EsuBft108_29a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft108_29a-0001
Unique NameEsuBft108_29a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_345contigScaffold_345:281248..282191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LKF8
ProteomeIdEsuBft108_29
Protein domainsIPR002889
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length68
Hectar predicted targeting categoryother localisation
Evalue2.59e-25
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota
Ec32 ortholog descriptionCarbohydrate-binding WSC
Ec32 orthologEc-16_002480.1
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K20290
DescriptionRNA polymerase II transcription regulator recruiting activity
COG categoryADK
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft108_29aEsuBft108_29aEctocarpus subulatus male Bft15bgeneScaffold_345 281248..282191 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_29a-0001-exonagat-exon-105073Ectocarpus subulatus male Bft15bexonScaffold_345 281248..281577 -
EsuBft108_29a-0001-exonEsuBft108_29a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_345 281838..282191 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_29a-0001-cdsEsuBft108_29a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_345 281248..281577 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_29a-0001EsuBft108_29Ectocarpus subulatus male Bft15bpolypeptideScaffold_345 281248..282191 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft108_29a-0001 ID=EsuBft108_29a-0001|Name=EsuBft108_29a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=684bp|location=Sequence derived from alignment at Scaffold_345:281248..282191- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTTCACCACATCCACCACCACCTCCTCGACCTCAACCTCAATCTC
CACCACCGGCAACAACGACGCTCTTCCCGTTCACCAGCTGCCCGATATGA
ACTACGACGCCGCCACCGACGAGGAAGGCCACACAATCGGTGTTCTGGCT
CCTTCGTCGTCGAAGCCAGTCGTTCTGGAAGAACCGAACGAGGACAACGG
GGTTGGCTCGCCCATGGCCATCACTGCCGCCCCCGAGCACGTTGGCTGCT
TCACGTTGACCCGGATGGAGGTGTTCCTTCGCAACCGGATCATAGACAAC
CCCAGAGGTTCGACACTCGTGCGGGTGCACAGCAAGGCCGACATGACCCC
CCTGGAGTGTGCTGGTATCTGTGCGGGTGGGGGAAGCGATGGCTTCGCGG
TCAGCAGAGGCGACCTGTTCACCTGCTTGTCGGAAGGAGACTCTGGTGGT
TTCCTCCGCGGCAGGGGTAATGGTGTGTGCAACTCCCCCTGCACCGGCGA
CGCTTCACAAACGTGCGGAGGACATGCCGCGTTTGACGCGTACAAGATAG
TCTCGAGGGGAGACGACGAGAACGCCGACGGCATCGCCTTGGGCGACTCA
CCCTCCACCACCGATACCGCCGCAACCTCCACAACTGCCCGTAAGACAAG
GGAATGCGGGGGTTTCACACTCACTGTACCGTAG
back to top

protein sequence of EsuBft108_29a-0001

>EsuBft108_29 ID=EsuBft108_29|Name=EsuBft108_29a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=227bp
MSFTTSTTTSSTSTSISTTGNNDALPVHQLPDMNYDAATDEEGHTIGVLA
PSSSKPVVLEEPNEDNGVGSPMAITAAPEHVGCFTLTRMEVFLRNRIIDN
PRGSTLVRVHSKADMTPLECAGICAGGGSDGFAVSRGDLFTCLSEGDSGG
FLRGRGNGVCNSPCTGDASQTCGGHAAFDAYKIVSRGDDENADGIALGDS
PSTTDTAATSTTARKTRECGGFTLTVP
back to top

mRNA from alignment at Scaffold_345:281248..282191-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft108_29a-0001 ID=EsuBft108_29a-0001|Name=EsuBft108_29a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=944bp|location=Sequence derived from alignment at Scaffold_345:281248..282191- (Ectocarpus subulatus male Bft15b)
ATGAGCTTCACCACATCCACCACCACCTCCTCGACCTCAACCTCAATCTC
CACCACCGGCAACAACGACGCTCTTCCCGTTCACCAGCTGCCCGATATGA
ACTACGACGCCGCCACCGACGAGGAAGGCCACACAATCGGTGTTCTGGCT
CCTTCGTCGTCGAAGCCAGTCGTTCTGGAAGAACCGAACGAGGACAACGG
GGTTGGCTCGCCCATGGCCATCACTGCCGCCCCCGAGCACGTTGGCTGCT
TCACGTTGACCCGGATGGAGGTGTTCCTTCGCAACCGGATCATAGACAAC
CCCAGAGGTTCGACACTCGTGCGGGTGCACAGCAAGGCCGACATGACCCC
CCTGGTAAGCTGGTGGTCCCGTCAACTCAGCGACCGATGCCCGACTGCGC
TGCATGCTGAGTCCCACCTAGACACGCCGTGCATTGCTCGCGAGGAATCA
AGCTGTTCCTAGGCTTACAAACTGTTGGTCGTGGGTTGATAGCGCGACCA
TTCTCCGCGCGATCAAAGAGTTCTTCTTACACTCGACCCTGCTGTCTTTT
CACACAATACGCCTCTGTTGTCCTCGCTGATTGGCCCTACTCCCCGTTCC
CCCATCTCTCTCAGGAGTGTGCTGGTATCTGTGCGGGTGGGGGAAGCGAT
GGCTTCGCGGTCAGCAGAGGCGACCTGTTCACCTGCTTGTCGGAAGGAGA
CTCTGGTGGTTTCCTCCGCGGCAGGGGTAATGGTGTGTGCAACTCCCCCT
GCACCGGCGACGCTTCACAAACGTGCGGAGGACATGCCGCGTTTGACGCG
TACAAGATAGTCTCGAGGGGAGACGACGAGAACGCCGACGGCATCGCCTT
GGGCGACTCACCCTCCACCACCGATACCGCCGCAACCTCCACAACTGCCC
GTAAGACAAGGGAATGCGGGGGTTTCACACTCACTGTACCGTAG
back to top

Coding sequence (CDS) from alignment at Scaffold_345:281248..282191-

>EsuBft108_29a-0001 ID=EsuBft108_29a-0001|Name=EsuBft108_29a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=684bp|location=Sequence derived from alignment at Scaffold_345:281248..282191- (Ectocarpus subulatus male Bft15b)
ATGAGCTTCACCACATCCACCACCACCTCCTCGACCTCAACCTCAATCTC
CACCACCGGCAACAACGACGCTCTTCCCGTTCACCAGCTGCCCGATATGA
ACTACGACGCCGCCACCGACGAGGAAGGCCACACAATCGGTGTTCTGGCT
CCTTCGTCGTCGAAGCCAGTCGTTCTGGAAGAACCGAACGAGGACAACGG
GGTTGGCTCGCCCATGGCCATCACTGCCGCCCCCGAGCACGTTGGCTGCT
TCACGTTGACCCGGATGGAGGTGTTCCTTCGCAACCGGATCATAGACAAC
CCCAGAGGTTCGACACTCGTGCGGGTGCACAGCAAGGCCGACATGACCCC
CCTGGAGTGTGCTGGTATCTGTGCGGGTGGGGGAAGCGATGGCTTCGCGG
TCAGCAGAGGCGACCTGTTCACCTGCTTGTCGGAAGGAGACTCTGGTGGT
TTCCTCCGCGGCAGGGGTAATGGTGTGTGCAACTCCCCCTGCACCGGCGA
CGCTTCACAAACGTGCGGAGGACATGCCGCGTTTGACGCGTACAAGATAG
TCTCGAGGGGAGACGACGAGAACGCCGACGGCATCGCCTTGGGCGACTCA
CCCTCCACCACCGATACCGCCGCAACCTCCACAACTGCCCGTAAGACAAG
GGAATGCGGGGGTTTCACACTCACTGTACCGTAG
back to top