EsuBft108_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft108_13a-0001
Unique NameEsuBft108_13a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_345contigScaffold_345:121786..124349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft108_13
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length222
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft108_13aEsuBft108_13aEctocarpus subulatus male Bft15bgeneScaffold_345 121786..124349 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_13a-0001EsuBft108_13Ectocarpus subulatus male Bft15bpolypeptideScaffold_345 123758..123946 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_13a-0001-exonEsuBft108_13a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_345 121786..123980 -
EsuBft108_13a-0001-exonagat-exon-105007Ectocarpus subulatus male Bft15bexonScaffold_345 124317..124349 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_13a-0001-exonagat-three_prime_utr-843Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_345 121786..123757 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_13a-0001-cdsEsuBft108_13a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_345 123758..123946 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_13a-0001-exonagat-five_prime_utr-528Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_345 123947..123980 -
EsuBft108_13a-0001-exonagat-five_prime_utr-529Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_345 124317..124349 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft108_13a-0001 ID=EsuBft108_13a-0001|Name=EsuBft108_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2228bp|location=Sequence derived from alignment at Scaffold_345:121786..124349- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTCCGCCTCCACCCCCACCGCAAGCCTACCACGAAAAAAAAAAAACTCAC
AACGCTGCTAAACAGTCATGGAGAACGATGGAGGTCAACGTACTCATGAT
GAGAAGGCTGGCCCGGTTCAGTTAGTTGCCGGGTGTTGTTCATGGCAACA
CGAGTCCTCCGGCGAGGGCCGCTCCCCTCGCCAGAGTTCCGGTGAACACA
CAGCACGAAGGCCAAGGACCTCCTCCTCCTACTACCGCAGCCCCGCGGTT
GAGTGATACGCGTCGCAGTCATCAACGGAGTCGATCGTCCGCGACAGACG
CATCGGTCCACAAGATGCACGCGCAGCAGCTCCTCACGCTCCCTCGCTGC
TTGGAGCATCCCTGACCCCATCACCTCCGCCTCCGCCTGTGCAGCACTGC
TAAGATCTATGCCGCTCGCAGCATCGCCGTCATCCTCGTCACGCTGACTT
GGTGTGTAACTCAAGAGCATGTAGAACGGTATGCTGCGGTTCAAATGGCG
CAAATGCACCATATCGACAGCATGCATTGCACCGGGTCTGGCGTGCAGTG
GCGATTGGCTTAACTGTCTTGCGGTACTATAGCTGGCTCGCCATGATAGT
GTGTATCACGGCCGAGGTTGTGGGTGCATAGATAGCTAGCCTCACGGGCT
GGTGCGGCATGATGTAGTGTCCAGACAACGTCGGAGTATCTCGGGGAGTA
TTTTTTTTTTTTTGGTCTTCACTTCAAATCAGCGCTCATGGCACTAGTGC
CGTTTACTCCAACCCGTCCAACCCGTGGTCACACAGAAGAGCCCCTCTCT
ACCCTCCCCTCCTGCGGTACTTTGCCTTCGATTTTCAATGCGAGAAGAGT
TCAGCACTCTCTTCCCTCTGTGTACAGGCGAACTATGTAGCGCTATCCAC
TAGGCCAGGAGCGGAAGCGAGAGGAAAACTCACTTTGTAAGAAAAGCTCG
CTTACGCCGGGATTCGAACCCCTGACCTGACCTCTACTAGTCTAGAAGGT
TTCGAGGTTACCAATTAGACCACCGGGGCAACCGGCAATACACCTGAAAC
NTTCGATTTTCAATGCGAGAAGAGTTCAGCACTCTCTTCCCTCTGTGTAC
AGGCGAACTATGTAGCGCTATCCACTAGGCCAGGAGCGGAAGCGAGAGGA
AAACTCACTTTGTAAGAAAAGCTCGCTTACGCCGGGATTCGAACCCCTGA
CCTGACCTCTACTAGTCTAGAAGGTTTCGAGGTTACCAATTAGACCACCG
GGGCAACCGGCAATACACCTGAAACTGTTCCCAAAAAGATAGATGCGAGC
AAGATGGAATTCGATCTTTTCTGCGGTCTTTGAGGGCAATTCGTACAAGC
GAAAGATCGATTCCTAAAGATCCAGCGGTCTTAGGCGCTCGGGTGGATAA
CAAAGATCGAAATCAAATCGAATTCCGATGTTCGCAAACACCGTAAAATA
TTTGGGCCGTTTGCATCATTCCCAATTTTTGTTCCAAAGTTTCCATAGAC
TATGCTGCCTTTCTTCCCCTCGCTGCCTCGGCAAGGTTTTGCGTAGGCAT
GACCCATAGCGATGGGGGGGGTCTTTCTAGCGAGCAGGGCTAGACTCATC
CTCAGGGGACCGATACCTTCTTGCTGCAGCGCACCCGCCGCGAGGCGTGC
GTCGTGGTGGAGTTGGGTCGGCACTGGTGCGTCTAGTACAAAGGTGCAGA
TGCGCGGGCCTCCAGGCCGTCGGTGTAGGCAGCAATGCCCATCTCATCTT
TGTGCGCGGAGGCAGACGTCATCAGAAAGGTGGACGGGCACTATGTACAC
AGCCCTAGGTTTGCTAGAGGGAGCTGTACTGTCGCAGTAACCTGGTTTTG
TTATCAAAGGAGGAGGGGACAGGTGGTGACGAGCTGATTGGGCTGGTTGA
CCCTTCGGCGCGAGAATCTTCAGACCAAGAACCCTGATTGCAACGAGGGA
GAAAGCGGGGACCCGACTGGGAAGGATAGCAACGAGACCGTGTACGAAGC
GGAGCGGGTCGAGTTTGGTCGTGCTAGGATCGACCACAGCGGCACCGGAG
CAGCGGCACCGGAGCAGCGGAACCGGACCATGCGGACGGCATCGAACCGT
GGCGCACGGACAAACATCTCTTGTATTGTCAATTATTTTCCCGTTTTTTC
TCCTGAATACAGGTGTTGGGTGTGTGTGATGACGTCACTGGTTTTATAGA
GAGACGCGGCAGAGATGGCGCGGATAAC
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protein sequence of EsuBft108_13a-0001

>EsuBft108_13 ID=EsuBft108_13|Name=EsuBft108_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=62bp
MENDGGQRTHDEKAGPVQLVAGCCSWQHESSGEGRSPRQSSGEHTARRPR
TSSSYYRSPAVE
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mRNA from alignment at Scaffold_345:121786..124349-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft108_13a-0001 ID=EsuBft108_13a-0001|Name=EsuBft108_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2564bp|location=Sequence derived from alignment at Scaffold_345:121786..124349- (Ectocarpus subulatus male Bft15b)
TTCCGCCTCCACCCCCACCGCAAGCCTACCACGGTCGCCCCGGTGGTCTA
GTGGTTAGCCTCGCAGCCTGCTAAGGGCCAGGTCATGGGTACGAGTCCCG
ACAGAGTGAGTTTTTTCTCGCTTTTTAAATCCTGGTCTCCGTTGGAAGCG
ACGCACTGCAAAGAAAGCTCGTTGTTAGTAAACTTGATGGACTTCATAAG
TCGCGAGGGAAGGGATTGCTGTACCCTTCTCGCGATAAAAACATCCCAGG
CAGGAACCGCAGGAAGGGGTCCAACCCCCCCCTCCCATGTGACCCCGGTT
GGGTCGTCTAGCTGGTAGAAGTGGAGGATAGGGGCCAGAGGGGCAGACAA
CAGAGTCCAATGATGGGAGAAAAAAAAAAAACTCACAACGCTGCTAAACA
GTCATGGAGAACGATGGAGGTCAACGTACTCATGATGAGAAGGCTGGCCC
GGTTCAGTTAGTTGCCGGGTGTTGTTCATGGCAACACGAGTCCTCCGGCG
AGGGCCGCTCCCCTCGCCAGAGTTCCGGTGAACACACAGCACGAAGGCCA
AGGACCTCCTCCTCCTACTACCGCAGCCCCGCGGTTGAGTGATACGCGTC
GCAGTCATCAACGGAGTCGATCGTCCGCGACAGACGCATCGGTCCACAAG
ATGCACGCGCAGCAGCTCCTCACGCTCCCTCGCTGCTTGGAGCATCCCTG
ACCCCATCACCTCCGCCTCCGCCTGTGCAGCACTGCTAAGATCTATGCCG
CTCGCAGCATCGCCGTCATCCTCGTCACGCTGACTTGGTGTGTAACTCAA
GAGCATGTAGAACGGTATGCTGCGGTTCAAATGGCGCAAATGCACCATAT
CGACAGCATGCATTGCACCGGGTCTGGCGTGCAGTGGCGATTGGCTTAAC
TGTCTTGCGGTACTATAGCTGGCTCGCCATGATAGTGTGTATCACGGCCG
AGGTTGTGGGTGCATAGATAGCTAGCCTCACGGGCTGGTGCGGCATGATG
TAGTGTCCAGACAACGTCGGAGTATCTCGGGGAGTATTTTTTTTTTTTTG
GTCTTCACTTCAAATCAGCGCTCATGGCACTAGTGCCGTTTACTCCAACC
CGTCCAACCCGTGGTCACACAGAAGAGCCCCTCTCTACCCTCCCCTCCTG
CGGTACTTTGCCTTCGATTTTCAATGCGAGAAGAGTTCAGCACTCTCTTC
CCTCTGTGTACAGGCGAACTATGTAGCGCTATCCACTAGGCCAGGAGCGG
AAGCGAGAGGAAAACTCACTTTGTAAGAAAAGCTCGCTTACGCCGGGATT
CGAACCCCTGACCTGACCTCTACTAGTCTAGAAGGTTTCGAGGTTACCAA
TTAGACCACCGGGGCAACCGGCAATACACCTGAAACNTTCGATTTTCAAT
GCGAGAAGAGTTCAGCACTCTCTTCCCTCTGTGTACAGGCGAACTATGTA
GCGCTATCCACTAGGCCAGGAGCGGAAGCGAGAGGAAAACTCACTTTGTA
AGAAAAGCTCGCTTACGCCGGGATTCGAACCCCTGACCTGACCTCTACTA
GTCTAGAAGGTTTCGAGGTTACCAATTAGACCACCGGGGCAACCGGCAAT
ACACCTGAAACTGTTCCCAAAAAGATAGATGCGAGCAAGATGGAATTCGA
TCTTTTCTGCGGTCTTTGAGGGCAATTCGTACAAGCGAAAGATCGATTCC
TAAAGATCCAGCGGTCTTAGGCGCTCGGGTGGATAACAAAGATCGAAATC
AAATCGAATTCCGATGTTCGCAAACACCGTAAAATATTTGGGCCGTTTGC
ATCATTCCCAATTTTTGTTCCAAAGTTTCCATAGACTATGCTGCCTTTCT
TCCCCTCGCTGCCTCGGCAAGGTTTTGCGTAGGCATGACCCATAGCGATG
GGGGGGGTCTTTCTAGCGAGCAGGGCTAGACTCATCCTCAGGGGACCGAT
ACCTTCTTGCTGCAGCGCACCCGCCGCGAGGCGTGCGTCGTGGTGGAGTT
GGGTCGGCACTGGTGCGTCTAGTACAAAGGTGCAGATGCGCGGGCCTCCA
GGCCGTCGGTGTAGGCAGCAATGCCCATCTCATCTTTGTGCGCGGAGGCA
GACGTCATCAGAAAGGTGGACGGGCACTATGTACACAGCCCTAGGTTTGC
TAGAGGGAGCTGTACTGTCGCAGTAACCTGGTTTTGTTATCAAAGGAGGA
GGGGACAGGTGGTGACGAGCTGATTGGGCTGGTTGACCCTTCGGCGCGAG
AATCTTCAGACCAAGAACCCTGATTGCAACGAGGGAGAAAGCGGGGACCC
GACTGGGAAGGATAGCAACGAGACCGTGTACGAAGCGGAGCGGGTCGAGT
TTGGTCGTGCTAGGATCGACCACAGCGGCACCGGAGCAGCGGCACCGGAG
CAGCGGAACCGGACCATGCGGACGGCATCGAACCGTGGCGCACGGACAAA
CATCTCTTGTATTGTCAATTATTTTCCCGTTTTTTCTCCTGAATACAGGT
GTTGGGTGTGTGTGATGACGTCACTGGTTTTATAGAGAGACGCGGCAGAG
ATGGCGCGGATAAC
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Coding sequence (CDS) from alignment at Scaffold_345:121786..124349-

>EsuBft108_13a-0001 ID=EsuBft108_13a-0001|Name=EsuBft108_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=189bp|location=Sequence derived from alignment at Scaffold_345:121786..124349- (Ectocarpus subulatus male Bft15b)
ATGGAGAACGATGGAGGTCAACGTACTCATGATGAGAAGGCTGGCCCGGT
TCAGTTAGTTGCCGGGTGTTGTTCATGGCAACACGAGTCCTCCGGCGAGG
GCCGCTCCCCTCGCCAGAGTTCCGGTGAACACACAGCACGAAGGCCAAGG
ACCTCCTCCTCCTACTACCGCAGCCCCGCGGTTGAGTGA
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