EsuBft1091_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1091_5a-0001
Unique NameEsuBft1091_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_478contigScaffold_478:314324..315755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FU89
ProteomeIdEsuBft1091_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length133
Hectar predicted targeting categoryno signal peptide or anchor
Evalue1.7e-17
EggNOG OGsCOG0474@1|root,KOG0206@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K01530,ko:K14802
KEGG TC3.A.3.8
EC3.6.3.1
Descriptionphospholipid-translocating ATPase activity
COG categoryP
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1091_5aEsuBft1091_5aEctocarpus subulatus male Bft15bgeneScaffold_478 314324..315755 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1091_5a-0001-exonagat-exon-82736Ectocarpus subulatus male Bft15bexonScaffold_478 314324..314436 +
EsuBft1091_5a-0001-exonEsuBft1091_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_478 314536..315755 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1091_5a-0001-cdsEsuBft1091_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_478 314324..314436 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1091_5a-0001-exonagat-three_prime_utr-882Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_478 314597..315755 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1091_5a-0001EsuBft1091_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_478 314324..314596 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1091_5a-0001 ID=EsuBft1091_5a-0001|Name=EsuBft1091_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1333bp|location=Sequence derived from alignment at Scaffold_478:314324..315755+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACAGCGGCTGTGGAGGACACTCAGAGGGCGACAGAACCCCTTGCC
GTCGGCAAACCCCAAGAACTGGCCCGAGCCTACCATCGAGGATGTCCTAG
AGCGGCCGACCAGAATCTCTCTCAAAATAATGCAGAAGTCGGGTTCGGCG
GCACTGTCAAAAAATCTCTCGTAGATATAGCAGAATCGAGATCGACCGTA
CTGTCAGAATCGCTCGTAAGATAAAAGCGGAATCTTGGTTAGGCGATACT
GTTTGAATCTCTGGTATGGTCCATCCAAGACAATTTGTCCGATGACGAGT
CCGGCATTTAGGTGCACATTTCTCTGCACACAGGTGGTTGTTCCGAGTTC
CGAAAGTACCGGCAAACGCCCTGTTTCCAGGCGCATCGATCTACGGAAAG
CGATTTTTATTTTTGTGTTCCGCTTCTTCGTTATTTCCAAATATCCCGAA
TTATTGGCTTGGTTTTTCCTGGGGTGTGTTTTTCTCAGAGCACAATTCTG
AGACCGGATTTCGATAGCTCTCGAAAATCCCCAGGTGGTTTTTTTTTTCC
GATTTCGATTTGAGGGAAAAAAAAAGTTATGGACGAAAAACTAGATCTGG
GGTCCCATTCGGCTTGGTTTTTCGTGCGATATTCAACCGTACTATTTTAA
AATAGACCGCGGCAATCGATTCCTCTCGAAAATCCCCAGGTGTTTTTTTT
TTTCGATTGTCGAAAAAAACTCCCGTTCTCGAGATATTTGTATTTTGTTT
GGCCGCCCAGCAAGCGGGGAGGAGTTTTCCCCCGTGGCTACGCGAGCCCC
CACCCAGCTTGTGCGCAGGGCGCAACCCACCCCCACACGCTCTGCAACGG
TGCTCAGCACCCAAATTCGTCATGGGTCGGCGGAATAAGCGCCGCCGCAC
ACCTCAAAGGGGAAGCGGCGGCCAATTCCAGCGCCGTGAGTGCTCTGCGT
CAGCTGCCGATCCACCAACCCCCGATGACAGCACCCTCTCTACCATGGAA
GTCGATGACGACCAAGACCGCGACGAGGACTATCGCGACGAGAGCACTGG
TGCCTCCTCAGGTAGTGGACAGGCCACGCTGTCTTTCGTAGGGTCTGCTG
ATGCATGCGTCATGTCCGCAGCAGTTCGAACGGCAGAGACTGCTGTGTGT
CCAGAGGTTGGGCCGCCTCGGAGTGCGGCGCAACCTCACCGCTCAAAAAT
CGCCCGGCGCAAGAAGGCAGGGAAGTCGAAGGAGGCGAAAAAGGAAGCAG
AGAGGGAGGCGCTAGCGGCCGAGCGGGAGATGAGGTGTAAGGCCATCCTA
AGGGCGAACGAGGTCTTCACGGCGTGGAAGAGG
back to top

protein sequence of EsuBft1091_5a-0001

>EsuBft1091_5 ID=EsuBft1091_5|Name=EsuBft1091_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=57bp
MAQRLWRTLRGRQNPLPSANPKNWPEPTIEDVLERPTRISLKIMQKSGSA
ALSKNLS
back to top

mRNA from alignment at Scaffold_478:314324..315755+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1091_5a-0001 ID=EsuBft1091_5a-0001|Name=EsuBft1091_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1432bp|location=Sequence derived from alignment at Scaffold_478:314324..315755+ (Ectocarpus subulatus male Bft15b)
ATGGCACAGCGGCTGTGGAGGACACTCAGAGGGCGACAGAACCCCTTGCC
GTCGGCAAACCCCAAGAACTGGCCCGAGCCTACCATCGAGGATGTCCTAG
AGCGGCCGACCAGGTGACCGTAGAGTACATAGTGATGCGCGGCGTGATGT
TCGGGGGCAAGGTCAGAACCTCCCTAACCTTATGCTGATGTTGGGATCGG
CGATACTGACAGAATCTCTCTCAAAATAATGCAGAAGTCGGGTTCGGCGG
CACTGTCAAAAAATCTCTCGTAGATATAGCAGAATCGAGATCGACCGTAC
TGTCAGAATCGCTCGTAAGATAAAAGCGGAATCTTGGTTAGGCGATACTG
TTTGAATCTCTGGTATGGTCCATCCAAGACAATTTGTCCGATGACGAGTC
CGGCATTTAGGTGCACATTTCTCTGCACACAGGTGGTTGTTCCGAGTTCC
GAAAGTACCGGCAAACGCCCTGTTTCCAGGCGCATCGATCTACGGAAAGC
GATTTTTATTTTTGTGTTCCGCTTCTTCGTTATTTCCAAATATCCCGAAT
TATTGGCTTGGTTTTTCCTGGGGTGTGTTTTTCTCAGAGCACAATTCTGA
GACCGGATTTCGATAGCTCTCGAAAATCCCCAGGTGGTTTTTTTTTTCCG
ATTTCGATTTGAGGGAAAAAAAAAGTTATGGACGAAAAACTAGATCTGGG
GTCCCATTCGGCTTGGTTTTTCGTGCGATATTCAACCGTACTATTTTAAA
ATAGACCGCGGCAATCGATTCCTCTCGAAAATCCCCAGGTGTTTTTTTTT
TTCGATTGTCGAAAAAAACTCCCGTTCTCGAGATATTTGTATTTTGTTTG
GCCGCCCAGCAAGCGGGGAGGAGTTTTCCCCCGTGGCTACGCGAGCCCCC
ACCCAGCTTGTGCGCAGGGCGCAACCCACCCCCACACGCTCTGCAACGGT
GCTCAGCACCCAAATTCGTCATGGGTCGGCGGAATAAGCGCCGCCGCACA
CCTCAAAGGGGAAGCGGCGGCCAATTCCAGCGCCGTGAGTGCTCTGCGTC
AGCTGCCGATCCACCAACCCCCGATGACAGCACCCTCTCTACCATGGAAG
TCGATGACGACCAAGACCGCGACGAGGACTATCGCGACGAGAGCACTGGT
GCCTCCTCAGGTAGTGGACAGGCCACGCTGTCTTTCGTAGGGTCTGCTGA
TGCATGCGTCATGTCCGCAGCAGTTCGAACGGCAGAGACTGCTGTGTGTC
CAGAGGTTGGGCCGCCTCGGAGTGCGGCGCAACCTCACCGCTCAAAAATC
GCCCGGCGCAAGAAGGCAGGGAAGTCGAAGGAGGCGAAAAAGGAAGCAGA
GAGGGAGGCGCTAGCGGCCGAGCGGGAGATGAGGTGTAAGGCCATCCTAA
GGGCGAACGAGGTCTTCACGGCGTGGAAGAGG
back to top

Coding sequence (CDS) from alignment at Scaffold_478:314324..315755+

>EsuBft1091_5a-0001 ID=EsuBft1091_5a-0001|Name=EsuBft1091_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=174bp|location=Sequence derived from alignment at Scaffold_478:314324..315755+ (Ectocarpus subulatus male Bft15b)
ATGGCACAGCGGCTGTGGAGGACACTCAGAGGGCGACAGAACCCCTTGCC
GTCGGCAAACCCCAAGAACTGGCCCGAGCCTACCATCGAGGATGTCCTAG
AGCGGCCGACCAGAATCTCTCTCAAAATAATGCAGAAGTCGGGTTCGGCG
GCACTGTCAAAAAATCTCTCGTAG
back to top