EsuBft1092_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1092_5a-0001
Unique NameEsuBft1092_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_140contigScaffold_140:54820..56021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1092_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length80
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1092_5aEsuBft1092_5aEctocarpus subulatus male Bft15bgeneScaffold_140 54820..56021 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1092_5a-0001EsuBft1092_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_140 54820..55501 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1092_5a-0001-exonagat-exon-6357Ectocarpus subulatus male Bft15bexonScaffold_140 54820..54828 +
EsuBft1092_5a-0001-exonEsuBft1092_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_140 55082..55634 +
EsuBft1092_5a-0001-exonagat-exon-6358Ectocarpus subulatus male Bft15bexonScaffold_140 55778..56021 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1092_5a-0001-cdsEsuBft1092_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_140 54820..54828 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1092_5a-0001-exonagat-three_prime_utr-888Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_140 55502..55634 +
EsuBft1092_5a-0001-exonagat-three_prime_utr-889Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_140 55778..56021 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1092_5a-0001 ID=EsuBft1092_5a-0001|Name=EsuBft1092_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=806bp|location=Sequence derived from alignment at Scaffold_140:54820..56021+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGTGACNAACATCGGCCGCGTTGCGTATACGACCGTGCTGGCCGC
GGTGGCTGGAGCTGGGGAGCACACTTGCAGCCCTACCGATCCGTGCAACC
CCGCAGAGCGGTGCCCTCCCGCTGAGCCGCAGGGTGGCGTGAGCTTCGCC
CAGCGAGCGGAGAGCCTTGGGGTGAGGGAGAAAACGTTCCGCGCGGCGCA
TGTCCGGATGCACCATACCGACCATACTATCCCCCCGCCGCAAGCTCTGG
AAGAGGGGCGCTACTACTGCTGGACTACACGCAAGACGAGGAGCGACGCG
ACGGACGAACGTGTGCTGGAGTTAGCGATCCGGTTCTGGCACTGCGACGA
CGTCTCGCGTGCATCGATCGGGCGATTCACCAGTTCATGGGGGCGGAGAA
CCAGGACCAAAGGCTTAGAAGTAGCCTAGGGGTGGAACCAGCAGATAGTA
GAGTCGTGGTAGCGGCAGGGGATGAACACGCGAACCCTGGCCCCGAAGTA
GTCGGACCAGCCCCGCGCCCCGAAAAGGTTAGGAGAAAATACACGTGCCG
TGTTCGCAGGGCTCGGTAGCATTTTGAGTGCCTCACTTGGTCGTATTAAT
TTATTTTGATCTCGTTCGTGGTCATTGCTGGTGGTGGTGGTGGTGCTGCT
GCTGCTGCTGTTTTGTGTTGTGTTGTTGTGTAAAGCATGCTGTGAGTTGT
TATATGCCGCCAGTGACAGTGCTGTTTCGTTGTCGTTGAGGAAACTAACG
GAGAAACCGGATTGTGCTCTTCGGGTGTTTTTACCGTCAAAAACAACTAC
ACTTCA
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protein sequence of EsuBft1092_5a-0001

>EsuBft1092_5 ID=EsuBft1092_5|Name=EsuBft1092_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=142bp
MFVTNIGRVAYTTVLAAVAGAGEHTCSPTDPCNPAERCPPAEPQGGVSFA
QRAESLGVREKTFRAAHVRMHHTDHTIPPPQALEEGRYYCWTTRKTRSDA
TDERVLELAIRFWHCDDVSRASIGRFTSSWGRRTRTKGLEVA
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mRNA from alignment at Scaffold_140:54820..56021+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1092_5a-0001 ID=EsuBft1092_5a-0001|Name=EsuBft1092_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1202bp|location=Sequence derived from alignment at Scaffold_140:54820..56021+ (Ectocarpus subulatus male Bft15b)
ATGTTTGTGGTACATCTCCCTCCGTCCTCGAAAAATCACTATGACTGCCT
GCAACAGCGGGTCGAGAAGCGCCGCGCTGATGTGCTCGAGATGGTGCGGA
AGGATCCCGTGTTGGAGGAGGAGATGAGGACAATGCTGGGGGTGCAAGGG
TTGGAGGGCGTAGCCGCAGTTCACGCGGAAAACACTCGCGCGATGGCCGC
TTCGTTGGCCGCGTTAAAGGGAAAAAGCTAGAGTAACATCGGCCGCGTTG
CGTATATACTAGACNAACATCGGCCGCGTTGCGTATACGACCGTGCTGGC
CGCGGTGGCTGGAGCTGGGGAGCACACTTGCAGCCCTACCGATCCGTGCA
ACCCCGCAGAGCGGTGCCCTCCCGCTGAGCCGCAGGGTGGCGTGAGCTTC
GCCCAGCGAGCGGAGAGCCTTGGGGTGAGGGAGAAAACGTTCCGCGCGGC
GCATGTCCGGATGCACCATACCGACCATACTATCCCCCCGCCGCAAGCTC
TGGAAGAGGGGCGCTACTACTGCTGGACTACACGCAAGACGAGGAGCGAC
GCGACGGACGAACGTGTGCTGGAGTTAGCGATCCGGTTCTGGCACTGCGA
CGACGTCTCGCGTGCATCGATCGGGCGATTCACCAGTTCATGGGGGCGGA
GAACCAGGACCAAAGGCTTAGAAGTAGCCTAGGGGTGGAACCAGCAGATA
GTAGAGTCGTGGTAGCGGCAGGGGATGAACACGCGAACCCTGGCCCCGAA
GTAGTCGGACCAGCCCCGCGCCCCGAAAAGGTTAGGAGAAAATACACGTG
CCGTGTTCGCAGGGCGTCGTGTTACTGTTCTAAGTGCAGGGTAGGAGCGT
ACCCGGACTGCATGGTGGCAAAGAACTACCCCGAGATCGTTGGCAAGGTA
CACGAGAAATCGGGAAAGGAGAGAGTAGTGGTTCTTGCTGCCGACAGTTG
AGCAAAAGTCGGTAGCATTTTGAGTGCCTCACTTGGTCGTATTAATTTAT
TTTGATCTCGTTCGTGGTCATTGCTGGTGGTGGTGGTGGTGCTGCTGCTG
CTGCTGTTTTGTGTTGTGTTGTTGTGTAAAGCATGCTGTGAGTTGTTATA
TGCCGCCAGTGACAGTGCTGTTTCGTTGTCGTTGAGGAAACTAACGGAGA
AACCGGATTGTGCTCTTCGGGTGTTTTTACCGTCAAAAACAACTACACTT
CA
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Coding sequence (CDS) from alignment at Scaffold_140:54820..56021+

>EsuBft1092_5a-0001 ID=EsuBft1092_5a-0001|Name=EsuBft1092_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=429bp|location=Sequence derived from alignment at Scaffold_140:54820..56021+ (Ectocarpus subulatus male Bft15b)
ATGTTTGTGACNAACATCGGCCGCGTTGCGTATACGACCGTGCTGGCCGC
GGTGGCTGGAGCTGGGGAGCACACTTGCAGCCCTACCGATCCGTGCAACC
CCGCAGAGCGGTGCCCTCCCGCTGAGCCGCAGGGTGGCGTGAGCTTCGCC
CAGCGAGCGGAGAGCCTTGGGGTGAGGGAGAAAACGTTCCGCGCGGCGCA
TGTCCGGATGCACCATACCGACCATACTATCCCCCCGCCGCAAGCTCTGG
AAGAGGGGCGCTACTACTGCTGGACTACACGCAAGACGAGGAGCGACGCG
ACGGACGAACGTGTGCTGGAGTTAGCGATCCGGTTCTGGCACTGCGACGA
CGTCTCGCGTGCATCGATCGGGCGATTCACCAGTTCATGGGGGCGGAGAA
CCAGGACCAAAGGCTTAGAAGTAGCCTAG
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