EsuBft108_34a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft108_34a-0001
Unique Name	EsuBft108_34a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_345	contig	Scaffold_345:354122..359763 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft108_34
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	510
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft108_34a	EsuBft108_34a	Ectocarpus subulatus male Bft15b	gene	Scaffold_345 354122..359763 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft108_34a-0001-exon	EsuBft108_34a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_345 354122..358563 -
EsuBft108_34a-0001-exon	agat-exon-105107	Ectocarpus subulatus male Bft15b	exon	Scaffold_345 358936..359156 -
EsuBft108_34a-0001-exon	agat-exon-105108	Ectocarpus subulatus male Bft15b	exon	Scaffold_345 359319..359763 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft108_34a-0001-exon	agat-three_prime_utr-867	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_345 354122..358455 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft108_34a-0001-cds	EsuBft108_34a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_345 358456..358563 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft108_34a-0001	EsuBft108_34	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_345 358456..359763 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_345:354122..359763-
coding sequence from alignment at Scaffold_345:354122..359763-

spliced messenger RNA

>EsuBft108_34a-0001 ID=EsuBft108_34a-0001|Name=EsuBft108_34a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5108bp|location=Sequence derived from alignment at Scaffold_345:354122..359763- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTACGTCGGACAGCGGTTCCGTCGGAGGGCAGGGGGAAGAGACCTC
AGCCACGCAACAGCAGCACGCCGAGGATCCGGCGAATGCGAAGCTGGAGG
GACAGTTATCGCAGCTGATGAGCGTAGTGATGGAGTTGAAGAGGAAGGAG
CCTGGTGACGCCGTGGCGGGCGATGCCAGTAGGGGCAGCGGTGCTGCCGT
CCCAAGCCAGAGAGAGGCTCTGCCGCCTGGGGGCGGCGGGGCATTTTCCC
GGGAAACGGCCCGTGATGGGCGAAATCACCCGCGGGAAAGCAGCTGGGAC
AACATACCGGGAGCGAGTCCTGGGGTTCAAGCGAGAGTGGCGGCTGGCTG
GGCAAGTAGGTCGGGAGCGAATCCTGATAGGCCAGCCGGAATGAGCCCGG
GCGTAGGACCGGACCGCGGGGAAGCGAGGGGGTTAAGCCCCCAAGGCTTG
GACGGGCAGCTTATCGGCAACGCCGAGAAGCACGCACCCGTCGGTGACCC
AAACAGGCCTAGCTCGGAGCTGTATAGCTTGGGCTACACAAGTGATGAGG
TTCAGAGGGGCCTCCAGGCGTTCCACTTTGTGACTACAGCCATCGTCCGC
GAAGCCGACAAGGCAATCGTGAATAAATGCGAGACCGCAAAGGAGATTCT
TGCGGAACTCGACAGTCCCAAGCTATACAGCTCCGAGCTAGGCCTGTTTG
GGTCACCGACGGGTGCGTGCTTCTCGGCGTTGCCGATAAGCTGCCCGTCC
AAGCCTACGGTTTTCGCGGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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GGGTGTTGTTGCCCCACTGATGGTTAGTCACTTGCGTGAAGAACCAGGGA
ATGTGTTCGTGGGTCTACGGACATGGTTTGGATACATTAGCCATACGTAC
AAGTGTGACGCAGATGGTGTAGAACCTTTTAGGTAGGGGTACGGTGATGA
TGCACCGGGACCCCCTTTGTTGAGTGCAGCAGCCGCGCTGCCACTCTCTC
TTTCTCCTCCTGCTTTCCGAGCACGACAGCGTCCTGGGTACGGGCGTTGT
CTCACCGTCTGAAGTTAATACACTACACAAACAAGTCCCGATAAGTACGG
GGAGTACGGCCGACAAACAGTCGTCGTCGTTGTGGTTGATGTTATTGTTG
CTGCTGCTGTCGTCACTGTTGTGGGCAGAGCCCAGCAGGAGGATGAGTCC
CACAAGCAGGAGGAACAGCGTCTTCATGATTCCTGCGAGATTCATGCTTG
AGTAACGGAGACGCGATTTCCGGGGAATAGTCTAATCATGACCACTACTG
ATAGTGACCTGGTTGTATCTTGTTCGCCGGCAATATGGGCGGTTGGGACA
AAAAAAATCCGCTGTCGAAATCGGATATCTCATCAATGGCAAACCGCACC
ACCTGAAGAAGAAGCAAACTCTGGAGAGTACGGCCGACGAACGAACGTGA
GAAGGAACTTGGGGATGGATATCGTTAGAATTAACAGCCGTCTTATCTAA
GACCTCCGCCCATCTATCTTTGCCCGCCGATCTACGCTACGTGTAGTTGA
AACAAGGGCGCCCGGTACTGGTGGTACGACTATTTCCAGGGGGAGATCAA
GATACAAGTATTGTATGATCGCGCTTGCTCTAGTGTGTTATTATTAATAG
CATCGACCGCGCCAACCGGCTGACCAATTAAAAGACGTCAGTGCCAGCGG
GTAAAAATCAAGGTCCCTGGAAGGGAGCCGAAACTCGAAAAATGCGCAAT
GCGCTTGCGAATGCCAATACGACTCTCTCTACATGTTCTTTCACGTAGGC
ACACATCTCAGGTACACAAATGCCCTCGCTCGAATCTAGGAAGCCACTGA
TGCTAAGAGCGAAGGACAGCAAAGGGTTTTTTCAAGCCCAGCCGAAGCCA
GGATATCGTGGTATGCTGCATCTCCCAATTTGATAATCGTGCACTCCCAA
GTGTCAGC

protein sequence of EsuBft108_34a-0001

>EsuBft108_34 ID=EsuBft108_34|Name=EsuBft108_34a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=258bp
MSTSDSGSVGGQGEETSATQQQHAEDPANAKLEGQLSQLMSVVMELKRKE
PGDAVAGDASRGSGAAVPSQREALPPGGGGAFSRETARDGRNHPRESSWD
NIPGASPGVQARVAAGWASRSGANPDRPAGMSPGVGPDRGEARGLSPQGL
DGQLIGNAEKHAPVGDPNRPSSELYSLGYTSDEVQRGLQAFHFVTTAIVR
EADKAIVNKCETAKEILAELDSPKLYSSELGLFGSPTGACFSALPISCPS
KPTVFAAX

mRNA from alignment at Scaffold_345:354122..359763-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft108_34a-0001 ID=EsuBft108_34a-0001|Name=EsuBft108_34a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5642bp|location=Sequence derived from alignment at Scaffold_345:354122..359763- (Ectocarpus subulatus male Bft15b)
ATGTCTACGTCGGACAGCGGTTCCGTCGGAGGGCAGGGGGAAGAGACCTC
AGCCACGCAACAGCAGCACGCCGAGGATCCGGCGAATGCGAAGCTGGAGG
GACAGTTATCGCAGCTGATGAGCGTAGTGATGGAGTTGAAGAGGAAGGAG
CCTGGTGACGCCGTGGCGGGCGATGCCAGTAGGGGCAGCGGTGCTGCCGT
CCCAAGCCAGAGAGAGGCTCTGCCGCCTGGGGGCGGCGGGGCATTTTCCC
GGGAAACGGCCCGTGATGGGCGAAATCACCCGCGGGAAAGCAGCTGGGAC
AACATACCGGGAGCGAGTCCTGGGGTTCAAGCGAGAGTGGCGGCTGGCTG
GGCAAGTAGGTCGGGAGCGAATCCTGATAGGCCAGCCGGAATGAGCCCGG
GCGTAGGACCGGACCGCGGGGAAGCGAGGGGGTTAAGCCCCCAAGGTGAG
CAAACCGCAATTCGAGGGGCCGGAGCATTTTTCGATGGGTACAGCAGCAG
GAGCCAAAAACGTGTTACGGTCAATGCACCGCGTCTCGAAGGGGAGAGTC
GCGGCCACGGGTACGACTCGTGGAGAAAGGCCCTTATTCAAGCCGCGAAA
ACCGTAGGCTTGGACGGGCAGCTTATCGGCAACGCCGAGAAGCACGCACC
CGTCGGTGACCCAAACAGGCCTAGCTCGGAGCTGTATAGCTTGGGCTACA
CAAGTGATGAGGTTCAGAGGGGCCTCCAGGCGTTCCACTTTGTGACTACA
GCCATCGTCCGCGAAGCCGACAAGGCAATCGTGAATAAATGCGAGACCGC
AAAGGAGATTCTTGCGGAACTCGACAGTGTACACAACCCGGAGTCGCAGG
GCTCGAAACAAGCCCTGATGGAAGAAGATGTTCAAATTCACGATCCCCGC
ACACAGCAACAGCAACCCTNTAACCCTTTTTCCCGCAGTCGTGAGTACAG
GAGCTCGAGCGTGTATAGATGCTCGACAGGGTTGCTGTTGCTGTGTGCGG
GGATCGTGAATCGAAACATCTTCTTCATGAGGGCTTGTTTCGAGCCCTGC
GACTCCGGGTTGTGTACTTTGTCGAGTTCCGCAAGAATTTCCTTTGCGGT
CTCGCATTTGTTCACGATTGCCTTGTCGGCTTCTCGGACGATGGCTGTAG
TCACAAAGTGGAACGCCTGGAGGCCCCTCTGAACCTCATCACTTGTGTAG
CCCAAGCTATACAGCTCCGAGCTAGGCCTGTTTGGGTCACCGACGGGTGC
GTGCTTCTCGGCGTTGCCGATAAGCTGCCCGTCCAAGCCTACGGTTTTCG
CGGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNTTTTTTTATTGATGTATCCGGGGTGTTGTTGCCCCA
CTGATGGTTAGTCACTTGCGTGAAGAACCAGGGAATGTGTTCGTGGGTCT
ACGGACATGGTTTGGATACATTAGCCATACGTACAAGTGTGACGCAGATG
GTGTAGAACCTTTTAGGTAGGGGTACGGTGATGATGCACCGGGACCCCCT
TTGTTGAGTGCAGCAGCCGCGCTGCCACTCTCTCTTTCTCCTCCTGCTTT
CCGAGCACGACAGCGTCCTGGGTACGGGCGTTGTCTCACCGTCTGAAGTT
AATACACTACACAAACAAGTCCCGATAAGTACGGGGAGTACGGCCGACAA
ACAGTCGTCGTCGTTGTGGTTGATGTTATTGTTGCTGCTGCTGTCGTCAC
TGTTGTGGGCAGAGCCCAGCAGGAGGATGAGTCCCACAAGCAGGAGGAAC
AGCGTCTTCATGATTCCTGCGAGATTCATGCTTGAGTAACGGAGACGCGA
TTTCCGGGGAATAGTCTAATCATGACCACTACTGATAGTGACCTGGTTGT
ATCTTGTTCGCCGGCAATATGGGCGGTTGGGACAAAAAAAATCCGCTGTC
GAAATCGGATATCTCATCAATGGCAAACCGCACCACCTGAAGAAGAAGCA
AACTCTGGAGAGTACGGCCGACGAACGAACGTGAGAAGGAACTTGGGGAT
GGATATCGTTAGAATTAACAGCCGTCTTATCTAAGACCTCCGCCCATCTA
TCTTTGCCCGCCGATCTACGCTACGTGTAGTTGAAACAAGGGCGCCCGGT
ACTGGTGGTACGACTATTTCCAGGGGGAGATCAAGATACAAGTATTGTAT
GATCGCGCTTGCTCTAGTGTGTTATTATTAATAGCATCGACCGCGCCAAC
CGGCTGACCAATTAAAAGACGTCAGTGCCAGCGGGTAAAAATCAAGGTCC
CTGGAAGGGAGCCGAAACTCGAAAAATGCGCAATGCGCTTGCGAATGCCA
ATACGACTCTCTCTACATGTTCTTTCACGTAGGCACACATCTCAGGTACA
CAAATGCCCTCGCTCGAATCTAGGAAGCCACTGATGCTAAGAGCGAAGGA
CAGCAAAGGGTTTTTTCAAGCCCAGCCGAAGCCAGGATATCGTGGTATGC
TGCATCTCCCAATTTGATAATCGTGCACTCCCAAGTGTCAGC

Coding sequence (CDS) from alignment at Scaffold_345:354122..359763-

>EsuBft108_34a-0001 ID=EsuBft108_34a-0001|Name=EsuBft108_34a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=774bp|location=Sequence derived from alignment at Scaffold_345:354122..359763- (Ectocarpus subulatus male Bft15b)
ATGTCTACGTCGGACAGCGGTTCCGTCGGAGGGCAGGGGGAAGAGACCTC
AGCCACGCAACAGCAGCACGCCGAGGATCCGGCGAATGCGAAGCTGGAGG
GACAGTTATCGCAGCTGATGAGCGTAGTGATGGAGTTGAAGAGGAAGGAG
CCTGGTGACGCCGTGGCGGGCGATGCCAGTAGGGGCAGCGGTGCTGCCGT
CCCAAGCCAGAGAGAGGCTCTGCCGCCTGGGGGCGGCGGGGCATTTTCCC
GGGAAACGGCCCGTGATGGGCGAAATCACCCGCGGGAAAGCAGCTGGGAC
AACATACCGGGAGCGAGTCCTGGGGTTCAAGCGAGAGTGGCGGCTGGCTG
GGCAAGTAGGTCGGGAGCGAATCCTGATAGGCCAGCCGGAATGAGCCCGG
GCGTAGGACCGGACCGCGGGGAAGCGAGGGGGTTAAGCCCCCAAGGCTTG
GACGGGCAGCTTATCGGCAACGCCGAGAAGCACGCACCCGTCGGTGACCC
AAACAGGCCTAGCTCGGAGCTGTATAGCTTGGGCTACACAAGTGATGAGG
TTCAGAGGGGCCTCCAGGCGTTCCACTTTGTGACTACAGCCATCGTCCGC
GAAGCCGACAAGGCAATCGTGAATAAATGCGAGACCGCAAAGGAGATTCT
TGCGGAACTCGACAGTCCCAAGCTATACAGCTCCGAGCTAGGCCTGTTTG
GGTCACCGACGGGTGCGTGCTTCTCGGCGTTGCCGATAAGCTGCCCGTCC
AAGCCTACGGTTTTCGCGGCTTNN