EsuBft1091_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1091_3a-0001
Unique NameEsuBft1091_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_478contigScaffold_478:367581..368097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1091_3
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsTMhelix
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length51
Hectar predicted targeting categorymitochondrion
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1091_3aEsuBft1091_3aEctocarpus subulatus male Bft15bgeneScaffold_478 367581..368097 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1091_3a-0001-exonEsuBft1091_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_478 367581..368097 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1091_3a-0001-exonagat-five_prime_utr-554Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_478 367581..367685 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1091_3a-0001-cdsEsuBft1091_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_478 367686..367949 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1091_3a-0001-exonagat-three_prime_utr-880Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_478 367950..368097 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1091_3a-0001EsuBft1091_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_478 367686..367949 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1091_3a-0001 ID=EsuBft1091_3a-0001|Name=EsuBft1091_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=517bp|location=Sequence derived from alignment at Scaffold_478:367581..368097+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTATCCGCGCCATCTCTGCCGCGTCTCTCTACAAAACCAGTGACGTCAT
CACACACCCAACACATGTATTCAGGAAAAAAACGGAGAAATAATTAACAC
AAGCGATGTTTGTCCGTGCGCCACGGTTCGATGCCGTCCGCCTGCTCCGG
TGCCGCTGCTCCGGTGCCGCTGCTCCGGTGCCGCTGTGGCCAGTCCTAGC
ACGACCAAACTCGACCCGCTCCGCTTCGTACACGCTCTCGTTGCTGTCCA
TCCCAGTCGGTTCCTCGCTTTCTCCCTCGTTGCACTTAGGGTTCTTGGTC
CGAAGATTCTCGCGTCGAAGGATCAACCAGCCCAAACAGCTCGTCAACAC
CTGTCCCCTCCTCCTTTGATGGCAAAACCAGGTTACTGAGACAGTACAGC
TGCCTCTAGCAAACCTAGGGCCGTGTACATAGTGCCCGTCCATCTTTCTG
ATGACGTCTGCCTCCGCGCACAACGATGAGATGGGCATTGTTGCCTACAC
CGACGGCCTGGAGGCCC
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protein sequence of EsuBft1091_3a-0001

>EsuBft1091_3 ID=EsuBft1091_3|Name=EsuBft1091_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=87bp
MFVRAPRFDAVRLLRCRCSGAAAPVPLWPVLARPNSTRSASYTLSLLSIP
VGSSLSPSLHLGFLVRRFSRRRINQPKQLVNTCPLLL
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mRNA from alignment at Scaffold_478:367581..368097+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1091_3a-0001 ID=EsuBft1091_3a-0001|Name=EsuBft1091_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=517bp|location=Sequence derived from alignment at Scaffold_478:367581..368097+ (Ectocarpus subulatus male Bft15b)
GTTATCCGCGCCATCTCTGCCGCGTCTCTCTACAAAACCAGTGACGTCAT
CACACACCCAACACATGTATTCAGGAAAAAAACGGAGAAATAATTAACAC
AAGCGATGTTTGTCCGTGCGCCACGGTTCGATGCCGTCCGCCTGCTCCGG
TGCCGCTGCTCCGGTGCCGCTGCTCCGGTGCCGCTGTGGCCAGTCCTAGC
ACGACCAAACTCGACCCGCTCCGCTTCGTACACGCTCTCGTTGCTGTCCA
TCCCAGTCGGTTCCTCGCTTTCTCCCTCGTTGCACTTAGGGTTCTTGGTC
CGAAGATTCTCGCGTCGAAGGATCAACCAGCCCAAACAGCTCGTCAACAC
CTGTCCCCTCCTCCTTTGATGGCAAAACCAGGTTACTGAGACAGTACAGC
TGCCTCTAGCAAACCTAGGGCCGTGTACATAGTGCCCGTCCATCTTTCTG
ATGACGTCTGCCTCCGCGCACAACGATGAGATGGGCATTGTTGCCTACAC
CGACGGCCTGGAGGCCC
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Coding sequence (CDS) from alignment at Scaffold_478:367581..368097+

>EsuBft1091_3a-0001 ID=EsuBft1091_3a-0001|Name=EsuBft1091_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=264bp|location=Sequence derived from alignment at Scaffold_478:367581..368097+ (Ectocarpus subulatus male Bft15b)
ATGTTTGTCCGTGCGCCACGGTTCGATGCCGTCCGCCTGCTCCGGTGCCG
CTGCTCCGGTGCCGCTGCTCCGGTGCCGCTGTGGCCAGTCCTAGCACGAC
CAAACTCGACCCGCTCCGCTTCGTACACGCTCTCGTTGCTGTCCATCCCA
GTCGGTTCCTCGCTTTCTCCCTCGTTGCACTTAGGGTTCTTGGTCCGAAG
ATTCTCGCGTCGAAGGATCAACCAGCCCAAACAGCTCGTCAACACCTGTC
CCCTCCTCCTTTGA
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