EsuBft1092_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1092_7a-0001
Unique Name	EsuBft1092_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_140	contig	Scaffold_140:44890..47342 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	67593.Physo141588
ProteomeId	EsuBft1092_7
Protein domains	IPR001584
Protein domains	IPR013103
Protein domains	IPR012337
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	copia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon	4
Max annot lvl	4776\|Peronosporales
Length	2271
Hectar predicted targeting category	other localisation
Evalue	1.85e-54
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,3QHJF@4776\|Peronosporales
Date last modified	2016-06-14
Date creation	2016-06-14
Description	gag-polypeptide of LTR copia-type
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0003824
GO	0015074

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1092_7a	EsuBft1092_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_140 44890..47342 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1092_7a-0001-exon	agat-exon-6363	Ectocarpus subulatus male Bft15b	exon	Scaffold_140 44890..45335 +
EsuBft1092_7a-0001-exon	EsuBft1092_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_140 45409..46215 +
EsuBft1092_7a-0001-exon	agat-exon-6361	Ectocarpus subulatus male Bft15b	exon	Scaffold_140 46275..46582 +
EsuBft1092_7a-0001-exon	agat-exon-6362	Ectocarpus subulatus male Bft15b	exon	Scaffold_140 46633..47342 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1092_7a-0001-cds	EsuBft1092_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_140 44890..45335 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1092_7a-0001	EsuBft1092_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_140 44890..47342 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_140:44890..47342+
coding sequence from alignment at Scaffold_140:44890..47342+

spliced messenger RNA

>EsuBft1092_7a-0001 ID=EsuBft1092_7a-0001|Name=EsuBft1092_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2271bp|location=Sequence derived from alignment at Scaffold_140:44890..47342+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGAGGAACTGCTCCAGAAAACGGCGAAACAGCAAGGAGTGCAGCT
GACGGGAGGACCGCTGCTACCATGCCTCGGCTGTTCGATGTCCAAGGGGC
AGGTGAAGCCCATTTCAAAGAGCACGGACACACGCGCAGCTAAAAACTTG
TTCCGCCTTTTTCTCGATTTGAGGGGGAGGATGCAGTTCAAAAGCATTGG
TGGCAACTGGTACACCCTCATCATCCGAGATGATTGCACCCGCTGGACAC
GTGTTTTCTTCATGAAGCACAAGTCTGACGCCGCTGCCGCGTTCGAGCGG
TATCTGGCGGACTACAGAGCAGAAACCGTCCCGTGTGAGGTGTTTGTCGC
ACGTACTGACGGCGGCGGAGAATTCCAGGGCCAGTTTGCGGAGGTCTGCC
GTAGATACGGCATCAAGCAAGAATTCACGCCCCCCAACACCCCCAACAAC
GCCGCCGGCGACGACGACGGCGGCGGCGCCAGCGGCGGTGAGCCCGGCGC
CTCTGGAGATGGCGGTGGCGGCGGCAGTGAACCCGGCGAAGACTCTGAGC
AACTCGAGGAGTACAAGTATGATCCCGCCGACAGCCGCTACCCGCCGGGC
CGCGAAGGGCGTCGGCTCCTCTGGGGCGCCTCGAAGGAAGGACCGCTGCG
CCACGGGCTCGAGCGCGGCCGCACACGAAGGGAGACCCGGGAGCTGCAAG
GCCCCGAGGAGCCGCCGGGTCCAGACGCCGAGCCAGACGCCGAGCAAGCG
CTGCTGGCGGAGATCATCGTGGACTACGTTTCCAACTCGCTGGTGCGGGA
GCGGTACGACGAGGAGCAGGTCAACATCGAGTACCGGCGTGAGATGCATG
AGCTGCCGTACGGCACCGAGCTGCAGGAGGAGGCGTTCGGTGCAGAGGCA
GGGGACGACGGGTCATCGCAACCTCTTCATGACCCGCAGCTAAGTATCCC
CTCGCCCTTCGGCCAGAAGCCAAGTGATGTAGAGTGCGTGCCCTTGACGT
ACAAGGATGTCCTTAACTCCAAGTACAAGGTGCTGTGGGAAGCAGCCATA
GCAAAGGAGTTCGACGGCCACAAGAAGCCGGGGACGTTCTCCGAGATTAG
TGGTCTGCTCGAGGGGCAAAAGGCCATCAGTGCGAAGTGGATTTTCTCGC
ACAAGACCAATGAGAAGGGGCTGATTGTCGACTTCAAAGCACGTATGGTT
GCGCGTGGTGTTTTTCTCAGATTCCCGGTGTGGATTTTCACCACTCATCA
TCCGAGGCCTGTCCACTGTGACATCAACAAGGCGTACACACACGCCAAGC
TGAAGGAAGAAATCTACCTGAGGCTTCCAGACGGTTGTGGTGTTTGGACT
GGCAAGGCGGTGAAAGTCGAGCGTGCTCTGTATGGACTCAAGCAGAATGG
GCGCGAGTGGGGGTTTGAGGCTGCCGATGCCCTGATCTCAAACGGCTACG
AGCAGTGCAGGGTGGACCCCTGCCATTTCCGCAAGGTGGTTGACGGAGAA
GTCGTAGGTCTCATCGTGATCTACGTGGATGACATCATGTTGTCCGCGAC
CGAGGAGGAGCGAGATTGTACCTGGTACGATGGGTGTGCCATTGAGGTGG
ACCTTGAGAATGGTACCACCAAGCTGTCCCAGACGGCTTATATCGAGAGC
ATGCTCAACCGCTTCAATGTCACGACCACTGCTCCCACGCCCGCTGTCGT
CGACGATGACCTAGGGCCGAAGAGAGACGACGAGTCCTCGGTGGACAAGC
CCGTGAGGGAAGCGATCGGATGCCTGATGTGGTTGCTGTTCACGAGGCCG
GACATCGCGCTGCCTTTGAACAAGCTGCAGAAGATCGCCCACTCACCCAC
CGAGAGGATGTGGAACGCGCTTGTGCGGATCATGTCCTACCTCAACGAGA
CGAAGGACCTCGGGATCACCTACGTCCGCGGATCAGGGCTAGACCTAGAC
GTGTTCGTCGATTCTAGTTACGCCGACAGCACCGTTGACAGGCGTTCGAC
GACGGGGCTAGCCGTGACTGTAGGTGGGACCGTTGTGTGCGCATCCACGA
AGACACAGCCAGTGACGGCTCAGTCGACCACGGAGGCAGAGTATATTGCA
GCCGGGGAGGGCGTGAAGGAAGCGTTGTTTGTGCGTGGTGTTCTGTCGTT
CATTGCGCCCGAGACGAGCGATGCCACGATCAGGGTCCGTGAGGACAACG
AGGGGGCTCTCGCGTTGGTGCAGAACCCTACGAGCATGGTAGATCTGCTA
GCAGCACGGGGGGGTACGTAG

protein sequence of EsuBft1092_7a-0001

>EsuBft1092_7 ID=EsuBft1092_7|Name=EsuBft1092_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=756bp
MLEELLQKTAKQQGVQLTGGPLLPCLGCSMSKGQVKPISKSTDTRAAKNL
FRLFLDLRGRMQFKSIGGNWYTLIIRDDCTRWTRVFFMKHKSDAAAAFER
YLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRYGIKQEFTPPNTPNN
AAGDDDGGGASGGEPGASGDGGGGGSEPGEDSEQLEEYKYDPADSRYPPG
REGRRLLWGASKEGPLRHGLERGRTRRETRELQGPEEPPGPDAEPDAEQA
LLAEIIVDYVSNSLVRERYDEEQVNIEYRREMHELPYGTELQEEAFGAEA
GDDGSSQPLHDPQLSIPSPFGQKPSDVECVPLTYKDVLNSKYKVLWEAAI
AKEFDGHKKPGTFSEISGLLEGQKAISAKWIFSHKTNEKGLIVDFKARMV
ARGVFLRFPVWIFTTHHPRPVHCDINKAYTHAKLKEEIYLRLPDGCGVWT
GKAVKVERALYGLKQNGREWGFEAADALISNGYEQCRVDPCHFRKVVDGE
VVGLIVIYVDDIMLSATEEERDCTWYDGCAIEVDLENGTTKLSQTAYIES
MLNRFNVTTTAPTPAVVDDDLGPKRDDESSVDKPVREAIGCLMWLLFTRP
DIALPLNKLQKIAHSPTERMWNALVRIMSYLNETKDLGITYVRGSGLDLD
VFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIA
AGEGVKEALFVRGVLSFIAPETSDATIRVREDNEGALALVQNPTSMVDLL
AARGGT

mRNA from alignment at Scaffold_140:44890..47342+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1092_7a-0001 ID=EsuBft1092_7a-0001|Name=EsuBft1092_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2453bp|location=Sequence derived from alignment at Scaffold_140:44890..47342+ (Ectocarpus subulatus male Bft15b)
ATGCTCGAGGAACTGCTCCAGAAAACGGCGAAACAGCAAGGAGTGCAGCT
GACGGGAGGACCGCTGCTACCATGCCTCGGCTGTTCGATGTCCAAGGGGC
AGGTGAAGCCCATTTCAAAGAGCACGGACACACGCGCAGCTAAAAACTTG
TTCCGCCTTTTTCTCGATTTGAGGGGGAGGATGCAGTTCAAAAGCATTGG
TGGCAACTGGTACACCCTCATCATCCGAGATGATTGCACCCGCTGGACAC
GTGTTTTCTTCATGAAGCACAAGTCTGACGCCGCTGCCGCGTTCGAGCGG
TATCTGGCGGACTACAGAGCAGAAACCGTCCCGTGTGAGGTGTTTGTCGC
ACGTACTGACGGCGGCGGAGAATTCCAGGGCCAGTTTGCGGAGGTCTGCC
GTAGATACGGCATCAAGCAAGAATTCACGCCCCCCAACACCCCCAAGTAC
AACGGTGTAGCGGAACGAGCGTNGCAGCAGCAGCAGCAGCAGCAGCAGCA
ACAGCGACAGCAGCAGCAGCAACGCCGCCGGCGACGACGACGGCGGCGGC
GCCAGCGGCGGTGAGCCCGGCGCCTCTGGAGATGGCGGTGGCGGCGGCAG
TGAACCCGGCGAAGACTCTGAGCAACTCGAGGAGTACAAGTATGATCCCG
CCGACAGCCGCTACCCGCCGGGCCGCGAAGGGCGTCGGCTCCTCTGGGGC
GCCTCGAAGGAAGGACCGCTGCGCCACGGGCTCGAGCGCGGCCGCACACG
AAGGGAGACCCGGGAGCTGCAAGGCCCCGAGGAGCCGCCGGGTCCAGACG
CCGAGCCAGACGCCGAGCAAGCGCTGCTGGCGGAGATCATCGTGGACTAC
GTTTCCAACTCGCTGGTGCGGGAGCGGTACGACGAGGAGCAGGTCAACAT
CGAGTACCGGCGTGAGATGCATGAGCTGCCGTACGGCACCGAGCTGCAGG
AGGAGGCGTTCGGTGCAGAGGCAGGGGACGACGGGTCATCGCAACCTCTT
CATGACCCGCAGCTAAGTATCCCCTCGCCCTTCGGCCAGAAGCCAAGTGA
TGTAGAGTGCGTGCCCTTGACGTACAAGGATGTCCTTAACTCCAAGTACA
AGGTGCTGTGGGAAGCAGCCATAGCAAAGGAGTTCGACGGCCACAAGAAG
CCGGGGACGTTCTCCGAGATTAGTGGTCTGCTCGAGGGGCAAAAGGCCAT
CAGTGCGAAGTGGATTTTCTCGCACAAGACCAATGAGAAGGGGCTGATTG
TCGACTTCAAAGCACGTATGGTTGCGCGTGGTGTTTTTCTCAGATTCCCG
GTGTGGATTTTCACCACTCATCATCCGTATGCCCTTCCGCGGTGTCCATC
AAAACTATGGTGGCCGTATCCACCGAGAATGGTAGGAGGCCTGTCCACTG
TGACATCAACAAGGCGTACACACACGCCAAGCTGAAGGAAGAAATCTACC
TGAGGCTTCCAGACGGTTGTGGTGTTTGGACTGGCAAGGCGGTGAAAGTC
GAGCGTGCTCTGTATGGACTCAAGCAGAATGGGCGCGAGTGGGGGTTTGA
GGCTGCCGATGCCCTGATCTCAAACGGCTACGAGCAGTGCAGGGTGGACC
CCTGCCATTTCCGCAAGGTGGTTGACGGAGAAGTCGTAGGTCTCATCGTG
ATCTACGTGGATGACATCATGTTGTCCGCGACCGAGGAGGAGCGTGAAGA
GTTGCTAGCGTCTCTCCAGAAGAGACTCCCTTGAAGGATCTAGGAGATTG
TACCTGGTACGATGGGTGTGCCATTGAGGTGGACCTTGAGAATGGTACCA
CCAAGCTGTCCCAGACGGCTTATATCGAGAGCATGCTCAACCGCTTCAAT
GTCACGACCACTGCTCCCACGCCCGCTGTCGTCGACGATGACCTAGGGCC
GAAGAGAGACGACGAGTCCTCGGTGGACAAGCCCGTGAGGGAAGCGATCG
GATGCCTGATGTGGTTGCTGTTCACGAGGCCGGACATCGCGCTGCCTTTG
AACAAGCTGCAGAAGATCGCCCACTCACCCACCGAGAGGATGTGGAACGC
GCTTGTGCGGATCATGTCCTACCTCAACGAGACGAAGGACCTCGGGATCA
CCTACGTCCGCGGATCAGGGCTAGACCTAGACGTGTTCGTCGATTCTAGT
TACGCCGACAGCACCGTTGACAGGCGTTCGACGACGGGGCTAGCCGTGAC
TGTAGGTGGGACCGTTGTGTGCGCATCCACGAAGACACAGCCAGTGACGG
CTCAGTCGACCACGGAGGCAGAGTATATTGCAGCCGGGGAGGGCGTGAAG
GAAGCGTTGTTTGTGCGTGGTGTTCTGTCGTTCATTGCGCCCGAGACGAG
CGATGCCACGATCAGGGTCCGTGAGGACAACGAGGGGGCTCTCGCGTTGG
TGCAGAACCCTACGAGCATGGTAGATCTGCTAGCAGCACGGGGGGGTACG
TAG

Coding sequence (CDS) from alignment at Scaffold_140:44890..47342+

>EsuBft1092_7a-0001 ID=EsuBft1092_7a-0001|Name=EsuBft1092_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2271bp|location=Sequence derived from alignment at Scaffold_140:44890..47342+ (Ectocarpus subulatus male Bft15b)
ATGCTCGAGGAACTGCTCCAGAAAACGGCGAAACAGCAAGGAGTGCAGCT
GACGGGAGGACCGCTGCTACCATGCCTCGGCTGTTCGATGTCCAAGGGGC
AGGTGAAGCCCATTTCAAAGAGCACGGACACACGCGCAGCTAAAAACTTG
TTCCGCCTTTTTCTCGATTTGAGGGGGAGGATGCAGTTCAAAAGCATTGG
TGGCAACTGGTACACCCTCATCATCCGAGATGATTGCACCCGCTGGACAC
GTGTTTTCTTCATGAAGCACAAGTCTGACGCCGCTGCCGCGTTCGAGCGG
TATCTGGCGGACTACAGAGCAGAAACCGTCCCGTGTGAGGTGTTTGTCGC
ACGTACTGACGGCGGCGGAGAATTCCAGGGCCAGTTTGCGGAGGTCTGCC
GTAGATACGGCATCAAGCAAGAATTCACGCCCCCCAACACCCCCAACAAC
GCCGCCGGCGACGACGACGGCGGCGGCGCCAGCGGCGGTGAGCCCGGCGC
CTCTGGAGATGGCGGTGGCGGCGGCAGTGAACCCGGCGAAGACTCTGAGC
AACTCGAGGAGTACAAGTATGATCCCGCCGACAGCCGCTACCCGCCGGGC
CGCGAAGGGCGTCGGCTCCTCTGGGGCGCCTCGAAGGAAGGACCGCTGCG
CCACGGGCTCGAGCGCGGCCGCACACGAAGGGAGACCCGGGAGCTGCAAG
GCCCCGAGGAGCCGCCGGGTCCAGACGCCGAGCCAGACGCCGAGCAAGCG
CTGCTGGCGGAGATCATCGTGGACTACGTTTCCAACTCGCTGGTGCGGGA
GCGGTACGACGAGGAGCAGGTCAACATCGAGTACCGGCGTGAGATGCATG
AGCTGCCGTACGGCACCGAGCTGCAGGAGGAGGCGTTCGGTGCAGAGGCA
GGGGACGACGGGTCATCGCAACCTCTTCATGACCCGCAGCTAAGTATCCC
CTCGCCCTTCGGCCAGAAGCCAAGTGATGTAGAGTGCGTGCCCTTGACGT
ACAAGGATGTCCTTAACTCCAAGTACAAGGTGCTGTGGGAAGCAGCCATA
GCAAAGGAGTTCGACGGCCACAAGAAGCCGGGGACGTTCTCCGAGATTAG
TGGTCTGCTCGAGGGGCAAAAGGCCATCAGTGCGAAGTGGATTTTCTCGC
ACAAGACCAATGAGAAGGGGCTGATTGTCGACTTCAAAGCACGTATGGTT
GCGCGTGGTGTTTTTCTCAGATTCCCGGTGTGGATTTTCACCACTCATCA
TCCGAGGCCTGTCCACTGTGACATCAACAAGGCGTACACACACGCCAAGC
TGAAGGAAGAAATCTACCTGAGGCTTCCAGACGGTTGTGGTGTTTGGACT
GGCAAGGCGGTGAAAGTCGAGCGTGCTCTGTATGGACTCAAGCAGAATGG
GCGCGAGTGGGGGTTTGAGGCTGCCGATGCCCTGATCTCAAACGGCTACG
AGCAGTGCAGGGTGGACCCCTGCCATTTCCGCAAGGTGGTTGACGGAGAA
GTCGTAGGTCTCATCGTGATCTACGTGGATGACATCATGTTGTCCGCGAC
CGAGGAGGAGCGAGATTGTACCTGGTACGATGGGTGTGCCATTGAGGTGG
ACCTTGAGAATGGTACCACCAAGCTGTCCCAGACGGCTTATATCGAGAGC
ATGCTCAACCGCTTCAATGTCACGACCACTGCTCCCACGCCCGCTGTCGT
CGACGATGACCTAGGGCCGAAGAGAGACGACGAGTCCTCGGTGGACAAGC
CCGTGAGGGAAGCGATCGGATGCCTGATGTGGTTGCTGTTCACGAGGCCG
GACATCGCGCTGCCTTTGAACAAGCTGCAGAAGATCGCCCACTCACCCAC
CGAGAGGATGTGGAACGCGCTTGTGCGGATCATGTCCTACCTCAACGAGA
CGAAGGACCTCGGGATCACCTACGTCCGCGGATCAGGGCTAGACCTAGAC
GTGTTCGTCGATTCTAGTTACGCCGACAGCACCGTTGACAGGCGTTCGAC
GACGGGGCTAGCCGTGACTGTAGGTGGGACCGTTGTGTGCGCATCCACGA
AGACACAGCCAGTGACGGCTCAGTCGACCACGGAGGCAGAGTATATTGCA
GCCGGGGAGGGCGTGAAGGAAGCGTTGTTTGTGCGTGGTGTTCTGTCGTT
CATTGCGCCCGAGACGAGCGATGCCACGATCAGGGTCCGTGAGGACAACG
AGGGGGCTCTCGCGTTGGTGCAGAACCCTACGAGCATGGTAGATCTGCTA
GCAGCACGGGGGGGTACGTAG