EsuBft108_36a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft108_36a-0001
Unique NameEsuBft108_36a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_345contigScaffold_345:365072..365662 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog588596.U9UEZ3
ProteomeIdEsuBft108_36
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl4751|Fungi
Length59
Evalue0.000862
EggNOG OGs29JY0@1|root,2RT6R@2759|Eukaryota,39VBJ@33154|Opisthokonta,3P12S@4751|Fungi
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft108_36aEsuBft108_36aEctocarpus subulatus male Bft15bgeneScaffold_345 365072..365662 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_36a-0001-exonEsuBft108_36a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_345 365072..365662 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_36a-0001-cdsEsuBft108_36a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_345 365072..365662 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_36a-0001EsuBft108_36Ectocarpus subulatus male Bft15bpolypeptideScaffold_345 365072..365662 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft108_36a-0001 ID=EsuBft108_36a-0001|Name=EsuBft108_36a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=591bp|location=Sequence derived from alignment at Scaffold_345:365072..365662- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGATGCGGGTGGCGAGCCAGGTCGCGGGCAGGCGAAACNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
ACCCAGAGCTCAACGCAATCGAGCGATACTGGGGGTACATCAAGTATCTC
TTCCGCCTCCACTGGGAGTATTCCCTTCGCCACATGCTCCAGGTCTTGCC
CGGCGCGTTGAGCGGCGTACCCGCACGGTTTATCCGCGCATGGAGCAGGG
TGACGTGGCTGTACATCGAAGCCTACGACGAGAGCCAGGAGGACTACCTC
GAGTACCGCGATCTCAAGGAGTGGGGGAAGCACCGAGAAGCCACCGCCAG
GGGAGATGCCGTGATTCAGGCGAGGGGGGCCGGGAAGACGCCGGAGCAGA
AGAAGGCAGCCGAGGCGAAGGCGCTTGCGGCTGCGCAGGAAGTGCGCAAG
AAGTCGATGGCAGCGACCAGGGAAGCCTTCAACACGTGGACGAGCAAGAG
AGCCTCCCGGAAGGAGCAGCTACGGCTGTGGATTTTGCGCAACACGATGA
ATTTTTTGAGGAAATGGTTGGGCGGGCACGCTCAGGCGTGA
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protein sequence of EsuBft108_36a-0001

>EsuBft108_36 ID=EsuBft108_36|Name=EsuBft108_36a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=196bp
MRMRVASQVAGRRNXXXXXXXXXXXXXXXXXXXXPELNAIERYWGYIKYL
FRLHWEYSLRHMLQVLPGALSGVPARFIRAWSRVTWLYIEAYDESQEDYL
EYRDLKEWGKHREATARGDAVIQARGAGKTPEQKKAAEAKALAAAQEVRK
KSMAATREAFNTWTSKRASRKEQLRLWILRNTMNFLRKWLGGHAQA
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mRNA from alignment at Scaffold_345:365072..365662-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft108_36a-0001 ID=EsuBft108_36a-0001|Name=EsuBft108_36a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=591bp|location=Sequence derived from alignment at Scaffold_345:365072..365662- (Ectocarpus subulatus male Bft15b)
ATGAGGATGCGGGTGGCGAGCCAGGTCGCGGGCAGGCGAAACNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
ACCCAGAGCTCAACGCAATCGAGCGATACTGGGGGTACATCAAGTATCTC
TTCCGCCTCCACTGGGAGTATTCCCTTCGCCACATGCTCCAGGTCTTGCC
CGGCGCGTTGAGCGGCGTACCCGCACGGTTTATCCGCGCATGGAGCAGGG
TGACGTGGCTGTACATCGAAGCCTACGACGAGAGCCAGGAGGACTACCTC
GAGTACCGCGATCTCAAGGAGTGGGGGAAGCACCGAGAAGCCACCGCCAG
GGGAGATGCCGTGATTCAGGCGAGGGGGGCCGGGAAGACGCCGGAGCAGA
AGAAGGCAGCCGAGGCGAAGGCGCTTGCGGCTGCGCAGGAAGTGCGCAAG
AAGTCGATGGCAGCGACCAGGGAAGCCTTCAACACGTGGACGAGCAAGAG
AGCCTCCCGGAAGGAGCAGCTACGGCTGTGGATTTTGCGCAACACGATGA
ATTTTTTGAGGAAATGGTTGGGCGGGCACGCTCAGGCGTGA
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Coding sequence (CDS) from alignment at Scaffold_345:365072..365662-

>EsuBft108_36a-0001 ID=EsuBft108_36a-0001|Name=EsuBft108_36a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=591bp|location=Sequence derived from alignment at Scaffold_345:365072..365662- (Ectocarpus subulatus male Bft15b)
ATGAGGATGCGGGTGGCGAGCCAGGTCGCGGGCAGGCGAAACNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
ACCCAGAGCTCAACGCAATCGAGCGATACTGGGGGTACATCAAGTATCTC
TTCCGCCTCCACTGGGAGTATTCCCTTCGCCACATGCTCCAGGTCTTGCC
CGGCGCGTTGAGCGGCGTACCCGCACGGTTTATCCGCGCATGGAGCAGGG
TGACGTGGCTGTACATCGAAGCCTACGACGAGAGCCAGGAGGACTACCTC
GAGTACCGCGATCTCAAGGAGTGGGGGAAGCACCGAGAAGCCACCGCCAG
GGGAGATGCCGTGATTCAGGCGAGGGGGGCCGGGAAGACGCCGGAGCAGA
AGAAGGCAGCCGAGGCGAAGGCGCTTGCGGCTGCGCAGGAAGTGCGCAAG
AAGTCGATGGCAGCGACCAGGGAAGCCTTCAACACGTGGACGAGCAAGAG
AGCCTCCCGGAAGGAGCAGCTACGGCTGTGGATTTTGCGCAACACGATGA
ATTTTTTGAGGAAATGGTTGGGCGGGCACGCTCAGGCGTGA
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