
GACGACTACACGACTGAATCTAGCGATGATTACTCGACGGACGACGACTA
CACGACTGAATCTAGCGATGATTACTCGACGGACGACGACTACACGACTG
AATCTAGCGATGATTACTCGACGGACGACGACTACACGACTGAATCTAGC
GATGATTACTCGACGGACGACGACTACACGACTGAATCTAGCGATGATTA
CTCGACGGACGACGACTACACGACTGAATCTAGCGATGATTACTCGACGG
ACGACGACTACACGACTGAATCTAGCGATGATTACTCGACGGATGACGAC
TACACGATTGAATCTAGCGATGATTACTCGACGTACGACGACTCGAATGC
TTCGCTTATCCCTAGCTCTTCCACCGACGACGATCCGAGCACGCCGCCTA
CGACCACCGAAGGCAACGGTGTCAGGGTTCGCGCGTGCGGGAGCGTCGGC
GCCTTGGCGGTTGCCGTGGTCAATGTTGTATTCTTGTTGGCTGAGTCGCG
CTGA
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