EsuBft108_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft108_10a-0001
Unique Name	EsuBft108_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_345	contig	Scaffold_345:93396..95465 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft108_10
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SignalP-TM
Protein domains	SignalP-noTM
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_H_REGION
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	207
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft108_10a	EsuBft108_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_345 93396..95465 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft108_10a-0001-exon	EsuBft108_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_345 93396..95465 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft108_10a-0001-exon	agat-three_prime_utr-839	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_345 93396..94431 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft108_10a-0001-cds	EsuBft108_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_345 94432..95433 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft108_10a-0001-exon	agat-five_prime_utr-527	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_345 95434..95465 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft108_10a-0001	EsuBft108_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_345 94432..95433 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_345:93396..95465-
coding sequence from alignment at Scaffold_345:93396..95465-

spliced messenger RNA

>EsuBft108_10a-0001 ID=EsuBft108_10a-0001|Name=EsuBft108_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2070bp|location=Sequence derived from alignment at Scaffold_345:93396..95465- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCCGTCCTGCTGCCCCACCTTCAACGGTTGGGATGTGTGGAACGGCATCC
GCACCGGCGGCCGCAACGGCGGCTTCGGCCAGAGCTGCGGCGGCAGGACT
AACGCCGCATGGAGCGACAACGGCAGTGGCTGCGACGGAAACGGCGGCGG
TGGGAACAGCAGCAGCAGCGGCATCCTCGGTGGCCGCGATGGTGCCCGGC
ATCGAGACGGTAGCAGCGGCGGCGATGGCAACGGCGGCGGTGGGGACAGC
AGTAGCAGCGGCGTCCCCGGTTGCCGCGTTGGCGCCGGGCAGTCAAGATA
CGTGCGCCGACAGTGGCGGCCTGACCTGCAGCAGCGGTGGAGACGACGGC
ATCTACGGTTTCAACAGGGGCGCGTCGTACCCTTTTGACCCGGGAGAATT
ATTTGCGCAGGAGGTGCGTGAGGAGGGAGATTACAACAGCGGTGGTAAGG
AGGACCGGAGCAGCGGTGCCCGCAGCAGCAGCAGCGGCGACGGCGGAGAT
GGCGCGGCCTGGCATGGAGCGTCAACGCATCCCTTTGACAGAGGGAAGCT
GTCCCGGTGGAGGAGAGCGACCAGGGGGCCCGTGCTGGGAGTGATCGAGG
TAGAGATGCATGGGCACATGCCGGGGGGTGATGCTTCGCACNTTGACAGA
GGGAAGCTGTCCCGGTGGAGGAGAGCGACCAGGGGGCCCGTGCTGGGAGT
GATCGAGGTAGAGATGCATGGGCACATGCTGGGGGGTGATGCTTCGCACC
AAGCGGCACCACCGGGAGCGGCGGCGGCGGCGGCGCGAACGGCTTCGGCC
AGAGCGCCGTCCCCGGCAGCAGCGTCATCAGGAGCGGCGACGGCAGTGGT
GGCTTCGGCCAGAGCTCCGTCGGCGGCAGCTGGAGTGGCGGCCTCTGCCA
GAGCTCCGGGGGGGGCGGCAACGGCGACAGCGGTGACGGTAGTAGCGGCC
GCAGCAGCAGCGGCGGCGGCGGCGGCGGCGGCTTCGGCAGCAGCGACGGC
GGGAGCGGCGCCACCGGCAACGGCAGCAGTTTGAGCGGGGATGAGAGGGC
GCGCGAGCGGCGGAAGAGTTTACCCTTGTCTGTTTCCCCCCCGCCCACCC
CTCCCGTGCCCCCCACAGCGCCACACCTGCAGCGAGCCCCGGCGACGTAC
GCGCAAGCTAACGCGGGGCGGGCGCAGCGTAATTTGGGGAGTAAAGGCGA
AGCGGAAGACGGATATTTGGCTCCGGTGGACACCCTCGAGTCGACCGAGC
AGGGCGAGGATATGGTGGCACCGACGACCTCACCATATTTGCGCCAAATT
GGAGACCATGTAAAATATCAACGAGTTTGTCTGGGTTTTGTGTGCAGGCA
TTGGCATGTTGACTTCACGTTGTTTTGTTCTTTGTGGTTTTTATTTTTGT
TGTTCCATGTCGGGTTTCTCCCCGTGGCGCCGAAGACGAGAAATTCATCC
AGGAATCGCCTCCGAGAGACAACGCGTTACTGTGTACGGCATCCCTGTTT
GTGGTTGAGTATTTATTTGATTTTTTCTGTGTTTTGACTTGTTGTGTTTT
GGACCCGAATTTGTGTAATATGCGAAATTCAATGATCACTGTCGAACTGC
TGTTTGTACTGCTGTCTAAGAACCATGCGGGGGGGATTTGTGTACGATGT
TTCTTGCCGCAGTACCAGCAGAGCAGAGTGCTTTCGTCGAGTTCTGTTCA
AGTTGGATTTGTTTCCTTATGATTTTCTGGGCGTTTTCTTCGTTCTGCTG
TGTTTTGCGTCAAGAATCAGGGGGATAGGAAATATGTTGTCATGATTCCA
GACGCAACACCAGCGAATGCTATGTGTTTTTGATATGTATGCAGGGCATT
TTTCAGCTGGGGGGCTGTTTCGTACACTTTGATGTGTTGAGATCCTCTGT
TGGTTGGAAAGGGAGGGAAGGAAGCGCAGGCAGAGATATCTGTATGTTTC
GGGGAAATATTCCAGCTGGGGGGCTGTCACGTATTGATGTTGGTATTGAT
AATGCTGTCTTGCGCCAAAACCAGTGAGATACGGGTGTCGCAGAATTTGC
ATCTTTCGGGAGATGTTGCA

protein sequence of EsuBft108_10a-0001

>EsuBft108_10 ID=EsuBft108_10|Name=EsuBft108_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=333bp
MCGTASAPAAATAASARAAAAGLTPHGATTAVAATETAAVGTAAAAASSV
AAMVPGIETVAAAAMATAAVGTAVAAASPVAALAPGSQDTCADSGGLTCS
SGGDDGIYGFNRGASYPFDPGELFAQEVREEGDYNSGGKEDRSSGARSSS
SGDGGDGAAWHGASTHPFDRGKLSRWRRATRGPVLGVIEVEMHGHMPGGD
ASHXDRGKLSRWRRATRGPVLGVIEVEMHGHMLGGDASHQAAPPGAAAAA
ARTASARAPSPAAASSGAATAVVASARAPSAAAGVAASARAPGGAATATA
VTVVAAAAAAAAAAAAASAAATAGAAPPATAAV

mRNA from alignment at Scaffold_345:93396..95465-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft108_10a-0001 ID=EsuBft108_10a-0001|Name=EsuBft108_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2070bp|location=Sequence derived from alignment at Scaffold_345:93396..95465- (Ectocarpus subulatus male Bft15b)
TCCGTCCTGCTGCCCCACCTTCAACGGTTGGGATGTGTGGAACGGCATCC
GCACCGGCGGCCGCAACGGCGGCTTCGGCCAGAGCTGCGGCGGCAGGACT
AACGCCGCATGGAGCGACAACGGCAGTGGCTGCGACGGAAACGGCGGCGG
TGGGAACAGCAGCAGCAGCGGCATCCTCGGTGGCCGCGATGGTGCCCGGC
ATCGAGACGGTAGCAGCGGCGGCGATGGCAACGGCGGCGGTGGGGACAGC
AGTAGCAGCGGCGTCCCCGGTTGCCGCGTTGGCGCCGGGCAGTCAAGATA
CGTGCGCCGACAGTGGCGGCCTGACCTGCAGCAGCGGTGGAGACGACGGC
ATCTACGGTTTCAACAGGGGCGCGTCGTACCCTTTTGACCCGGGAGAATT
ATTTGCGCAGGAGGTGCGTGAGGAGGGAGATTACAACAGCGGTGGTAAGG
AGGACCGGAGCAGCGGTGCCCGCAGCAGCAGCAGCGGCGACGGCGGAGAT
GGCGCGGCCTGGCATGGAGCGTCAACGCATCCCTTTGACAGAGGGAAGCT
GTCCCGGTGGAGGAGAGCGACCAGGGGGCCCGTGCTGGGAGTGATCGAGG
TAGAGATGCATGGGCACATGCCGGGGGGTGATGCTTCGCACNTTGACAGA
GGGAAGCTGTCCCGGTGGAGGAGAGCGACCAGGGGGCCCGTGCTGGGAGT
GATCGAGGTAGAGATGCATGGGCACATGCTGGGGGGTGATGCTTCGCACC
AAGCGGCACCACCGGGAGCGGCGGCGGCGGCGGCGCGAACGGCTTCGGCC
AGAGCGCCGTCCCCGGCAGCAGCGTCATCAGGAGCGGCGACGGCAGTGGT
GGCTTCGGCCAGAGCTCCGTCGGCGGCAGCTGGAGTGGCGGCCTCTGCCA
GAGCTCCGGGGGGGGCGGCAACGGCGACAGCGGTGACGGTAGTAGCGGCC
GCAGCAGCAGCGGCGGCGGCGGCGGCGGCGGCTTCGGCAGCAGCGACGGC
GGGAGCGGCGCCACCGGCAACGGCAGCAGTTTGAGCGGGGATGAGAGGGC
GCGCGAGCGGCGGAAGAGTTTACCCTTGTCTGTTTCCCCCCCGCCCACCC
CTCCCGTGCCCCCCACAGCGCCACACCTGCAGCGAGCCCCGGCGACGTAC
GCGCAAGCTAACGCGGGGCGGGCGCAGCGTAATTTGGGGAGTAAAGGCGA
AGCGGAAGACGGATATTTGGCTCCGGTGGACACCCTCGAGTCGACCGAGC
AGGGCGAGGATATGGTGGCACCGACGACCTCACCATATTTGCGCCAAATT
GGAGACCATGTAAAATATCAACGAGTTTGTCTGGGTTTTGTGTGCAGGCA
TTGGCATGTTGACTTCACGTTGTTTTGTTCTTTGTGGTTTTTATTTTTGT
TGTTCCATGTCGGGTTTCTCCCCGTGGCGCCGAAGACGAGAAATTCATCC
AGGAATCGCCTCCGAGAGACAACGCGTTACTGTGTACGGCATCCCTGTTT
GTGGTTGAGTATTTATTTGATTTTTTCTGTGTTTTGACTTGTTGTGTTTT
GGACCCGAATTTGTGTAATATGCGAAATTCAATGATCACTGTCGAACTGC
TGTTTGTACTGCTGTCTAAGAACCATGCGGGGGGGATTTGTGTACGATGT
TTCTTGCCGCAGTACCAGCAGAGCAGAGTGCTTTCGTCGAGTTCTGTTCA
AGTTGGATTTGTTTCCTTATGATTTTCTGGGCGTTTTCTTCGTTCTGCTG
TGTTTTGCGTCAAGAATCAGGGGGATAGGAAATATGTTGTCATGATTCCA
GACGCAACACCAGCGAATGCTATGTGTTTTTGATATGTATGCAGGGCATT
TTTCAGCTGGGGGGCTGTTTCGTACACTTTGATGTGTTGAGATCCTCTGT
TGGTTGGAAAGGGAGGGAAGGAAGCGCAGGCAGAGATATCTGTATGTTTC
GGGGAAATATTCCAGCTGGGGGGCTGTCACGTATTGATGTTGGTATTGAT
AATGCTGTCTTGCGCCAAAACCAGTGAGATACGGGTGTCGCAGAATTTGC
ATCTTTCGGGAGATGTTGCA

Coding sequence (CDS) from alignment at Scaffold_345:93396..95465-

>EsuBft108_10a-0001 ID=EsuBft108_10a-0001|Name=EsuBft108_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1002bp|location=Sequence derived from alignment at Scaffold_345:93396..95465- (Ectocarpus subulatus male Bft15b)
ATGTGTGGAACGGCATCCGCACCGGCGGCCGCAACGGCGGCTTCGGCCAG
AGCTGCGGCGGCAGGACTAACGCCGCATGGAGCGACAACGGCAGTGGCTG
CGACGGAAACGGCGGCGGTGGGAACAGCAGCAGCAGCGGCATCCTCGGTG
GCCGCGATGGTGCCCGGCATCGAGACGGTAGCAGCGGCGGCGATGGCAAC
GGCGGCGGTGGGGACAGCAGTAGCAGCGGCGTCCCCGGTTGCCGCGTTGG
CGCCGGGCAGTCAAGATACGTGCGCCGACAGTGGCGGCCTGACCTGCAGC
AGCGGTGGAGACGACGGCATCTACGGTTTCAACAGGGGCGCGTCGTACCC
TTTTGACCCGGGAGAATTATTTGCGCAGGAGGTGCGTGAGGAGGGAGATT
ACAACAGCGGTGGTAAGGAGGACCGGAGCAGCGGTGCCCGCAGCAGCAGC
AGCGGCGACGGCGGAGATGGCGCGGCCTGGCATGGAGCGTCAACGCATCC
CTTTGACAGAGGGAAGCTGTCCCGGTGGAGGAGAGCGACCAGGGGGCCCG
TGCTGGGAGTGATCGAGGTAGAGATGCATGGGCACATGCCGGGGGGTGAT
GCTTCGCACNTTGACAGAGGGAAGCTGTCCCGGTGGAGGAGAGCGACCAG
GGGGCCCGTGCTGGGAGTGATCGAGGTAGAGATGCATGGGCACATGCTGG
GGGGTGATGCTTCGCACCAAGCGGCACCACCGGGAGCGGCGGCGGCGGCG
GCGCGAACGGCTTCGGCCAGAGCGCCGTCCCCGGCAGCAGCGTCATCAGG
AGCGGCGACGGCAGTGGTGGCTTCGGCCAGAGCTCCGTCGGCGGCAGCTG
GAGTGGCGGCCTCTGCCAGAGCTCCGGGGGGGGCGGCAACGGCGACAGCG
GTGACGGTAGTAGCGGCCGCAGCAGCAGCGGCGGCGGCGGCGGCGGCGGC
TTCGGCAGCAGCGACGGCGGGAGCGGCGCCACCGGCAACGGCAGCAGTTT
GA