EsuBft108_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft108_8a-0001
Unique NameEsuBft108_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_345contigScaffold_345:85815..86480 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft108_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length66
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft108_8aEsuBft108_8aEctocarpus subulatus male Bft15bgeneScaffold_345 85815..86480 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_8a-0001-exonEsuBft108_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_345 85815..86480 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_8a-0001-exonagat-three_prime_utr-873Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_345 85815..86315 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_8a-0001-cdsEsuBft108_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_345 86316..86480 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_8a-0001EsuBft108_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_345 86316..86480 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft108_8a-0001 ID=EsuBft108_8a-0001|Name=EsuBft108_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=666bp|location=Sequence derived from alignment at Scaffold_345:85815..86480- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGTGAACAATCTGTCGATAGCCATCATGTCACGCGAAGGGATTGG
GCAGTCGGCAATCAATCGATACTTAGAAGGGAAGTGGCAAATGCATATCG
ATAACAATTGTGCTGAACGATGGGCGGACTACCACGTACACCGCAGGCTG
TTGCTCAACCAATAGGCTGTCNCTTGTCGATATCCTATGGTGTGGATCAA
CGTAGCAGCTCACACGGTGATCAACAGCTATCACCGGAGAAAACAGGGTG
CGGCGAAACATCTCGGTCGGTTGTTGTGCGTTCAATAGGGTCTTATGGCT
GGTCATCAACACCCATCGTAGGAAACCAATCGCTTGGCAAAGAAACGGTC
GACGCTGATCGCACCCCTCGATGCTCATTCTAATTGACATGTCGATCCCC
ATCAGTCGACAACGATCCCCATCAGTCGAGAACAAAAAGATCCCATCACC
CATCACCTGGATTCCTGTCATCGTTCAAGTGTTTAGGCTCATCGCATTAA
TACACGTGATCACAGATGCGCCCCCGGCATTGTAGGCGGGTGTGGGCTTT
TTGCTTCTCGGCTGGTCGGCGCTACCCTATCTTCCCTTACTCCATGTGAT
ATCTGTTTTTTTTTCTACTTTATATTTTCCCGTGTACTCTAGTTTTTGAT
GTACTGCTGTAGCGCC
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protein sequence of EsuBft108_8a-0001

>EsuBft108_8 ID=EsuBft108_8|Name=EsuBft108_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=54bp
MPVNNLSIAIMSREGIGQSAINRYLEGKWQMHIDNNCAERWADYHVHRRL
LLNQ
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mRNA from alignment at Scaffold_345:85815..86480-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft108_8a-0001 ID=EsuBft108_8a-0001|Name=EsuBft108_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=666bp|location=Sequence derived from alignment at Scaffold_345:85815..86480- (Ectocarpus subulatus male Bft15b)
ATGCCGGTGAACAATCTGTCGATAGCCATCATGTCACGCGAAGGGATTGG
GCAGTCGGCAATCAATCGATACTTAGAAGGGAAGTGGCAAATGCATATCG
ATAACAATTGTGCTGAACGATGGGCGGACTACCACGTACACCGCAGGCTG
TTGCTCAACCAATAGGCTGTCNCTTGTCGATATCCTATGGTGTGGATCAA
CGTAGCAGCTCACACGGTGATCAACAGCTATCACCGGAGAAAACAGGGTG
CGGCGAAACATCTCGGTCGGTTGTTGTGCGTTCAATAGGGTCTTATGGCT
GGTCATCAACACCCATCGTAGGAAACCAATCGCTTGGCAAAGAAACGGTC
GACGCTGATCGCACCCCTCGATGCTCATTCTAATTGACATGTCGATCCCC
ATCAGTCGACAACGATCCCCATCAGTCGAGAACAAAAAGATCCCATCACC
CATCACCTGGATTCCTGTCATCGTTCAAGTGTTTAGGCTCATCGCATTAA
TACACGTGATCACAGATGCGCCCCCGGCATTGTAGGCGGGTGTGGGCTTT
TTGCTTCTCGGCTGGTCGGCGCTACCCTATCTTCCCTTACTCCATGTGAT
ATCTGTTTTTTTTTCTACTTTATATTTTCCCGTGTACTCTAGTTTTTGAT
GTACTGCTGTAGCGCC
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Coding sequence (CDS) from alignment at Scaffold_345:85815..86480-

>EsuBft108_8a-0001 ID=EsuBft108_8a-0001|Name=EsuBft108_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=165bp|location=Sequence derived from alignment at Scaffold_345:85815..86480- (Ectocarpus subulatus male Bft15b)
ATGCCGGTGAACAATCTGTCGATAGCCATCATGTCACGCGAAGGGATTGG
GCAGTCGGCAATCAATCGATACTTAGAAGGGAAGTGGCAAATGCATATCG
ATAACAATTGTGCTGAACGATGGGCGGACTACCACGTACACCGCAGGCTG
TTGCTCAACCAATAG
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