EsuBft108_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft108_11a-0001
Unique Name	EsuBft108_11a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_345	contig	Scaffold_345:109661..112225 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft108_11
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	230
Hectar predicted targeting category	mitochondrion
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft108_11a	EsuBft108_11a	Ectocarpus subulatus male Bft15b	gene	Scaffold_345 109661..112225 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft108_11a-0001-exon	agat-exon-105006	Ectocarpus subulatus male Bft15b	exon	Scaffold_345 109661..111306 -
EsuBft108_11a-0001-exon	EsuBft108_11a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_345 111571..112225 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft108_11a-0001-exon	agat-three_prime_utr-840	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_345 109661..111306 -
EsuBft108_11a-0001-exon	agat-three_prime_utr-841	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_345 111571..111952 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft108_11a-0001-cds	EsuBft108_11a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_345 111953..112225 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft108_11a-0001	EsuBft108_11	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_345 111953..112225 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_345:109661..112225-
coding sequence from alignment at Scaffold_345:109661..112225-

spliced messenger RNA

>EsuBft108_11a-0001 ID=EsuBft108_11a-0001|Name=EsuBft108_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2301bp|location=Sequence derived from alignment at Scaffold_345:109661..112225- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCTCCAAATGGAAGACCGCCTACCGAAACTTTCTCGCCGCCCTTGT
TTCGTGTAGCGGCCAGTGGTGCTTGTCGAAATGGCGCAACCCAATCCCCC
TCGTTCCGTCCACCGCCTCTCTCTCGCTGACGACTCCCTTGGTCCCCACC
AGGACGACAACACCCCACCCCCCCTCCCCCCACAGCACATACACAAGCAC
CTGTCGCCTCGTCCCAGCCCAATCTGAAGCTCCTCTCTCCCCTGCCCACG
ACTCCAATCCAACATCTCCTTGAGGCACCACGTCCACGCGAAATCCCCCG
CCCGCCCGACCAGATAATTCCCCAGCCCCCCTCTGGTTGGGACCAAATTG
TGTCTGGACGGTATCCACGCTGCTCGTCCAGCAGTATCGTCATCATCATG
CGCGTGTTGACTCCGCCGGACCCCGTTCGCTTGTCCATGCCAGTCTTCTT
GATATTTAGTCGGTAACGTATCGTTGGATGTTCGCCTCAGGCATTAGATC
ACGAAATTTGCAGGGGCAAGGTAACAGCACGGCAGTTGGGTTTCCTGTTA
GCTGACGCCATGTATCCAACTCACAACCCAGGGCCTCCCGCACGACAGGT
GCGTTGTCAACATTGGTTTCCGAGAAACTATTGTCGCACAAGGCCCCACG
GCGAGGTTTACAAGCTGGGGGAAGGGGTGCGTGAGGAGGGTTGGGGGGAT
GACGGGGTGCCTCGTTGCTACTGTTTCTCTTCCGTTAGCGTCTCCGGAAG
CACTCCTCATCCCACTTCATACCCTGTACCATACGTTATTCGGTACTGCA
CCGAATCCCGGACGGAAGCCCTGTGGTATTGTTGAAGTGTTTTTCGAAAG
GCGATTTCTGGAGGCACACGCCCGAATAGCCGATATCTGTTCAGTTTTAG
GTGGGTCTAGGGTGGTGGTGTGAGGTGTCGGAAGGGAAGGATTGAAGCCC
TTGCAGACGATACTGAATTCTCAACCTCTTTGGGTTTATGACCCAGCCCG
AAAGATAACCCAGGAGTCAAAGCAAACCGCACACACCAGTATCGGAGCAT
TGAGCACGAAAAACAAGTCCGGCTCTGCCCTGCTGTACCTCCGTCAACCT
ATTTCACTGCTGTAGAACCACTGCCAAAACGGCGTTGCTAGGGGGTAACT
ATTAACGACAAATAATTACGAAACATTTCACGGAAGCGTGTTTGCTTGAA
CAAATATGGAGGCGTTTTTCCCCGAAAACGTGAAAAGGAGGAGCCGGGAT
TTTTCGGGGCTTGCCATTANTACTGAATTCTCAACCTCTTTGGGTTTATG
ACCCAGCCCGAAAGATAACCCAGGAGTCAAAGCAAACCGCACACACCAGT
ATCGGAGCATTGAGCACGAAAAACAAGTCCGGCTCTGCCCTGCTGTACCT
CCGTCAACCTATTTCACTGCTGTAGAACCACTGCCAAAACGGCGTTGCTA
GGGGGTAACTATTAACGACAAATAATTACGAAACATTTCACGGAAGCGTG
TTTGCTTGAACAAATATGGAGGCGTTTTTCCCCGAAAACGTGAAAAGGAG
GAGCCGGGATTTTTCGGGGCTTGCCATTATCACGGATCCGTGTTTTTGAC
AGAAGCATCAGACAAGCGCACCGCGGGCGCTGTAACATGACCGAGAACGC
TAGAAAGACCTGCCAGACTCACGTCCAGGTCTGTTGTGGAGATGGACAAG
CGGCAGAAGCGGTGTTCAGTACGTTCTTGGTCCAAAACTAGACATTGCGT
TATGCTCTCGTCTTCAACTGCTGCTGTTGGTGCTGGGATTTTTTTAAAAT
CACACAAATAACAAACACGGAAACAGTAGAACGAGCACAGCAGCAGCACC
AAGACCTCCAACGCGCTGATTCCTTCGGTTCGGCTGTCCATATGATACCA
CCTTCCGGCACCGTGCTGCTTCGTGGGTATTGAGTGCTTGGATGCTGCTC
AATAAGGTGTATGAGAGATGTGTGCCACCTCACCAAAATGTCGTTGGAAA
AAATGCGGCGAGATGTCCTGTTTTTGTCGGCCACGTCAACATCAATCCAC
GGCACCACGCAGCAGAAGAGCAACAGGGCCTCTGACAACGCTAATTCTTT
CGGATTGGCCATCTATATGATGCTGGCCGTCAGCGCGGCTGCCGCCCTAT
GATTGTTGAGCTCGTCTACCTTCGGGCAGGTGGTGGTCAGAGATTGGAGT
CGCAACCGTGAAAAATGAGCTGGCAAACTGAAGAAATCGCAAGCAACACC
CAGGTTGCGACACTCTGCCCTGCGCCTTTTGTTGCTGAAAACTGAAAACA
G

protein sequence of EsuBft108_11a-0001

>EsuBft108_11 ID=EsuBft108_11|Name=EsuBft108_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=90bp
MISKWKTAYRNFLAALVSCSGQWCLSKWRNPIPLVPSTASLSLTTPLVPT
RTTTPHPPSPHSTYTSTCRLVPAQSEAPLSPAHDSNPTSP

mRNA from alignment at Scaffold_345:109661..112225-

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft108_11a-0001 ID=EsuBft108_11a-0001|Name=EsuBft108_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2565bp|location=Sequence derived from alignment at Scaffold_345:109661..112225- (Ectocarpus subulatus male Bft15b)
ATGATCTCCAAATGGAAGACCGCCTACCGAAACTTTCTCGCCGCCCTTGT
TTCGTGTAGCGGCCAGTGGTGCTTGTCGAAATGGCGCAACCCAATCCCCC
TCGTTCCGTCCACCGCCTCTCTCTCGCTGACGACTCCCTTGGTCCCCACC
AGGACGACAACACCCCACCCCCCCTCCCCCCACAGCACATACACAAGCAC
CTGTCGCCTCGTCCCAGCCCAATCTGAAGCTCCTCTCTCCCCTGCCCACG
ACTCCAATCCAACATCTCCTTGAGGCACCACGTCCACGCGAAATCCCCCG
CCCGCCCGACCAGATAATTCCCCAGCCCCCCTCTGGTTGGGACCAAATTG
TGTCTGGACGGTATCCACGCTGCTCGTCCAGCAGTATCGTCATCATCATG
CGCGTGTTGACTCCGCCGGACCCCGTTCGCTTGTCCATGCCAGTCTTCTT
GATATTTAGTCGGTAACGTATCGTTGGATGTTCGCCTCAGGCATTAGATC
ACGAAATTTGCAGGGGCAAGGTAACAGCACGGCAGTTGGGTTTCCTGTTA
GCTGACGCCATGTATCCAACTCACAACCCAGGGCCTCCCGCACGACAGGT
GCGTTGTCAACATTGGTTTCCGAGAAACTATTGTCGCACAAGGCCCCACG
GCGAGGTTTACAAGCTGGGGGAAGGGGTGCGTGAGGAGGGTTGGGGGGAT
GACGGGGTGCCTCGTTGCTACTGTTTCTCTTCCGTTAGCGTCTCCGGAAG
CACTCCTCATCCCACTTCATACCCTGTACCATACGTTATTCGGTACTGCA
CCGAATCCCGGACGGAAGCCCTGTGGTATTGTTGAAGTGTTTTTCGAAAG
GCGATTTCTGGAGGCACACGCCCGAATAGCCGATATCTGTTCAGTTTNCG
CACAAGGCCCCACGGCGAGGTTTACAAGCTGGGGGAAGGGGTGCGTGAGG
AGGGTTGGGGGGATGACGGGGTGCCTCGTTGCTACTGTTTCTCTTCCGTT
AGCGTCTCCGGAAGCACTCCTCATCCCACTTCATACCCTGTACCATACGT
TATTCGGTACTGCACCGAATCCCGGACGGAAGCCCTGTGGTATTGTTGAA
GTGTTTTTCGAAAGGCGATTTCTGGAGGCACACGCCCGAATAGCCGATAT
CTGTTCAGTTTTAGGTGGGTCTAGGGTGGTGGTGTGAGGTGTCGGAAGGG
AAGGATTGAAGCCCTTGCAGACGATACTGAATTCTCAACCTCTTTGGGTT
TATGACCCAGCCCGAAAGATAACCCAGGAGTCAAAGCAAACCGCACACAC
CAGTATCGGAGCATTGAGCACGAAAAACAAGTCCGGCTCTGCCCTGCTGT
ACCTCCGTCAACCTATTTCACTGCTGTAGAACCACTGCCAAAACGGCGTT
GCTAGGGGGTAACTATTAACGACAAATAATTACGAAACATTTCACGGAAG
CGTGTTTGCTTGAACAAATATGGAGGCGTTTTTCCCCGAAAACGTGAAAA
GGAGGAGCCGGGATTTTTCGGGGCTTGCCATTANTACTGAATTCTCAACC
TCTTTGGGTTTATGACCCAGCCCGAAAGATAACCCAGGAGTCAAAGCAAA
CCGCACACACCAGTATCGGAGCATTGAGCACGAAAAACAAGTCCGGCTCT
GCCCTGCTGTACCTCCGTCAACCTATTTCACTGCTGTAGAACCACTGCCA
AAACGGCGTTGCTAGGGGGTAACTATTAACGACAAATAATTACGAAACAT
TTCACGGAAGCGTGTTTGCTTGAACAAATATGGAGGCGTTTTTCCCCGAA
AACGTGAAAAGGAGGAGCCGGGATTTTTCGGGGCTTGCCATTATCACGGA
TCCGTGTTTTTGACAGAAGCATCAGACAAGCGCACCGCGGGCGCTGTAAC
ATGACCGAGAACGCTAGAAAGACCTGCCAGACTCACGTCCAGGTCTGTTG
TGGAGATGGACAAGCGGCAGAAGCGGTGTTCAGTACGTTCTTGGTCCAAA
ACTAGACATTGCGTTATGCTCTCGTCTTCAACTGCTGCTGTTGGTGCTGG
GATTTTTTTAAAATCACACAAATAACAAACACGGAAACAGTAGAACGAGC
ACAGCAGCAGCACCAAGACCTCCAACGCGCTGATTCCTTCGGTTCGGCTG
TCCATATGATACCACCTTCCGGCACCGTGCTGCTTCGTGGGTATTGAGTG
CTTGGATGCTGCTCAATAAGGTGTATGAGAGATGTGTGCCACCTCACCAA
AATGTCGTTGGAAAAAATGCGGCGAGATGTCCTGTTTTTGTCGGCCACGT
CAACATCAATCCACGGCACCACGCAGCAGAAGAGCAACAGGGCCTCTGAC
AACGCTAATTCTTTCGGATTGGCCATCTATATGATGCTGGCCGTCAGCGC
GGCTGCCGCCCTATGATTGTTGAGCTCGTCTACCTTCGGGCAGGTGGTGG
TCAGAGATTGGAGTCGCAACCGTGAAAAATGAGCTGGCAAACTGAAGAAA
TCGCAAGCAACACCCAGGTTGCGACACTCTGCCCTGCGCCTTTTGTTGCT
GAAAACTGAAAACAG

Coding sequence (CDS) from alignment at Scaffold_345:109661..112225-

>EsuBft108_11a-0001 ID=EsuBft108_11a-0001|Name=EsuBft108_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=273bp|location=Sequence derived from alignment at Scaffold_345:109661..112225- (Ectocarpus subulatus male Bft15b)
ATGATCTCCAAATGGAAGACCGCCTACCGAAACTTTCTCGCCGCCCTTGT
TTCGTGTAGCGGCCAGTGGTGCTTGTCGAAATGGCGCAACCCAATCCCCC
TCGTTCCGTCCACCGCCTCTCTCTCGCTGACGACTCCCTTGGTCCCCACC
AGGACGACAACACCCCACCCCCCCTCCCCCCACAGCACATACACAAGCAC
CTGTCGCCTCGTCCCAGCCCAATCTGAAGCTCCTCTCTCCCCTGCCCACG
ACTCCAATCCAACATCTCCTTGA