EsuBft108_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft108_7a-0001
Unique NameEsuBft108_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_345contigScaffold_345:81419..84414 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G4Z8
ProteomeIdEsuBft108_7
Protein domainsPTHR23272
Protein domainsIPR012337
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2759|Eukaryota
Length180
Hectar predicted targeting categoryother localisation
Evalue1.05e-83
EggNOG OGs2CZK4@1|root,2SARG@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft108_7aEsuBft108_7aEctocarpus subulatus male Bft15bgeneScaffold_345 81419..84414 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_7a-0001EsuBft108_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_345 81419..84414 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_7a-0001-exonagat-exon-105000Ectocarpus subulatus male Bft15bexonScaffold_345 81419..81937 -
EsuBft108_7a-0001-exonagat-exon-104998Ectocarpus subulatus male Bft15bexonScaffold_345 82476..82639 -
EsuBft108_7a-0001-exonEsuBft108_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_345 82693..83209 -
EsuBft108_7a-0001-exonagat-exon-104997Ectocarpus subulatus male Bft15bexonScaffold_345 83623..83814 -
EsuBft108_7a-0001-exonagat-exon-104999Ectocarpus subulatus male Bft15bexonScaffold_345 83998..84414 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_7a-0001-cdsEsuBft108_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_345 81419..81937 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft108_7a-0001 ID=EsuBft108_7a-0001|Name=EsuBft108_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1809bp|location=Sequence derived from alignment at Scaffold_345:81419..84414- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGTGCTGAATTTCGTGTCAACTCTCGACGCAGCTGTGCGCATCTT
CTACATCGACTCGAGCGGGTTTCTGAGGACACACTTGTTGGCGGTGAAGC
TTTTCCGGCCGGCTCCGTCGCTCGGGAAGGTCACTGGCAAGGTGGTGCTG
AAGTGGTTCCTGCAGGTGCTGGGCCAGCACGGGATACCGATCGAGCGCTT
GGCCGGCGCCGTGACGGACGGCGGGGGTGACGTCCGGACCGGAATCGGCC
AGGTAGCTACGCGGGCGTGGTGTGGGCCGCACATGCTCAACCGCGTCATC
ATCGACGGCACCGGCATGGCCAACACAGCAAACCAGTCCAAGAATCTGTC
GTGCCGCGGCTTGATGGAGATCTGCAAGAAGGTCGTCCAACATGTCAACA
GATCTCAGGGGTTCAAGATCGAACTCGAGGACACGCTCGAGAAGGCGTCC
GACGGCAAGCGTTGGAAGGCGAAGCTCTCACAAGCGGTGTCCCAGCGCTG
GATCAGCCTGTGCAAGATGTTGCTCCGCATCCTAGAGCAATGGGTCGCCA
TCGACAAGGTCTACGCCAGCAACCGCGAGAAATTCCCTTTGGGAGATCTG
CGCCGTGAGATGGAGGAAGTTTACAGCATGCTGAGCGAGTTCAAGGCCGT
TATCGAGTACTCCCAGACGACGCACGAGGCCACTGCGCAGAAGGCGCTGG
AGATGACTGTGGATCTTCTCACCTACACCCTCGACCCCGCGGAGCGTCTC
CGAGTGTACCACGTCGTTTCTATCGGAGCGGAGGGCGACACCACCAAGTA
CGACGACATCGAGCACGAAGACCTCACGCCGATTGGCCGCAACACACGTG
TCGCGTTGAGGAAAGCACTTGTGGCACGGTTTTTGCCGCGCTACGGCCGC
GAGCTTGACGCTGGCGGCCACCTCTTTGACCGCACGATGCTTCTCAGTCC
AAACCAGAGGAAGCTGAGGTACGTGGACGCTCTGCGCTCTTCAGCTGCCA
AGGAGGGCGACATGCGGTCCTCTAGCGCCATCAAGGCGAAGATCAAGGAG
GAGGTGACCGACCTCCTTGTCGCGGCCATCGAAGCGATTAGAGCAACGGC
ACCATCGGACGGGGGGGTGGAGAGCACGTCCAGCGCCTCCGGTGACGGAA
ACGATGACCACCGGCGCCGGCGGCGCCGATTTTTAGACGACGACGATGAA
GGCAGCGACAGCGACATGGACGCGACTCCGGTGGAGGAAGACCCCAGGAA
GGAAGCGGAGGCCATGATGAAGGAATGGCTCGCAGCTCAGATTCCACCAG
AAGAGCGGACGGAGAACGGAGCAGAATACTGGCGCCTTCACGGCAAGAAA
CACCCCTTCGCTCTCCGATTGGTCGCGCAGGCGGTGTACGGCGTCCCTGC
CTCAGCGGGTGTGGTGGAGCGAGATTTTAGCATCGCGGACTTGTTCATGC
CCCGCAAGCGTGCCTCGCTTGATCCAGCGTACTTGGAGATGCAGCTCTAC
CTGCGAGCGCACTTCGACAGCATCCCCATGGACATCCCCAAGCTGGACGA
CGCTTCCGTGGCGGCCGCCATCCCGGACCGTTTCAGGGACCCACAGGCCG
TCGAAGAGGTGCGGGTGTTGGACTTCACCGAGGAGGAGAAGGAGGTGGGG
GTTTTCGACTTCGTGCCGGATGAGGAGGGGGACTTCGTGCCGGATGAGGA
GGGGGAGGACGCCGAGGGCCCCGAGCCGAACGTGCCCGTGCCCCCTGTCG
GAGAAGTGGGGGGGGGGGTGGCTCCAGCGGCTGGAGACGGGCAATCCACC
ACCAACTAG
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protein sequence of EsuBft108_7a-0001

>EsuBft108_7 ID=EsuBft108_7|Name=EsuBft108_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=602bp
MMVLNFVSTLDAAVRIFYIDSSGFLRTHLLAVKLFRPAPSLGKVTGKVVL
KWFLQVLGQHGIPIERLAGAVTDGGGDVRTGIGQVATRAWCGPHMLNRVI
IDGTGMANTANQSKNLSCRGLMEICKKVVQHVNRSQGFKIELEDTLEKAS
DGKRWKAKLSQAVSQRWISLCKMLLRILEQWVAIDKVYASNREKFPLGDL
RREMEEVYSMLSEFKAVIEYSQTTHEATAQKALEMTVDLLTYTLDPAERL
RVYHVVSIGAEGDTTKYDDIEHEDLTPIGRNTRVALRKALVARFLPRYGR
ELDAGGHLFDRTMLLSPNQRKLRYVDALRSSAAKEGDMRSSSAIKAKIKE
EVTDLLVAAIEAIRATAPSDGGVESTSSASGDGNDDHRRRRRRFLDDDDE
GSDSDMDATPVEEDPRKEAEAMMKEWLAAQIPPEERTENGAEYWRLHGKK
HPFALRLVAQAVYGVPASAGVVERDFSIADLFMPRKRASLDPAYLEMQLY
LRAHFDSIPMDIPKLDDASVAAAIPDRFRDPQAVEEVRVLDFTEEEKEVG
VFDFVPDEEGDFVPDEEGEDAEGPEPNVPVPPVGEVGGGVAPAAGDGQST
TN
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mRNA from alignment at Scaffold_345:81419..84414-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft108_7a-0001 ID=EsuBft108_7a-0001|Name=EsuBft108_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2996bp|location=Sequence derived from alignment at Scaffold_345:81419..84414- (Ectocarpus subulatus male Bft15b)
ATGATGGTGCTGAATTTCGTGTCAACTCTCGACGCAGCTGTGCGCATCTT
CTACATCGACTCGAGCGGGTTTCTGAGGACACACTTGTTGGCGGTGAAGC
TTTTCCGGCCGGCTCCGTCGCTCGGGAAGGTCACTGGCAAGGTGGTGCTG
AAGTGGTTCCTGCAGGTGCTGGGCCAGCACGGGATACCGATCGAGCGCTT
GGCCGGCGCCGTGACGGACGGCGGGGGTGACGTCCGGACCGGAATCGGCC
AGGTAGCTACGCGGGCGTGGTGTGGGCCGCACATGCTCAACCGCGTCATC
ATCGACGGCACCGGCATGGCCAACACAGCAAACCAGTCCAAGAATCTGTC
GTGCCGCGGCTTGATGGAGATCTGCAAGAAGGTCGTCCAACATGTCAACA
GATCTCAGGGGTTCAAGGTGAAGCGACTCTCTATTTGTCGGGTTGCACAA
CTCTGCTTGTACTGCTTCAGGGTTATGACTCAGGGTTAGGTAGAAGCCTT
GCGATATTCTTCACTTTCCCTATTCTCATCGGTTCCCTTTCAACCCGCCA
TGCCGAAATACCGATGTGCGTTGTTGGCGATGCCCCGCTTTGAATGGCAG
ATCGAACTCGAGGACACGCTCGAGAAGGCGTCCGACGGCAAGCGTTGGAA
GGCGAAGCTCTCACAAGCGGTGTCCCAGCGCTGGATCAGCCTGTGCAAGA
TGTTGCTCCGCATCCTAGAGCAATGGGTCGCCATCGACAAGGTCTACGCC
AGCAACCGCGAGAAATTCCCTTTGGGAGATCTGCGCCGTGAGGTCAGCAG
GGTCCATGTGTTCGGAGGCTTGGAATTTTTGTTTTTTCTCGTATTGTTTT
TCGGGAAAAGGTGGCCCGGGCTCTTGCTGTGTCCGCTAGAAACCAAGTAC
ACCAGCTTATGTAGGAGGAGATGACTTCGTATCACGCATCAAAGTGTGTT
GCTTTCGAGGTCAATGACTCCCACGTTCCCGCTCACGTGGTATTCAAGCT
GTGTGGTGTGTATGTTGCCCTTTTGGGTTTTGGTAGGCGCGGTGGGGGAG
CGCCCCCGGGAAAAATTATGCTGAAGACGAACGCGAGGCACATGATTCCA
TACCGCTGAAGAATATGCTGTTGCCCTCCTCGTTGCACGGTACGTGCCGC
GTCGCATTTAAAAAGCCACTTTCTCCCCCCGTCTCTATATTTTATCCCTT
CTCAGATGGAGGAAGTTTACAGCATGCTGAGCGAGTTCAAGGCCGTTATC
GAGTACTCCCAGACGACGCACGAGGCCACTGCGCAGAAGGCGCTGGAGAT
GACTGTGGATCTTCTCACCTACACCCTCGACCCCGCGGAGCGTCTCCGAG
TGTACCACGTCGTTTCTATCGGAGCGGAGGGCGACACCACCAAGTACGAC
GACATCGAGCACGAAGACCTCACGCCGATTGGCCGCAACACACGTGTCGC
GTTGAGGAAAGCACTTGTGGCACGGTTTTTGCCGCGCTACGGCCGCGAGC
TTGACGCTGGCGGCCACCTCTTTGACCGCACGATGCTTCTCAGTCCAAAC
CAGAGGAAGCTGAGGTACGTGGACGCTCTGCGCTCTTCAGCTGCCAAGGA
GGGCGACATGCGGTCCTCTAGCGCCATCAAGGCGAAGATCAAGGAGGAGG
TGACCGACCTCCTTGTCGCGGCCATCGAAGCGATTAGAGCAACGGCACCA
TCGGACGGGGGGGTGGAGAGCAGTGCGGGAGGGGGGCAACCGCAGGCCAA
GCGGGCTAAACCACCTCTACCGCAGCGTCCAGCGCCTCCGGTGACGGAAA
CGATGACCACCGGCGCCGGCGGCGCCGATTTTTAGACGACGACGATGAAG
GCAGCGACAGCGACATGGACGCGACTCCGGTGGAGGAAGACCCCAGGAAG
GAAGCGGAGGCCATGATGAAGGAATGGCTCGCAGCTCAGGTGACAATTGC
ATTTGCGCGTGGGTTGTGGTTGTGCGGTCCGCCTCGGCGACACAGCTTGT
ATGCGGAACTACGGTGCCCCAGGTGGCAGTTGTGTGAGGAGTTGGTGATA
ATGATTGAAGCAAGTTCAGACCAGCCCCTCTCACCCACCCGTACGTGGTG
GTGCCCATCGGCTTCATGTAAACACAAACGAAAACAAGCTTTCCAAATAC
ATGTTCAACAGGCGCGGCCGTGAAACCTTCTGTCTCGGTGCTTCAAAAGC
ACTGCTCTCTACGTGTTTTCCATCTTGTGGCTCGGTGAAATAGAAATCAT
ATGGTTTGACTTGCACTCAAATACCCGAGCTGAGTGCCTATTTGTTTGTA
AGAAATTCCATCTCTATTTCTCAGAAGGGCATCGACCCTGGTTTGTTCAA
CAGACGTCTCGATAGTATTTTTCTGTTGCGATCAATCCACGGGTTTGACT
TGAAGCGCGACGGCCGTCTCCGCACTTTTATGCCCCAAGATTCAACGCTC
ACGATCAATGTTTTCGCACCCATGCAGATTCCACCAGAAGAGCGGACGGA
GAACGGAGCAGAATACTGGCGCCTTCACGGCAAGAAACACCCCTTCGCTC
TCCGATTGGTCGCGCAGGCGGTGTACGGCGTCCCTGCCTCAGCGGGTGTG
GTGGAGCGAGATTTTAGCATCGCGGACTTGTTCATGCCCCGCAAGCGTGC
CTCGCTTGATCCAGCGTACTTGGAGATGCAGCTCTACCTGCGAGCGCACT
TCGACAGCATCCCCATGGACATCCCCAAGCTGGACGACGCTTCCGTGGCG
GCCGCCATCCCGGACCGTTTCAGGGACCCACAGGCCGTCGAAGAGGTGCG
GGTGTTGGACTTCACCGAGGAGGAGAAGGAGGTGGGGGTTTTCGACTTCG
TGCCGGATGAGGAGGGGGACTTCGTGCCGGATGAGGAGGGGGAGGACGCC
GAGGGCCCCGAGCCGAACGTGCCCGTGCCCCCTGTCGGAGAAGTGGGGGG
GGGGGTGGCTCCAGCGGCTGGAGACGGGCAATCCACCACCAACTAG
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Coding sequence (CDS) from alignment at Scaffold_345:81419..84414-

>EsuBft108_7a-0001 ID=EsuBft108_7a-0001|Name=EsuBft108_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1809bp|location=Sequence derived from alignment at Scaffold_345:81419..84414- (Ectocarpus subulatus male Bft15b)
ATGATGGTGCTGAATTTCGTGTCAACTCTCGACGCAGCTGTGCGCATCTT
CTACATCGACTCGAGCGGGTTTCTGAGGACACACTTGTTGGCGGTGAAGC
TTTTCCGGCCGGCTCCGTCGCTCGGGAAGGTCACTGGCAAGGTGGTGCTG
AAGTGGTTCCTGCAGGTGCTGGGCCAGCACGGGATACCGATCGAGCGCTT
GGCCGGCGCCGTGACGGACGGCGGGGGTGACGTCCGGACCGGAATCGGCC
AGGTAGCTACGCGGGCGTGGTGTGGGCCGCACATGCTCAACCGCGTCATC
ATCGACGGCACCGGCATGGCCAACACAGCAAACCAGTCCAAGAATCTGTC
GTGCCGCGGCTTGATGGAGATCTGCAAGAAGGTCGTCCAACATGTCAACA
GATCTCAGGGGTTCAAGATCGAACTCGAGGACACGCTCGAGAAGGCGTCC
GACGGCAAGCGTTGGAAGGCGAAGCTCTCACAAGCGGTGTCCCAGCGCTG
GATCAGCCTGTGCAAGATGTTGCTCCGCATCCTAGAGCAATGGGTCGCCA
TCGACAAGGTCTACGCCAGCAACCGCGAGAAATTCCCTTTGGGAGATCTG
CGCCGTGAGATGGAGGAAGTTTACAGCATGCTGAGCGAGTTCAAGGCCGT
TATCGAGTACTCCCAGACGACGCACGAGGCCACTGCGCAGAAGGCGCTGG
AGATGACTGTGGATCTTCTCACCTACACCCTCGACCCCGCGGAGCGTCTC
CGAGTGTACCACGTCGTTTCTATCGGAGCGGAGGGCGACACCACCAAGTA
CGACGACATCGAGCACGAAGACCTCACGCCGATTGGCCGCAACACACGTG
TCGCGTTGAGGAAAGCACTTGTGGCACGGTTTTTGCCGCGCTACGGCCGC
GAGCTTGACGCTGGCGGCCACCTCTTTGACCGCACGATGCTTCTCAGTCC
AAACCAGAGGAAGCTGAGGTACGTGGACGCTCTGCGCTCTTCAGCTGCCA
AGGAGGGCGACATGCGGTCCTCTAGCGCCATCAAGGCGAAGATCAAGGAG
GAGGTGACCGACCTCCTTGTCGCGGCCATCGAAGCGATTAGAGCAACGGC
ACCATCGGACGGGGGGGTGGAGAGCACGTCCAGCGCCTCCGGTGACGGAA
ACGATGACCACCGGCGCCGGCGGCGCCGATTTTTAGACGACGACGATGAA
GGCAGCGACAGCGACATGGACGCGACTCCGGTGGAGGAAGACCCCAGGAA
GGAAGCGGAGGCCATGATGAAGGAATGGCTCGCAGCTCAGATTCCACCAG
AAGAGCGGACGGAGAACGGAGCAGAATACTGGCGCCTTCACGGCAAGAAA
CACCCCTTCGCTCTCCGATTGGTCGCGCAGGCGGTGTACGGCGTCCCTGC
CTCAGCGGGTGTGGTGGAGCGAGATTTTAGCATCGCGGACTTGTTCATGC
CCCGCAAGCGTGCCTCGCTTGATCCAGCGTACTTGGAGATGCAGCTCTAC
CTGCGAGCGCACTTCGACAGCATCCCCATGGACATCCCCAAGCTGGACGA
CGCTTCCGTGGCGGCCGCCATCCCGGACCGTTTCAGGGACCCACAGGCCG
TCGAAGAGGTGCGGGTGTTGGACTTCACCGAGGAGGAGAAGGAGGTGGGG
GTTTTCGACTTCGTGCCGGATGAGGAGGGGGACTTCGTGCCGGATGAGGA
GGGGGAGGACGCCGAGGGCCCCGAGCCGAACGTGCCCGTGCCCCCTGTCG
GAGAAGTGGGGGGGGGGGTGGCTCCAGCGGCTGGAGACGGGCAATCCACC
ACCAACTAG
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