EsuBft108_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft108_12a-0001
Unique Name	EsuBft108_12a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_345	contig	Scaffold_345:115440..116693 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft108_12
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	125
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft108_12a	EsuBft108_12a	Ectocarpus subulatus male Bft15b	gene	Scaffold_345 115440..116693 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft108_12a-0001-exon	EsuBft108_12a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_345 115440..116693 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft108_12a-0001-exon	agat-three_prime_utr-842	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_345 115440..116387 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft108_12a-0001-cds	EsuBft108_12a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_345 116388..116693 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft108_12a-0001	EsuBft108_12	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_345 116388..116693 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_345:115440..116693-
coding sequence from alignment at Scaffold_345:115440..116693-

spliced messenger RNA

>EsuBft108_12a-0001 ID=EsuBft108_12a-0001|Name=EsuBft108_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1254bp|location=Sequence derived from alignment at Scaffold_345:115440..116693- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGTTGGGCCGTCCATCCACGCGTTCTCCTGGAAGAGCACGTCCAC
GCCGGGGTCGTACGCCGCCTTCTCCACCGCCGAGACTTTGCCTTTGCCCC
GGAAAATGACCGCGGTCCGCATCAACCTGACGCCAGCTCCGATGCAACAG
TTGACGGTGCACTGTCGCTTCTCAAGAATAGGGAACGGCTGCCCAATCTG
CACTCGCAAAGCTCCCGTCTGGTCCCATGTCGAGTCGAGGCCGTTGACGA
ATGCGAGCCCAACCTGGTCGACGTTGAAACGCGTATTCAGGCTGAGGCGC
CCGTAGAGGGGCGATTCCACAGGAACGATCGGTGGCGCCGTTGTTCTCGG
TGGCGCCCTCACCAGCGGCCCGGCGAACGGGTGGTTCCTGCAGCAGCTGG
CGCAGCCTCCTGTGGAAGCTCTTCATCTGCGGAAGACGGTCCTCCACCGA
CTTTTTCGTCATGTTTGTGCGCCTTCGTTTCGAGAGATGGTGGCGTTTCG
CGAACTTCCTGCACCACCGGTCCGACGCTGAAAAGTTATTTGCACGCGGG
TCGTCCGGATACATTTCCACCACGAGCTTTCTCGCGTTGACTCGAATCCA
GGCTGTCGACACCTGAGCTTCCTCTTGCGCCGTTGCAGCAGCAGCGAGTG
CAGCTTCTTCTCTGCGTCTCCGAACCACCTCGTCTCCCTGCCAGTCTTGA
AAAGGTCTTTCTTCAAGTCATTGGCCGCGGCCTGCGATCAGCTTCTCTGC
GTCACCGTTTCACTTGCAGATGTTGGGTTGGGGAATGCCGGTCTTCCTTG
CCGGGAACTGGCACGACATTCCGTGAACATGCCAGATCTTCCCGGCGTGA
TTGGCCTCCAGCTCTCGCAGCTCCGCGACCACCGCAGCCTTCTTCCTGTT
GCTGTACTGCGCTCTCTTCTCAGCCCCTCATGTCTTCTTCCGCTTGGTGC
GTTCTTCGTCCGACAAAGGGCCGTCATCTGGCAAGTCTGATGTACCATCG
CCTTGGGTCCTTGGCTGAAGCTCAAACGAACAGCTCCCTCGCACGTGGTA
CATTTTCTGGCCCGCCGCAGTGGTGTGCCCGCCTCTCTCTGAGTGGTGAA
AGACGACATTAAAACACCTGCCCGAATACCCGTGCCAAGGTGGAGTCGTC
ATGGTCCCACCCGCCGCGAGGGCGCGCCTGAGCCCTCGTCCAAGATGCCG
AAGAGGAGCTGGGTGCACGGCACGACAGTGTAGCGATCGACCTTGTTCGG
AGGC

protein sequence of EsuBft108_12a-0001

>EsuBft108_12 ID=EsuBft108_12|Name=EsuBft108_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=101bp
MHVGPSIHAFSWKSTSTPGSYAAFSTAETLPLPRKMTAVRINLTPAPMQQ
LTVHCRFSRIGNGCPICTRKAPVWSHVESRPLTNASPTWSTLKRVFRLRR
P

mRNA from alignment at Scaffold_345:115440..116693-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft108_12a-0001 ID=EsuBft108_12a-0001|Name=EsuBft108_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1254bp|location=Sequence derived from alignment at Scaffold_345:115440..116693- (Ectocarpus subulatus male Bft15b)
ATGCACGTTGGGCCGTCCATCCACGCGTTCTCCTGGAAGAGCACGTCCAC
GCCGGGGTCGTACGCCGCCTTCTCCACCGCCGAGACTTTGCCTTTGCCCC
GGAAAATGACCGCGGTCCGCATCAACCTGACGCCAGCTCCGATGCAACAG
TTGACGGTGCACTGTCGCTTCTCAAGAATAGGGAACGGCTGCCCAATCTG
CACTCGCAAAGCTCCCGTCTGGTCCCATGTCGAGTCGAGGCCGTTGACGA
ATGCGAGCCCAACCTGGTCGACGTTGAAACGCGTATTCAGGCTGAGGCGC
CCGTAGAGGGGCGATTCCACAGGAACGATCGGTGGCGCCGTTGTTCTCGG
TGGCGCCCTCACCAGCGGCCCGGCGAACGGGTGGTTCCTGCAGCAGCTGG
CGCAGCCTCCTGTGGAAGCTCTTCATCTGCGGAAGACGGTCCTCCACCGA
CTTTTTCGTCATGTTTGTGCGCCTTCGTTTCGAGAGATGGTGGCGTTTCG
CGAACTTCCTGCACCACCGGTCCGACGCTGAAAAGTTATTTGCACGCGGG
TCGTCCGGATACATTTCCACCACGAGCTTTCTCGCGTTGACTCGAATCCA
GGCTGTCGACACCTGAGCTTCCTCTTGCGCCGTTGCAGCAGCAGCGAGTG
CAGCTTCTTCTCTGCGTCTCCGAACCACCTCGTCTCCCTGCCAGTCTTGA
AAAGGTCTTTCTTCAAGTCATTGGCCGCGGCCTGCGATCAGCTTCTCTGC
GTCACCGTTTCACTTGCAGATGTTGGGTTGGGGAATGCCGGTCTTCCTTG
CCGGGAACTGGCACGACATTCCGTGAACATGCCAGATCTTCCCGGCGTGA
TTGGCCTCCAGCTCTCGCAGCTCCGCGACCACCGCAGCCTTCTTCCTGTT
GCTGTACTGCGCTCTCTTCTCAGCCCCTCATGTCTTCTTCCGCTTGGTGC
GTTCTTCGTCCGACAAAGGGCCGTCATCTGGCAAGTCTGATGTACCATCG
CCTTGGGTCCTTGGCTGAAGCTCAAACGAACAGCTCCCTCGCACGTGGTA
CATTTTCTGGCCCGCCGCAGTGGTGTGCCCGCCTCTCTCTGAGTGGTGAA
AGACGACATTAAAACACCTGCCCGAATACCCGTGCCAAGGTGGAGTCGTC
ATGGTCCCACCCGCCGCGAGGGCGCGCCTGAGCCCTCGTCCAAGATGCCG
AAGAGGAGCTGGGTGCACGGCACGACAGTGTAGCGATCGACCTTGTTCGG
AGGC

Coding sequence (CDS) from alignment at Scaffold_345:115440..116693-

>EsuBft108_12a-0001 ID=EsuBft108_12a-0001|Name=EsuBft108_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=306bp|location=Sequence derived from alignment at Scaffold_345:115440..116693- (Ectocarpus subulatus male Bft15b)
ATGCACGTTGGGCCGTCCATCCACGCGTTCTCCTGGAAGAGCACGTCCAC
GCCGGGGTCGTACGCCGCCTTCTCCACCGCCGAGACTTTGCCTTTGCCCC
GGAAAATGACCGCGGTCCGCATCAACCTGACGCCAGCTCCGATGCAACAG
TTGACGGTGCACTGTCGCTTCTCAAGAATAGGGAACGGCTGCCCAATCTG
CACTCGCAAAGCTCCCGTCTGGTCCCATGTCGAGTCGAGGCCGTTGACGA
ATGCGAGCCCAACCTGGTCGACGTTGAAACGCGTATTCAGGCTGAGGCGC
CCGTAG