EsuBft108_28a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft108_28a-0001
Unique NameEsuBft108_28a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_345contigScaffold_345:277099..279300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LKF2
ProteomeIdEsuBft108_28
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length84
Hectar predicted targeting categoryother localisation
Evalue3.62e-155
EggNOG OGsCOG0449@1|root,KOG1268@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameDUG3
KEGG rclassRC00408
KEGG koko:K01836,ko:K14262,ko:K18802
KEGG ReactionR08193
KEGG Pathwayko00520,ko01100,ko01130,map00520,map01100,map01130
GOsGO:0003674,GO:0003824,GO:0004044,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006518,GO:0006575,GO:0006749,GO:0006751,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008242,GO:0009056,GO:0009987,GO:0016740,GO:0016757,GO:0016763,GO:0016787,GO:0019538,GO:0032991,GO:0034641,GO:0042219,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044273,GO:0044424,GO:0044464,GO:0051186,GO:0051187,GO:0061672,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368
EC5.4.2.3
Descriptionglutamine-fructose-6-phosphate transaminase (isomerizing) activity
COG categoryM
BRITEko00000,ko00001,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft108_28aEsuBft108_28aEctocarpus subulatus male Bft15bgeneScaffold_345 277099..279300 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_28a-0001-exonEsuBft108_28a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_345 277099..277680 -
EsuBft108_28a-0001-exonagat-exon-105071Ectocarpus subulatus male Bft15bexonScaffold_345 278009..278110 -
EsuBft108_28a-0001-exonagat-exon-105072Ectocarpus subulatus male Bft15bexonScaffold_345 279142..279300 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_28a-0001-cdsEsuBft108_28a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_345 277099..277680 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_28a-0001EsuBft108_28Ectocarpus subulatus male Bft15bpolypeptideScaffold_345 277099..279300 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft108_28a-0001 ID=EsuBft108_28a-0001|Name=EsuBft108_28a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=843bp|location=Sequence derived from alignment at Scaffold_345:277099..279300- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCCTCCTCCAAACCCTCGTTGTACAGATTCACCAGGGGACTGTAAA
TGCCAAGACCTTCGTCCGATGGTGGAGGGCACGTCAGCTCACCCTCGTGG
ACGCGTCAACCCTCAAGCTGTGTAAAATATCGCGCAGAGGACAGGAGAAG
TCTTGCCAGTGGGACTTCGATGCGGGCAGCTCCCTAGCACTGGACGCGTG
GATTTCTCTTCTGGAGGGTGTCACAACGCTTGATTACCAGAAGGAGGCCG
ATTTTTGGGGGGACACTCCGCGGGCTGGCAACCCGGGTGACTCTTTCAAG
TTCTCGATCGAGCTCGGGCCGTTCACGTTCGCCCCCACGCCCGCCTTCCG
CGGCGACAGCATTTCTGTCGATGACTACCCGCTCATTCCGGGTCAATTCT
TGTCGACGGCACCGGTCGTCGATTCCGCTAACCTGGAGGTGACGGAGGTC
GGGGACGTGATTCTTCGGCAGGGCGACATCCCGGCCTACCCAACAAACCC
CAAACCGCTCTGGGCCCACCGTGCTACGGGGTCGGTCGGGGGTACTGCCA
AGGGGGGGCTAGGGTGTGCTGTGGAGGCATGGTGGGAGAGGGCCACCAAC
GGTGGCCAAGACATGCGCGTCCCCGTCCATCTGGCCGTGAAGAACGGCAG
GTGGAGGGTCGGCCGGGGGTGGATGTGCACCTTGGGCCGAAGCCCCAGAG
TGGCTGGAGGGTGGAGGGTCCACCTCCCGTGGGACTCCCACGGGAAGGCC
CTCAAGGCGGCGTCCCTCCAGCTTCGCGACGGCAGTGCCGTGATGGCCAC
CGAAGATGGCCACATCCTGTGGAGCTCTTCGTCCTCGCCGTAA
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protein sequence of EsuBft108_28a-0001

>EsuBft108_28 ID=EsuBft108_28|Name=EsuBft108_28a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=280bp
MILLQTLVVQIHQGTVNAKTFVRWWRARQLTLVDASTLKLCKISRRGQEK
SCQWDFDAGSSLALDAWISLLEGVTTLDYQKEADFWGDTPRAGNPGDSFK
FSIELGPFTFAPTPAFRGDSISVDDYPLIPGQFLSTAPVVDSANLEVTEV
GDVILRQGDIPAYPTNPKPLWAHRATGSVGGTAKGGLGCAVEAWWERATN
GGQDMRVPVHLAVKNGRWRVGRGWMCTLGRSPRVAGGWRVHLPWDSHGKA
LKAASLQLRDGSAVMATEDGHILWSSSSSP
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mRNA from alignment at Scaffold_345:277099..279300-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft108_28a-0001 ID=EsuBft108_28a-0001|Name=EsuBft108_28a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2202bp|location=Sequence derived from alignment at Scaffold_345:277099..279300- (Ectocarpus subulatus male Bft15b)
ATGATCCTCCTCCAAACCCTCGTTGTACAGATTCACCAGGGGACTGTAAA
TGCCAAGACCTTCGTCCGATGGTGGAGGGCACGTCAGCTCACCCTCGTGG
ACGCGTCAACCCTCAAGCTGTGTAAAATATCGCGCAGAGGACAGGAGAAG
TCTTGCCAGGTATGTAACTTGCCACCACCGCCCTTAGTTTGCTTTCCCCC
ATGTGTTGCACCCAACAAACTCATTTGAGGTTGAAAACAAACGAATCTCA
TTATTGCTCTCATGGAGCTCGCATCAGGCGTTCATGCAGTAGAGACACGT
GAGGTAGAATCTAGGCCCGACTTGTGATTGATGCTCAACAAACAGTCCCT
TCCTCCCTCTCAAAAAACTCCATGGGAACACAGGCCATGTACTCGGAAAG
CCTGTCTGGGCAGTCAAGAGCACAGACATAGGTGTGGAATACTGTGCGGC
AAATCACCCCCATGCCTTGCACAGCAGTCAAGTATTCGCACCTCTCTCGT
CCTGTTTTTCCCTGCCATTTTTTCATAACCCTCTCTGCGTGTTATTCTCG
TTTGACGTGCTGCCCGGCAACCCTTAGGACATGCCCTTGGATAGTTCGAC
CGAGGTGGTACGGGTCGAGGGTAAGCACGGGAGGCCCAGGAAGGACGGAC
GCTCCGTGTTCCGTGTTTCGACGGGATCTCCCCGAGGCCTGAAGAACAAA
GTGGTGAGAACAGGGAGTTTTCCGTGCGGTACACCTCGTTCACGTCTCGG
ACACTAATCTGTAGTCGGTAAATGGTCACGGTGGTACAGGATGCTGTGCT
CTCTCGCGTGCTCTCGAGGCAGCTAGCGTGAGATGCTCTTGTCGTTTGAC
GCTCGCCCTCGTCGTTTCAGGATCAACCACGAATATGATCAGTCGCAACG
AAGTAGTGTTCGTGTTCCTGACAAGGTGTGCCCATTTTCCTTGGAAAGTA
CCACCGTTTGTTTTCCTACAAGAGGCATCTGTGGGCAAGGTTTTCGCTGC
TAAACGTGTTGCAGTAACGATTCAAGCCAGAGCTACAATAGCTTATGCTG
ACAAAACCATCTGTAGCCGTTTGCTCTCCGTCACGGCTGCTGTTCGTCCT
GACATTGATGGTCCTTTTTCCCATCAACAGGGTGTACAACTCACACGCCC
TTGTCTCGCACTGCTGTTGTTGCTAACGATACCTTCACAGTGGGACTTCG
ATGCGGGCAGCTCCCTAGCACTGGACGCGTGGATTTCTCTTCTGGAGGGT
GTCACAACGCTTGATTACCAGAAGGAGGCCGATTTTTGGGGGGTAAGTAC
TCGTTGTTGTTGTTATTTAACTATCATGGTCTACGTGTTTGGGGGCGGCG
GCGGCTTGGCAATGCTGTCGTTGTCGCCGTCGGTGTTGGCGTTGCAGTTG
CCGCTCTTCAAAACCTTGTCGCTTCTGTGTCTGTATTCTATCCGGTAGCC
AACGGTACGGTAGAGTTCCTCCTACCACGGCACGGAAGCGTGCGGTAACA
ATACTAGCCTTCAGTTCCACGAAGCACCTCACTAGCAGACAAACCCGATC
GCCATGTCTTCCGTTCCATGCACATATCCAACTCTGCAACATGCTCTCGT
GCGACACGTAACTATTGCAGGACACTCCGCGGGCTGGCAACCCGGGTGAC
TCTTTCAAGTTCTCGATCGAGCTCGGGCCGTTCACGTTCGCCCCCACGCC
CGCCTTCCGCGGCGACAGCATTTCTGTCGATGACTACCCGCTCATTCCGG
GTCAATTCTTGTCGACGGCACCGGTCGTCGATTCCGCTAACCTGGAGGTG
ACGGAGGTCGGGGACGTGATTCTTCGGCAGGGCGACATCCCGGCCTACCC
AACAAACCCCAAACCGCTCTGGGCCCACCGTGCTACGGGGTCGGTCGGGG
GTACTGCCAAGGGGGGGCTAGGGTGTGCTGTGGAGGCATGGTGGGAGAGG
GCCACCAACGGTGGCCAAGACATGCGCGTCCCCGTCCATCTGGCCGTGAA
GAACGGCAGGTGGAGGGTCGGCCGGGGGTGGATGTGCACCTTGGGCCGAA
GCCCCAGAGTGGCTGGAGGGTGGAGGGTCCACCTCCCGTGGGACTCCCAC
GGGAAGGCCCTCAAGGCGGCGTCCCTCCAGCTTCGCGACGGCAGTGCCGT
GATGGCCACCGAAGATGGCCACATCCTGTGGAGCTCTTCGTCCTCGCCGT
AA
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Coding sequence (CDS) from alignment at Scaffold_345:277099..279300-

>EsuBft108_28a-0001 ID=EsuBft108_28a-0001|Name=EsuBft108_28a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=843bp|location=Sequence derived from alignment at Scaffold_345:277099..279300- (Ectocarpus subulatus male Bft15b)
ATGATCCTCCTCCAAACCCTCGTTGTACAGATTCACCAGGGGACTGTAAA
TGCCAAGACCTTCGTCCGATGGTGGAGGGCACGTCAGCTCACCCTCGTGG
ACGCGTCAACCCTCAAGCTGTGTAAAATATCGCGCAGAGGACAGGAGAAG
TCTTGCCAGTGGGACTTCGATGCGGGCAGCTCCCTAGCACTGGACGCGTG
GATTTCTCTTCTGGAGGGTGTCACAACGCTTGATTACCAGAAGGAGGCCG
ATTTTTGGGGGGACACTCCGCGGGCTGGCAACCCGGGTGACTCTTTCAAG
TTCTCGATCGAGCTCGGGCCGTTCACGTTCGCCCCCACGCCCGCCTTCCG
CGGCGACAGCATTTCTGTCGATGACTACCCGCTCATTCCGGGTCAATTCT
TGTCGACGGCACCGGTCGTCGATTCCGCTAACCTGGAGGTGACGGAGGTC
GGGGACGTGATTCTTCGGCAGGGCGACATCCCGGCCTACCCAACAAACCC
CAAACCGCTCTGGGCCCACCGTGCTACGGGGTCGGTCGGGGGTACTGCCA
AGGGGGGGCTAGGGTGTGCTGTGGAGGCATGGTGGGAGAGGGCCACCAAC
GGTGGCCAAGACATGCGCGTCCCCGTCCATCTGGCCGTGAAGAACGGCAG
GTGGAGGGTCGGCCGGGGGTGGATGTGCACCTTGGGCCGAAGCCCCAGAG
TGGCTGGAGGGTGGAGGGTCCACCTCCCGTGGGACTCCCACGGGAAGGCC
CTCAAGGCGGCGTCCCTCCAGCTTCGCGACGGCAGTGCCGTGATGGCCAC
CGAAGATGGCCACATCCTGTGGAGCTCTTCGTCCTCGCCGTAA
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