EsuBft1093_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1093_6a-0001
Unique NameEsuBft1093_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_133contigScaffold_133:365784..368407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1093_6
Protein domainsIPR000571
Protein domainsSSF90229
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length121
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Cross References
External references for this mRNA
DatabaseAccession
GO0046872
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1093_6aEsuBft1093_6aEctocarpus subulatus male Bft15bgeneScaffold_133 365784..368407 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1093_6a-0001EsuBft1093_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_133 365784..367301 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1093_6a-0001-exonagat-exon-39117Ectocarpus subulatus male Bft15bexonScaffold_133 365784..366281 -
EsuBft1093_6a-0001-exonagat-exon-39116Ectocarpus subulatus male Bft15bexonScaffold_133 366386..366521 -
EsuBft1093_6a-0001-exonEsuBft1093_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_133 366841..367343 -
EsuBft1093_6a-0001-exonagat-exon-39115Ectocarpus subulatus male Bft15bexonScaffold_133 368333..368407 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1093_6a-0001-cdsEsuBft1093_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_133 365784..366281 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1093_6a-0001-exonagat-five_prime_utr-559Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_133 367302..367343 -
EsuBft1093_6a-0001-exonagat-five_prime_utr-560Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_133 368333..368407 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1093_6a-0001 ID=EsuBft1093_6a-0001|Name=EsuBft1093_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1212bp|location=Sequence derived from alignment at Scaffold_133:365784..368407- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGAAGACCAAGAATCTGGGCGAAGGAGTCGATCCGCCGTTCTCGGAGAAG
CGTCGACTACTTTGGAGATTGATCGATTGATCGGTGCATCGGCCGCACGT
CGGCCGGGGGCGGAGATATGAGCGGGGACGAGAACACCTCCGACGAGTCT
GTGATTGGCCTCGAAGAGTATGACGCGGAGCGGCAGGACAGCGCTAATGA
GCGGGCCGTCATCAGCGCCTCGGTGGAGGACCTAAAGGCCGACATGGCGG
CGAGGTTCGCGGAGGTGCTAGAAGCTGTGCGTGCTCGGGGCGGCGGTGCC
GCCGCTGGTGACGCTGCCGGAGTTGCACCAGCGCCCATGTATGGGGGCAC
GAGTGCAGCTGCCGGGGTGGCGCCGGCGCCCATGTATGGGGGCGCGAGTG
CGGCTGGTTCCTCGGCCGACTACGGGTTACACCGCGTGGAGTCGAGTCCC
GGGTTGCTGCAGGGCGCTGGTCTGTATGGCAGTGGGGGCGGCTTAGGCTT
CACTCCCGCGATTTCGTTCCCGTTTGGAGCGGGGGGCCTTAACATGGACT
CCGGTGGATACGGGACGGGAACGAGGGTGTTGGAGGCGGCATCGCAAGCG
CGGCTGGATCGTGTCGAAGCCTCGTTCCAGACGGCCATCGACGACGTGGC
GCGGCACGCTCGGGAGAATTACGCGGCCATCCAAGCGCAGCACAACCGAG
ACATCTTCTTTGAGATGTTCGCGGACGAGATGCAGCGGCGCTTCGTTCTG
CCTCCGCCGTCGGAGGGTCTTTCGCCCCCCCCCCTCCCGGGTTTCCCAAA
CATCGCGGCGTATCTCCGGTCGGGAGGGCTGATCAATTCTGCTGTGCAAG
GCAAGTCCGGCCGTTCGTCGGCCGCCGCAGCGGATGCCGGGGGGACGGGC
AGCGCAACCAAGGAGCAGGGGGTGTGCTACAAGTTCCAGAAAGACGGTAA
CTGTCGGTGGGGGAAGAAGTGTAAGTTCGCGCATGTGGCGCCACGGAAGG
CCGGCCGAAAGGGAGGAAAAAGAGGGGGCGCGGCTGGCGGCGGCGCCGAG
GATGGCGACTCGAAAGGTAGCCCCTACACCGCCGCCGACACCAACGCCTC
TGCCGCCGCCGCCCCAGCGAAGGGGGGCAAGGGGGCTACGGCCGTGACGA
TGACTCGCAGCAGTGCGACGGGCGGTGCCGGCGGCGGCGCGAAGGACGAT
GCTGAAGAATAG
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protein sequence of EsuBft1093_6a-0001

>EsuBft1093_6 ID=EsuBft1093_6|Name=EsuBft1093_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=364bp
MSGDENTSDESVIGLEEYDAERQDSANERAVISASVEDLKADMAARFAEV
LEAVRARGGGAAAGDAAGVAPAPMYGGTSAAAGVAPAPMYGGASAAGSSA
DYGLHRVESSPGLLQGAGLYGSGGGLGFTPAISFPFGAGGLNMDSGGYGT
GTRVLEAASQARLDRVEASFQTAIDDVARHARENYAAIQAQHNRDIFFEM
FADEMQRRFVLPPPSEGLSPPPLPGFPNIAAYLRSGGLINSAVQGKSGRS
SAAAADAGGTGSATKEQGVCYKFQKDGNCRWGKKCKFAHVAPRKAGRKGG
KRGGAAGGGAEDGDSKGSPYTAADTNASAAAAPAKGGKGATAVTMTRSSA
TGGAGGGAKDDAEE
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mRNA from alignment at Scaffold_133:365784..368407-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1093_6a-0001 ID=EsuBft1093_6a-0001|Name=EsuBft1093_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2624bp|location=Sequence derived from alignment at Scaffold_133:365784..368407- (Ectocarpus subulatus male Bft15b)
TGAAGACCAAGAATCTGGGCGAAGGAGTCGATCCGCCGTTCTCGGAGAAG
CGTCGACTACTTTGGAGATTGATCGGTGCATCGGCCGCACGTCGGCCGGG
GGCGGAGATATGAGCGGGGACGAGAACACCTCCGACGAGTCTGTGATTGG
CCTCGAAGAGTATGACGCGGAGCGGCAGGACAGCGCTAATGAGCGGGCCG
TCATCAGCGCCTCGGTGGAGGACCTAAAGGCCGACATGGCGGCGAGGTTC
GCGGAGGTGCTAGAAGCTGTGCGTGCTCGGGGCGGCGGTGCCGCCGCTGG
TGACGCTGCCGGAGTTGCACCAGCGCCCATGTATGGGGGCACGAGTGCAG
CTGCCGGGGTGGCGCCGGCGCCCATGTATGGGGGCGCGAGTGCGGCTGGT
TCCTCAGCCGGCTACGGGTTACACCGCGTGGAGTCGAGTCCCGGGTTGCT
GCAGGGCGCTGGTCTGTATGGCAGTGGGGGCGGCTTAGGCTTCACTCCCG
CGATTTCGTTCCCGTTTGGAGCGGGGGGCCTTAACATGGACTCCGGTGGA
TACGGGACGGGAACGAGGGTGTAGCATGCCCAGCGACGGATGGAAAAGGT
AATCTCGGACCAGCGGGTGAACGCTTGGAGCTCGGCGAACAGTCGCATGT
GGTGGGTGATGATGGGATGTTTTCCGCCGAAGCTAGAGAAGCCGAGCCTG
CAAGGGTTAATGTTTGATAGTATTGAGGTCACGGACGTGGTAGCCGACAT
GCTCTTGAACTTCCGTGACGTTGACCCCGCTGCCTTCACGCCCCGGGGGG
CGGGTGGCGACCGTCTCCCCATCTCAACGCATTTGCATGGCGGGGGCTTT
TATTACCATCGCTTGCCGGGGGATCGCCGACGAACCGAGGTTGGAGGCGG
CATCGCAAGCGCGGCTGGATCGTGTCGAAGCCTCGTTCCAGACGGCCATC
GACGACGTGGCGCGGCACGCTCGGGAGAATTACGCGGCCATCCAAGNTGA
AGACCAAGAATCTGGGCGAAGGAGTCGATCCGCCGTTCTCGGAGAAGCGT
CGACTACTTTGGAGATTGATCGGTGCATCGGCCGCACGTCGGCCGGGGGC
GGAGATATGAGCGGGGACGAGAACACCTCCGACGAGTCTGTGATTGGCCT
CGAAGAGTATGACGCGGAGCGGCAGGACAGCGCTAATGAGCGGGCCGTCA
TCAGCGCCTCGGTGGAGGACCTAAAGGCCGACATGGCGGCGAGGTTCGCG
GAGGTGCTAGAAGCTGTGCGTGCTCGGGGCGGCGGTGCCGCCGCTGGTGA
CGCTGCCGGAGTTGCACCAGCGCCCATGTATGGGGGCACGAGTGCAGCTG
CCGGGGTGGCGCCGGCGCCCATGTATGGGGGCGCGAGTGCGGCTGGTTCC
TCGGCCGACTACGGGTTACACCGCGTGGAGTCGAGTCCCGGGTTGCTGCA
GGGCGCTGGTCTGTATGGCAGTGGGGGCGGCTTAGGCTTCACTCCCGCGA
TTTCGTTCCCGTTTGGAGCGGGGGGCCTTAACATGGACTCCGGTGGATAC
GGGACGGGAACGAGGGTGTAGCATGCCCAGCGACGGATGGAAAAGGTAAT
CTCGGACCAGCGGGTGAACGCTTGGAGCTCGGCGAACAGTCGCATGTGGT
GGGTGATGATGGGATGTTTTCCGCCGAAGCTAGAGAAGCCGAGCCTGCAA
GGGTTAATGTTTGATAGTATTGAGGTCACGGACGTGGTAGCCGACATGCT
CTTGAACTTCCGTGACGTTGACCCCGCTGCCTTCACGCCCCGGGGGGCGG
GTGGCGACCGTCTCCCCATCTCAACGCATTTGCATGGCGGGGGCTTTTAT
TACCATCGCTTGCCGGGGGATCGCCGACGAACCGAGGTTGGAGGCGGCAT
CGCAAGCGCGGCTGGATCGTGTCGAAGCCTCGTTCCAGACGGCCATCGAC
GACGTGGCGCGGCACGCTCGGGAGAATTACGCGGCCATCCAAGCGCAGCA
CAACCGAGACATCTTCTTTGAGGTTCGCTCGGGAGAATTACGCGGCCATC
CAAGCGCAGCACAACCGAGACATCTTCTTTGAGTTTCCTCGTCAAAGACG
TGGAAGTGTACACGCGCGACGTGCAGATGTTCGCGGACGAGATGCAGCGG
CGCTTCGTTCTGCCTCCGCCGTCGGAGGGTCTTTCGCCCCCCCCCCTCCC
GGGTTTCCCAAACATCGCGGCGTATCTCCGGTCGGGAGGGCTGATCAATT
CTGCTGTGCAAGGCAAGTCCGGCCGTTCGTCGGCCGCCGCAGCGGATGCC
GGGGGGACGGGCAGCGCAACCAAGGAGCAGGGGGTGTGCTACAAGTTCCA
GAAAGACGGTAACTGTCGGTGGGGGAAGAAGTGTAAGTTCGCGCATGTGG
CGCCACGGAAGGCCGGCCGAAAGGGAGGAAAAAGAGGGGGCGCGGCTGGC
GGCGGCGCCGAGGATGGCGACTCGAAAGGTAGCCCCTACACCGCCGCCGA
CACCAACGCCTCTGCCGCCGCCGCCCCAGCGAAGGGGGGCAAGGGGGCTA
CGGCCGTGACGATGACTCGCAGCAGTGCGACGGGCGGTGCCGGCGGCGGC
GCGAAGGACGATGCTGAAGAATAG
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Coding sequence (CDS) from alignment at Scaffold_133:365784..368407-

>EsuBft1093_6a-0001 ID=EsuBft1093_6a-0001|Name=EsuBft1093_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1095bp|location=Sequence derived from alignment at Scaffold_133:365784..368407- (Ectocarpus subulatus male Bft15b)
ATGAGCGGGGACGAGAACACCTCCGACGAGTCTGTGATTGGCCTCGAAGA
GTATGACGCGGAGCGGCAGGACAGCGCTAATGAGCGGGCCGTCATCAGCG
CCTCGGTGGAGGACCTAAAGGCCGACATGGCGGCGAGGTTCGCGGAGGTG
CTAGAAGCTGTGCGTGCTCGGGGCGGCGGTGCCGCCGCTGGTGACGCTGC
CGGAGTTGCACCAGCGCCCATGTATGGGGGCACGAGTGCAGCTGCCGGGG
TGGCGCCGGCGCCCATGTATGGGGGCGCGAGTGCGGCTGGTTCCTCGGCC
GACTACGGGTTACACCGCGTGGAGTCGAGTCCCGGGTTGCTGCAGGGCGC
TGGTCTGTATGGCAGTGGGGGCGGCTTAGGCTTCACTCCCGCGATTTCGT
TCCCGTTTGGAGCGGGGGGCCTTAACATGGACTCCGGTGGATACGGGACG
GGAACGAGGGTGTTGGAGGCGGCATCGCAAGCGCGGCTGGATCGTGTCGA
AGCCTCGTTCCAGACGGCCATCGACGACGTGGCGCGGCACGCTCGGGAGA
ATTACGCGGCCATCCAAGCGCAGCACAACCGAGACATCTTCTTTGAGATG
TTCGCGGACGAGATGCAGCGGCGCTTCGTTCTGCCTCCGCCGTCGGAGGG
TCTTTCGCCCCCCCCCCTCCCGGGTTTCCCAAACATCGCGGCGTATCTCC
GGTCGGGAGGGCTGATCAATTCTGCTGTGCAAGGCAAGTCCGGCCGTTCG
TCGGCCGCCGCAGCGGATGCCGGGGGGACGGGCAGCGCAACCAAGGAGCA
GGGGGTGTGCTACAAGTTCCAGAAAGACGGTAACTGTCGGTGGGGGAAGA
AGTGTAAGTTCGCGCATGTGGCGCCACGGAAGGCCGGCCGAAAGGGAGGA
AAAAGAGGGGGCGCGGCTGGCGGCGGCGCCGAGGATGGCGACTCGAAAGG
TAGCCCCTACACCGCCGCCGACACCAACGCCTCTGCCGCCGCCGCCCCAG
CGAAGGGGGGCAAGGGGGCTACGGCCGTGACGATGACTCGCAGCAGTGCG
ACGGGCGGTGCCGGCGGCGGCGCGAAGGACGATGCTGAAGAATAG
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