EsuBft1090_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1090_5a-0001
Unique NameEsuBft1090_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_586contigScaffold_586:33099..33332 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FQN9
ProteomeIdEsuBft1090_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length23
Hectar predicted targeting categoryother localisation
Evalue5.08e-34
EggNOG OGs2E3IK@1|root,2SAKM@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1090_5aEsuBft1090_5aEctocarpus subulatus male Bft15bgeneScaffold_586 33099..33332 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1090_5a-0001-exonEsuBft1090_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_586 33099..33332 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1090_5a-0001-cdsEsuBft1090_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_586 33099..33332 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1090_5a-0001EsuBft1090_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_586 33099..33332 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1090_5a-0001 ID=EsuBft1090_5a-0001|Name=EsuBft1090_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=234bp|location=Sequence derived from alignment at Scaffold_586:33099..33332- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACGGGCAACCACGGCAGCTGTATCATCACCACATGCCACCAGCTA
CCGGTGGTGCTGTGTGGAGCAGGTAGACCAGGCCGCTTTTGTGGCAGGTA
GGAGCAACGGGTGGCGGTACATGGGGCCTGGAGGGATCACCTATAGGCGC
CAGGCCGTCTTCGGCACGGGGATTAGGGTTCGTATCTCCTTCCCTTCCTC
GCCGGGGAAAACCATCGATTTAGTAAATCAGTAA
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protein sequence of EsuBft1090_5a-0001

>EsuBft1090_5 ID=EsuBft1090_5|Name=EsuBft1090_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=77bp
MARATTAAVSSPHATSYRWCCVEQVDQAAFVAGRSNGWRYMGPGGITYRR
QAVFGTGIRVRISFPSSPGKTIDLVNQ
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mRNA from alignment at Scaffold_586:33099..33332-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1090_5a-0001 ID=EsuBft1090_5a-0001|Name=EsuBft1090_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=234bp|location=Sequence derived from alignment at Scaffold_586:33099..33332- (Ectocarpus subulatus male Bft15b)
ATGGCACGGGCAACCACGGCAGCTGTATCATCACCACATGCCACCAGCTA
CCGGTGGTGCTGTGTGGAGCAGGTAGACCAGGCCGCTTTTGTGGCAGGTA
GGAGCAACGGGTGGCGGTACATGGGGCCTGGAGGGATCACCTATAGGCGC
CAGGCCGTCTTCGGCACGGGGATTAGGGTTCGTATCTCCTTCCCTTCCTC
GCCGGGGAAAACCATCGATTTAGTAAATCAGTAA
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Coding sequence (CDS) from alignment at Scaffold_586:33099..33332-

>EsuBft1090_5a-0001 ID=EsuBft1090_5a-0001|Name=EsuBft1090_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=234bp|location=Sequence derived from alignment at Scaffold_586:33099..33332- (Ectocarpus subulatus male Bft15b)
ATGGCACGGGCAACCACGGCAGCTGTATCATCACCACATGCCACCAGCTA
CCGGTGGTGCTGTGTGGAGCAGGTAGACCAGGCCGCTTTTGTGGCAGGTA
GGAGCAACGGGTGGCGGTACATGGGGCCTGGAGGGATCACCTATAGGCGC
CAGGCCGTCTTCGGCACGGGGATTAGGGTTCGTATCTCCTTCCCTTCCTC
GCCGGGGAAAACCATCGATTTAGTAAATCAGTAA
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