EsuBft108_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft108_2a-0001
Unique NameEsuBft108_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_345contigScaffold_345:50998..52079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6500.XP_005092035.1
ProteomeIdEsuBft108_2
Protein domainsCoil
Protein domainsIPR000477
Protein domainsPTHR25952
Ownerapollo_admin@sb-roscoff.fr
Noteuncharacterized transposon-derived protein os:caenorhabditis elegans gn: pe:5 sv:1 [Automatic annotation]
Nb exon1
Max annot lvl33208|Metazoa
Length1082
Hectar predicted targeting categoryother localisation
Evalue1.11e-20
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3D94V@33213|Bilateria
Date last modified2016-06-14
Date creation2016-06-14
DescriptionRibonuclease H protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft108_2aEsuBft108_2aEctocarpus subulatus male Bft15bgeneScaffold_345 50998..52079 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_2a-0001-exonEsuBft108_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_345 50998..52079 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_2a-0001-cdsEsuBft108_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_345 50998..52026 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_2a-0001-exonagat-five_prime_utr-541Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_345 52027..52079 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_2a-0001EsuBft108_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_345 50998..52026 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft108_2a-0001 ID=EsuBft108_2a-0001|Name=EsuBft108_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1082bp|location=Sequence derived from alignment at Scaffold_345:50998..52079- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGTCGGCGGGGAAGAAGACGACGGTGGTGACGGACGCGGAGGCCTTGTGG
GCCATGCTCTACGCTGACGACGCGGCCATCGTCTCGATCTCGGCGGAGAG
TCTCGAGAAGATGATGTCGGTCATCGTGCGCGTGGCCGGCCTGTTCGGAC
TGATGGTGTCGGAGCCAAAGACGGAGATCATGTGCATGCTGCCAAAAGGG
ATCGAGGAACGCCCGTTCACGGTCAGCGCCGCCGGCCAGACGTACAAGCA
TACAGATCGGTTTGGGTACCTCGGACGTACCATGTTCGCGGACGGGAAGG
CCGACCGGGAGATCACGAGCCGCTGCTGCCGAGCGTGGAAGTGCTACCGC
CGGAACAGTGCTTCGATGTACGACAGGCGACGGGCCGACCGCCAGCTCAA
GATCCGGCTTCTCCAGGCTGAAGTGGTGGAGACTCTCCTGTATGGGTGCG
CCTCGTGGAGCCTAACAGCGGAGCACTACACGAAGCTCAATGGGACCCAC
CGCCAGTTCCTCACACGGTGCATCGGCTGGAGCAAGCGGAAACGCTCAGA
CCGCCCCCTGTCCTATGCCCAGGCCCTCATCCAGGCAGGCTGCGAGGAAA
CCATCGAGGCCACCGTGCGCAAACGGAGACTGTGTTTCGCGGGCAATATT
ATGCGCATGGAGGACAGCCGCCTCCCTAAGCGCATGCTGTTAGGAGCGAT
GGCGGGGGGCGTGGGATACCGGGGCGGGCAGGAGAGCGACTGGGTGTCTC
GTCTAGGAGAGGACCTCGTGGCCTTCAACATGGGAGACGAAAAGGAAGGG
GGGAAATGGAAAGAGAGCGCCAAGGACCCGGAGGTGTGGTACAACAAGGT
CGAGGACGGGGCGGCATGGCTCATGAGGAAATGGCACAGGCAGGAGGCGG
AAGCGTCCGCGAAGCGCCAGCGCGCGAGGGAAGCAGAAGCAGAGAGTACG
GCCATCTCAGGACCGAAGAGAAAGAGAGTCGGGGAAGCGGCGGTGGGGGG
GAAGAAACGGCGACCGGGCACTGCCGTAGAAGCGAGTAGGGCGACCGAGG
CAGCACTTGTGGCGAACTATGTACCCGACTGA
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protein sequence of EsuBft108_2a-0001

>EsuBft108_2 ID=EsuBft108_2|Name=EsuBft108_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=342bp
MLYADDAAIVSISAESLEKMMSVIVRVAGLFGLMVSEPKTEIMCMLPKGI
EERPFTVSAAGQTYKHTDRFGYLGRTMFADGKADREITSRCCRAWKCYRR
NSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHR
QFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGNIM
RMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGG
KWKESAKDPEVWYNKVEDGAAWLMRKWHRQEAEASAKRQRAREAEAESTA
ISGPKRKRVGEAAVGGKKRRPGTAVEASRATEAALVANYVPD
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mRNA from alignment at Scaffold_345:50998..52079-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft108_2a-0001 ID=EsuBft108_2a-0001|Name=EsuBft108_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1082bp|location=Sequence derived from alignment at Scaffold_345:50998..52079- (Ectocarpus subulatus male Bft15b)
GGTCGGCGGGGAAGAAGACGACGGTGGTGACGGACGCGGAGGCCTTGTGG
GCCATGCTCTACGCTGACGACGCGGCCATCGTCTCGATCTCGGCGGAGAG
TCTCGAGAAGATGATGTCGGTCATCGTGCGCGTGGCCGGCCTGTTCGGAC
TGATGGTGTCGGAGCCAAAGACGGAGATCATGTGCATGCTGCCAAAAGGG
ATCGAGGAACGCCCGTTCACGGTCAGCGCCGCCGGCCAGACGTACAAGCA
TACAGATCGGTTTGGGTACCTCGGACGTACCATGTTCGCGGACGGGAAGG
CCGACCGGGAGATCACGAGCCGCTGCTGCCGAGCGTGGAAGTGCTACCGC
CGGAACAGTGCTTCGATGTACGACAGGCGACGGGCCGACCGCCAGCTCAA
GATCCGGCTTCTCCAGGCTGAAGTGGTGGAGACTCTCCTGTATGGGTGCG
CCTCGTGGAGCCTAACAGCGGAGCACTACACGAAGCTCAATGGGACCCAC
CGCCAGTTCCTCACACGGTGCATCGGCTGGAGCAAGCGGAAACGCTCAGA
CCGCCCCCTGTCCTATGCCCAGGCCCTCATCCAGGCAGGCTGCGAGGAAA
CCATCGAGGCCACCGTGCGCAAACGGAGACTGTGTTTCGCGGGCAATATT
ATGCGCATGGAGGACAGCCGCCTCCCTAAGCGCATGCTGTTAGGAGCGAT
GGCGGGGGGCGTGGGATACCGGGGCGGGCAGGAGAGCGACTGGGTGTCTC
GTCTAGGAGAGGACCTCGTGGCCTTCAACATGGGAGACGAAAAGGAAGGG
GGGAAATGGAAAGAGAGCGCCAAGGACCCGGAGGTGTGGTACAACAAGGT
CGAGGACGGGGCGGCATGGCTCATGAGGAAATGGCACAGGCAGGAGGCGG
AAGCGTCCGCGAAGCGCCAGCGCGCGAGGGAAGCAGAAGCAGAGAGTACG
GCCATCTCAGGACCGAAGAGAAAGAGAGTCGGGGAAGCGGCGGTGGGGGG
GAAGAAACGGCGACCGGGCACTGCCGTAGAAGCGAGTAGGGCGACCGAGG
CAGCACTTGTGGCGAACTATGTACCCGACTGA
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Coding sequence (CDS) from alignment at Scaffold_345:50998..52079-

>EsuBft108_2a-0001 ID=EsuBft108_2a-0001|Name=EsuBft108_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1029bp|location=Sequence derived from alignment at Scaffold_345:50998..52079- (Ectocarpus subulatus male Bft15b)
ATGCTCTACGCTGACGACGCGGCCATCGTCTCGATCTCGGCGGAGAGTCT
CGAGAAGATGATGTCGGTCATCGTGCGCGTGGCCGGCCTGTTCGGACTGA
TGGTGTCGGAGCCAAAGACGGAGATCATGTGCATGCTGCCAAAAGGGATC
GAGGAACGCCCGTTCACGGTCAGCGCCGCCGGCCAGACGTACAAGCATAC
AGATCGGTTTGGGTACCTCGGACGTACCATGTTCGCGGACGGGAAGGCCG
ACCGGGAGATCACGAGCCGCTGCTGCCGAGCGTGGAAGTGCTACCGCCGG
AACAGTGCTTCGATGTACGACAGGCGACGGGCCGACCGCCAGCTCAAGAT
CCGGCTTCTCCAGGCTGAAGTGGTGGAGACTCTCCTGTATGGGTGCGCCT
CGTGGAGCCTAACAGCGGAGCACTACACGAAGCTCAATGGGACCCACCGC
CAGTTCCTCACACGGTGCATCGGCTGGAGCAAGCGGAAACGCTCAGACCG
CCCCCTGTCCTATGCCCAGGCCCTCATCCAGGCAGGCTGCGAGGAAACCA
TCGAGGCCACCGTGCGCAAACGGAGACTGTGTTTCGCGGGCAATATTATG
CGCATGGAGGACAGCCGCCTCCCTAAGCGCATGCTGTTAGGAGCGATGGC
GGGGGGCGTGGGATACCGGGGCGGGCAGGAGAGCGACTGGGTGTCTCGTC
TAGGAGAGGACCTCGTGGCCTTCAACATGGGAGACGAAAAGGAAGGGGGG
AAATGGAAAGAGAGCGCCAAGGACCCGGAGGTGTGGTACAACAAGGTCGA
GGACGGGGCGGCATGGCTCATGAGGAAATGGCACAGGCAGGAGGCGGAAG
CGTCCGCGAAGCGCCAGCGCGCGAGGGAAGCAGAAGCAGAGAGTACGGCC
ATCTCAGGACCGAAGAGAAAGAGAGTCGGGGAAGCGGCGGTGGGGGGGAA
GAAACGGCGACCGGGCACTGCCGTAGAAGCGAGTAGGGCGACCGAGGCAG
CACTTGTGGCGAACTATGTACCCGACTGA
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