EsuBft108_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft108_6a-0001
Unique NameEsuBft108_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_345contigScaffold_345:79211..80026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft108_6
Protein domainsSignalP-TM
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length57
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft108_6aEsuBft108_6aEctocarpus subulatus male Bft15bgeneScaffold_345 79211..80026 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_6a-0001EsuBft108_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_345 79211..79397 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_6a-0001-exonEsuBft108_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_345 79211..79228 +
EsuBft108_6a-0001-exonagat-exon-104996Ectocarpus subulatus male Bft15bexonScaffold_345 79311..79689 +
EsuBft108_6a-0001-exonagat-exon-104995Ectocarpus subulatus male Bft15bexonScaffold_345 79847..80026 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_6a-0001-cdsEsuBft108_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_345 79211..79228 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_6a-0001-exonagat-three_prime_utr-871Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_345 79398..79689 +
EsuBft108_6a-0001-exonagat-three_prime_utr-872Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_345 79847..80026 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft108_6a-0001 ID=EsuBft108_6a-0001|Name=EsuBft108_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=577bp|location=Sequence derived from alignment at Scaffold_345:79211..80026+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGCGGCAAACCAGGGTTTCCTCGGTTGCGTGCCACGCAGCAACAAG
CCCTCTGTCTGCACGAAGGGCGATCATGTCGCTGCCCTTGGCGACGTTGA
GGTAGCTCCAGAAGCTCGCAGCACTCAAAGCAAAGGGCGTGATCCTTGAA
CGACAGTTCGAGGTGATCCATGTGAGGGAGGGCAACTCCCTCTCGAGCAA
AGGCTGGGAGGCCTTCGATTTGGCATGGAACCTGAGGAGCAGCGGCGTGT
TTTCGGAAGAAGAGTGGACCACGCAGGTCGATGGAGATATCTTCGGCATC
ATCAACAGCGCTCGCCCTACACTGCTGTCACGCAGCAACAAGCCCTCTGT
CTGCATCCGGAATGCGATTCTAGCGCGAAGACACTCACTCGTGGCAAAGA
CGGCCAGTGGCCAGATGGACGAGCTGAGTCTCGTGGACGACGACGACAGC
ATGGAAACGGACGACGAGATTCACGCCATGGAGATTCCGGATGGGTTTCG
CATTCAAGCATCTACACCGGCAGCTCTTGACTATTCGTTACTGCAGCGTG
GAGTACTCGTTAGGCTGGGCATGGGGT
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protein sequence of EsuBft108_6a-0001

>EsuBft108_6 ID=EsuBft108_6|Name=EsuBft108_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=34bp
MRRQTRVSSVACHAATSPLSARRAIMSLPLATLR
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mRNA from alignment at Scaffold_345:79211..80026+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft108_6a-0001 ID=EsuBft108_6a-0001|Name=EsuBft108_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=816bp|location=Sequence derived from alignment at Scaffold_345:79211..80026+ (Ectocarpus subulatus male Bft15b)
ATGAGGCGGCAAACCAGGGTGGGTACCGAAAATTAGCGAACCACGAGGAG
GGTGTGTGTGTGGAATATCGCTGTGCCCCCTTCGCTTCTGCGGCCCTCAG
GTTTCCTCGGTTGCGTGCCACGCAGCAACAAGCCCTCTGTCTGCACGAAG
GGCGATCATGTCGCTGCCCTTGGCGACGTTGAGGTAGCTCCAGAAGCTCG
CAGCACTCAAAGCAAAGGGCGTGATCCTTGAACGACAGTTCGAGGTGATC
CATGTGAGGGAGGGCAACTCCCTCTCGAGCAAAGGCTGGGAGGCCTTCGA
TTTGGCATGGAACCTGAGGAGCAGCGGCGTGTTTTCGGAAGAAGAGTGGA
CCACGCAGGTCGATGGAGATATCTTCGGCATCATCAACAGCGCTCGCCCT
ACACTGCTGTCACGCAGCAACAAGCCCTCTGTCTGCATCCGGAATGCGAT
TCTAGCGCGAAGACACTCACTCGTGGCAAGTTAGATGCCCACCAGGGTTT
GTCACTCCCCTGCTTGGTTGTTGTTGCGTTTGTTTCCTGTCGCTGTTGCT
TTTGCCCTTGCCGTTGCCGTTAAACATGAGTTGCGTAGATGACATATCAG
TTTCTGTGACATTGTCGTTTGTGCCCGTCGTTGCAGAGACGGCCAGTGGC
CAGATGGACGAGCTGAGTCTCGTGGACGACGACGACAGCATGGAAACGGA
CGACGAGATTCACGCCATGGAGATTCCGGATGGGTTTCGCATTCAAGCAT
CTACACCGGCAGCTCTTGACTATTCGTTACTGCAGCGTGGAGTACTCGTT
AGGCTGGGCATGGGGT
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Coding sequence (CDS) from alignment at Scaffold_345:79211..80026+

>EsuBft108_6a-0001 ID=EsuBft108_6a-0001|Name=EsuBft108_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=105bp|location=Sequence derived from alignment at Scaffold_345:79211..80026+ (Ectocarpus subulatus male Bft15b)
ATGAGGCGGCAAACCAGGGTTTCCTCGGTTGCGTGCCACGCAGCAACAAG
CCCTCTGTCTGCACGAAGGGCGATCATGTCGCTGCCCTTGGCGACGTTGA
GGTAG
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