EsuBft1089_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1089_4a-0001
Unique NameEsuBft1089_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_598contigScaffold_598:377228..380550 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FVT2
ProteomeIdEsuBft1089_4
Protein domainsIPR027408
Protein domainsPTHR11953
Protein domainsIPR020568
Protein domainsIPR015847
Protein domainsIPR001247
Ownerapollo_admin@sb-roscoff.fr
Noteexosome complex exonuclease rrp46 homolog os:oryza sativa japonica gn:rrp46 pe:1 sv:2 [Automatic annotation]
Nb exon2
Max annot lvl2759|Eukaryota
Length2097
Hectar predicted targeting categoryother localisation
Evalue2.81e-140
EggNOG OGsCOG0689@1|root,KOG1069@2759|Eukaryota
Ec32 ortholog descriptionRrp46 is a component of the exosome 3'->5' exoribonuclease complex, a complex that degrades mRNAs.
Ec32 orthologEc-01_002040.1
Date last modified2016-06-13
Date creation2016-06-13
Preferred nameEXOSC5
KEGG koko:K12590,ko:K12812
KEGG Pathwayko03013,ko03015,ko03018,ko03040,ko05164,map03013,map03015,map03018,map03040,map05164
KEGG ModuleM00391,M00406,M00430
GOsGO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000184,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000737,GO:0000785,GO:0000956,GO:0002252,GO:0002376,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003727,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004536,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006304,GO:0006308,GO:0006309,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006915,GO:0006921,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0008219,GO:0008408,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0012501,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016078,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019219,GO:0019222,GO:0019439,GO:0019899,GO:0022411,GO:0022613,GO:0030262,GO:0031123,GO:0031125,GO:0031126,GO:0031323,GO:0031325,GO:0031329,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032075,GO:0032077,GO:0032991,GO:0034427,GO:0034470,GO:0034472,GO:0034475,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0035327,GO:0042254,GO:0042802,GO:0043085,GO:0043144,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043487,GO:0043488,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045006,GO:0045935,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051252,GO:0051336,GO:0051345,GO:0051607,GO:0051704,GO:0051707,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070478,GO:0070481,GO:0070651,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071035,GO:0071038,GO:0071042,GO:0071046,GO:0071047,GO:0071051,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0097194,GO:0098542,GO:0140097,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1903311,GO:1905354
EC3.6.4.13
Descriptionpolyadenylation-dependent snoRNA 3'-end processing
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03041
Cross References
External references for this mRNA
DatabaseAccession
GO0010467
GO0035327
GO0051607
GO0003690
GO0006308
GO0004532
GO0000178
GO0004536
GO0042802
GO0045006
GO0005737
GO0003727
GO0043928
GO0090501
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1089_4aEsuBft1089_4aEctocarpus subulatus male Bft15bgeneScaffold_598 377228..380550 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1089_4a-0001-exonagat-exon-94750Ectocarpus subulatus male Bft15bexonScaffold_598 377228..378884 -
EsuBft1089_4a-0001-exonEsuBft1089_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_598 380111..380550 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1089_4a-0001-exonagat-three_prime_utr-835Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_598 377228..378515 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1089_4a-0001-cdsEsuBft1089_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_598 378516..378884 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1089_4a-0001-exonagat-five_prime_utr-523Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_598 380435..380550 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1089_4a-0001EsuBft1089_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_598 378516..380434 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1089_4a-0001 ID=EsuBft1089_4a-0001|Name=EsuBft1089_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2097bp|location=Sequence derived from alignment at Scaffold_598:377228..380550- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCGCGCCACGCGGGCTGCCGCAGAATACGATTAGCACCGAATAACAGCA
CACGTGAGCCAAGGCGGTAGTCCGTTATTCGATCTCGGCGTTATTCCCCT
GCCTTCCCTGTAAAGCATGGAGGAAACTCGGAGAGACGGGAGGCGGGCCA
ACCAGATCCGCCCTCTCGCGGCAGAGCAGGGCATCCTCAACAGAGCGGAC
GGCTCCGCTCGCTTCGTGCAGGGCAACACCTCCGTCCTCGCCGCCGTCTA
CGGGCCGGCCCCGGCTAAGGCGTTGAGGATGGAGAGGCCAGAGGGTGCAA
CGTTAGATGTGAGCTTCAAGCCGGAGAGCGGGATAACGTTACCCGCCGAT
GCGGAATCGGCAGCGCTGCTGCGGAGGTCGCTGGAGGAGGTGGTGCTGAG
GTCGAGATATCCTAGGACCGTGGTGTCAGTTATCATTCAGGTGATCGTTG
ACGACGGGGCTGTTCTGAGCGCTGCTCTGAACGCTGCTACGATGGCCCTC
CTCAACGCCGGGGTAGAGATGACGGGCATGGCCCTCTCGGTCACCTGCTG
CATCACCGCGGCGGTCTCTGGCCGGTCCGTGCTCTTGGACCCATGCAAGG
CTGAGGAGATTGATGCAGCCGCCACCGCCGTCGTCGCCACTCTCTCCGCC
GGTGGTGGAGTCCTGTCATGCCGCGCCGTCGGTTCGATGAGCCAGGAGGA
GTATTTCGCGTGCTGCGAGGCGGCGTCGCTGGGCACGACGGCCGTGCGAT
CGTTCGTGAGGCTATCCGCAGAGCAGAAGGTCAACCGCGAAGCAGAAACT
CTGAGATGACGATGGGAGCCTGAGCGTGAATGGAGCCTTTTGCAGCGTAC
TGTGGAATCGAGGGCGCCTTCCTGCATGTTGACTATCGTCGACGAATCCA
CCTGGCCGCTGCTGTCGCACGCGCGAAGATGAACTTGCCGGGTATGTGCG
TGGACCAGCGTAACAGGCATTCGCTCTACCATTGTGACAGCTGTGCAGCG
CGTGTCACCCGGCGCTGGAAAGGTGTGGCGTGGCGTTGAAGTCGAGCATG
ACTGCTGCAAGTGTTCGTTTGGGCTTACGATGAAAATTGACGCGAAGAAC
CGAGTCTCATGATTCAAAATCGGCGGTCGTCATTCGTGAGCGAATCTTTA
GGCTGTTGCACAAAAGTTTTCAGGTTCACCCATATGATTAGTAGTTCAAG
CAAGGAGTGCAGCTGAATAATGTTGTCTTGGTTAGTTCTGGCTTGATCTT
GAACTGCAACAGACGACGACCAGTTTCTTTCCAGCCCAGCTAGCAACCAT
ATTGGGCTTGCGCGTGTGAAAATTCTGCTGTGCGAGGAGTGGGCACGCCG
CCACTTCGTTGCCCGATTGCTGGACCAATCCGCAACCGGCGAAGAAGGCC
ATGATGCAAATGGTGGCGTAGCGTTGGTAAAGACAGTGGTTTCCTCATCC
AGCTGTACGACTCAGTAGTGAAGCCTGCTGCATTCGGTTTTGGCAGGCCA
GTTGTCCACGAGATAAGACTTTTGGAAGATTTTGCGGTTTGACAACCTCC
AGCCTAGTCGGTAGAGTGCCGGATATGGTGCCCTGAGAAGCTTTGATCAG
CGCCTGTGGAGTCGGCTTGTCTCAGGGTACAGTAACGAACGTGTCTTTCC
CCCCACTTGTTGTCTCGAGAAACGCTTTCATGTCGATGGCGCAACTTCAC
GGACGTAAATCCTTGTGCCCGTCGGTGGTTTCGTGGATGCCGTTTGGGCC
CGTGTATTGGAATGAGCGGAAAGCGATCTCGAGGAGCAGCCTTGATGGAC
CTCTGTTCCTGCACTGTTGCGAAGCCATTTCACTCAACGTTGAGCGAGTT
CTATTAGGCTGCTGCTCCATATGGTCACTGCCAACTCGCGTGCGTGCGCT
CGCTGTACAACATTTTGGAGACTTGTATGCACAGGAGCCAAAAGGTACAG
ATTTGAAATCGAAGGATATGGGCGCAAGCGTTGCCTCAGGAGCATGCCTT
CGAGTGGACTGGAAATTTGCCTTCTTTGGGGATGCTAATATATACCTTGA
CGCGTAATAGCTACTAACTGCAACGAATGACCTGGTGGGTTACGAGC
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protein sequence of EsuBft1089_4a-0001

>EsuBft1089_4 ID=EsuBft1089_4|Name=EsuBft1089_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=230bp
MEETRRDGRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPA
KALRMERPEGATLDVSFKPESGITLPADAESAALLRRSLEEVVLRSRYPR
TVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITAAV
SGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCRAVGSMSQEEYFACC
EAASLGTTAVRSFVRLSAEQKVNREAETLR
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mRNA from alignment at Scaffold_598:377228..380550-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1089_4a-0001 ID=EsuBft1089_4a-0001|Name=EsuBft1089_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3323bp|location=Sequence derived from alignment at Scaffold_598:377228..380550- (Ectocarpus subulatus male Bft15b)
CCCGCGCCACGCGGGCTGCCGCAGAATACGATTAGCACCGAATAACAGCA
CACGTGAGCCAAGGCGGTAGTCCGTTATTCGATCTCGGCGTTATTCCCCT
GCCTTCCCTGTAAAGCATGGAGGAAACTCGGAGAGACGGGAGGCGGGCCA
ACCAGATCCGCCCTCTCGCGGCAGAGCAGGGCATCCTCAACAGAGCGGAC
GGCTCCGCTCGCTTCGTGCAGGGCAACACCTCCGTCCTCGCCGCCGTCTA
CGGGCCGGCCCCGGCTAAGGCGTTGAGGATGGAGAGGCCAGAGGGTGCAA
CGTTAGATGTGAGCTTCAAGCCGGAGAGCGGGATAACGTTACCCGCCGAT
GCGGAATCGGCAGCGCTGCTGCGGAGGTCGCTGGAGGAGGTGGTGCTGAG
GTCGAGATATCCTAGGACCGTGGTGTCAGTTATCATTCAGGTGTGCATCC
ATAGTTATGTCAAAGTTAAAGGAAGGAGTCAGGGTGGGTGTAAAGATGTC
GTATCCGAACTTCTATAGCAGAGAAACAACAGCAGTATACTCTTATAGCT
TTGGTGCTGGAACGCGGCTGGTGAAGCATGGTGATCATTATCGGTTTCTA
GATATCCAACGATAGACAGAGAAGGGGTAGGGACCGGAGCTGAACAACCA
CACAATCTTCGCGCCTGATTCCCCCTCAATAACTGTCTCTATCTCTTTCT
CTCTCTCCGCATGCAAGTCAACTATATCCAGCCGGGGGGGAACCGGCTGC
AGCTACTTGCACGCAGTATAATTGGGAGCCAATCAGATGTATGTATCTGC
ACCAAACATTTGGAGAGCAATACATATACGTAAGGGACAGCAAGAGTGTG
TATTGGGTGATCTTGCCTCACACGCATACCGACTACCAATGCCGCCTACT
AGCTGCTTCGGTCCGTACTCCATCGTATCTGAGTCTCTGTGAGAGTTCAT
ACCATTGGCGGCTTTTCTGCGTCGGAGTCGAACTGCCTATGCAGCAGTGC
TGGATCTGAAGCGCAAGGCACACCGCCACATTCTAAATCGATTCAGGTTT
ATGTGCTTTCTTTGAAACATATCCCCGGCTGGAATATACCGGCGAAGGGA
TTTCCGGGATCCGCAGCGAGCAGTTACGCATGCTGCCGGCAGTGATATTC
CGCTTGCGAAGCGTTGATAGCACCTGGTACAGTACTTGGAAGCATGTTGC
AGCTCAAATTCCGCAATGCTTCACTTGTGGGGAAGAGGTACTGCCCCTAT
GTGGCAGCGGCATTTGGACTGTGGTTGATGGCTTTCGCGTCGTTCGGCAA
GGACCGGGAAAGAGATAGCGTCATGTTTTGCACGATTTTTCACATGTCGT
ACATCCATAGTCTAAATCCATGAACAGCGAGCCTATTGACGCGCGCCCGT
GTCTACCTCTATGCAGGTAGCCATCCACCTTGATGTTACCCGTGCCTGGT
ACAACATGCACAGTCACAAGCACGGCTTACGTTTGGTCATGGATTTATCG
ACGAAGTGACGCCACGCCAAACATATTGTACGCTTTCTCGTTCACGGAAA
ACGCGATAACACATTCATTTTTTGGAGCACCTGCCCAAAATGTCGTATGT
GCGCAGTGCCCGCTTGATATTTCCGTTCTCCTGACATGCTTCAACAACCC
CCAAACAATAAAACAGGTGATCGTTGACGACGGGGCTGTTCTGAGCGCTG
CTCTGAACGCTGCTACGATGGCCCTCCTCAACGCCGGGGTAGAGATGACG
GGCATGGCCCTCTCGGTCACCTGCTGCATCACCGCGGCGGTCTCTGGCCG
GTCCGTGCTCTTGGACCCATGCAAGGCTGAGGAGATTGATGCAGCCGCCA
CCGCCGTCGTCGCCACTCTCTCCGCCGGTGGTGGAGTCCTGTCATGCCGC
GCCGTCGGTTCGATGAGCCAGGAGGAGTATTTCGCGTGCTGCGAGGCGGC
GTCGCTGGGCACGACGGCCGTGCGATCGTTCGTGAGGCTATCCGCAGAGC
AGAAGGTCAACCGCGAAGCAGAAACTCTGAGATGACGATGGGAGCCTGAG
CGTGAATGGAGCCTTTTGCAGCGTACTGTGGAATCGAGGGCGCCTTCCTG
CATGTTGACTATCGTCGACGAATCCACCTGGCCGCTGCTGTCGCACGCGC
GAAGATGAACTTGCCGGGTATGTGCGTGGACCAGCGTAACAGGCATTCGC
TCTACCATTGTGACAGCTGTGCAGCGCGTGTCACCCGGCGCTGGAAAGGT
GTGGCGTGGCGTTGAAGTCGAGCATGACTGCTGCAAGTGTTCGTTTGGGC
TTACGATGAAAATTGACGCGAAGAACCGAGTCTCATGATTCAAAATCGGC
GGTCGTCATTCGTGAGCGAATCTTTAGGCTGTTGCACAAAAGTTTTCAGG
TTCACCCATATGATTAGTAGTTCAAGCAAGGAGTGCAGCTGAATAATGTT
GTCTTGGTTAGTTCTGGCTTGATCTTGAACTGCAACAGACGACGACCAGT
TTCTTTCCAGCCCAGCTAGCAACCATATTGGGCTTGCGCGTGTGAAAATT
CTGCTGTGCGAGGAGTGGGCACGCCGCCACTTCGTTGCCCGATTGCTGGA
CCAATCCGCAACCGGCGAAGAAGGCCATGATGCAAATGGTGGCGTAGCGT
TGGTAAAGACAGTGGTTTCCTCATCCAGCTGTACGACTCAGTAGTGAAGC
CTGCTGCATTCGGTTTTGGCAGGCCAGTTGTCCACGAGATAAGACTTTTG
GAAGATTTTGCGGTTTGACAACCTCCAGCCTAGTCGGTAGAGTGCCGGAT
ATGGTGCCCTGAGAAGCTTTGATCAGCGCCTGTGGAGTCGGCTTGTCTCA
GGGTACAGTAACGAACGTGTCTTTCCCCCCACTTGTTGTCTCGAGAAACG
CTTTCATGTCGATGGCGCAACTTCACGGACGTAAATCCTTGTGCCCGTCG
GTGGTTTCGTGGATGCCGTTTGGGCCCGTGTATTGGAATGAGCGGAAAGC
GATCTCGAGGAGCAGCCTTGATGGACCTCTGTTCCTGCACTGTTGCGAAG
CCATTTCACTCAACGTTGAGCGAGTTCTATTAGGCTGCTGCTCCATATGG
TCACTGCCAACTCGCGTGCGTGCGCTCGCTGTACAACATTTTGGAGACTT
GTATGCACAGGAGCCAAAAGGTACAGATTTGAAATCGAAGGATATGGGCG
CAAGCGTTGCCTCAGGAGCATGCCTTCGAGTGGACTGGAAATTTGCCTTC
TTTGGGGATGCTAATATATACCTTGACGCGTAATAGCTACTAACTGCAAC
GAATGACCTGGTGGGTTACGAGC
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Coding sequence (CDS) from alignment at Scaffold_598:377228..380550-

>EsuBft1089_4a-0001 ID=EsuBft1089_4a-0001|Name=EsuBft1089_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=693bp|location=Sequence derived from alignment at Scaffold_598:377228..380550- (Ectocarpus subulatus male Bft15b)
ATGGAGGAAACTCGGAGAGACGGGAGGCGGGCCAACCAGATCCGCCCTCT
CGCGGCAGAGCAGGGCATCCTCAACAGAGCGGACGGCTCCGCTCGCTTCG
TGCAGGGCAACACCTCCGTCCTCGCCGCCGTCTACGGGCCGGCCCCGGCT
AAGGCGTTGAGGATGGAGAGGCCAGAGGGTGCAACGTTAGATGTGAGCTT
CAAGCCGGAGAGCGGGATAACGTTACCCGCCGATGCGGAATCGGCAGCGC
TGCTGCGGAGGTCGCTGGAGGAGGTGGTGCTGAGGTCGAGATATCCTAGG
ACCGTGGTGTCAGTTATCATTCAGGTGATCGTTGACGACGGGGCTGTTCT
GAGCGCTGCTCTGAACGCTGCTACGATGGCCCTCCTCAACGCCGGGGTAG
AGATGACGGGCATGGCCCTCTCGGTCACCTGCTGCATCACCGCGGCGGTC
TCTGGCCGGTCCGTGCTCTTGGACCCATGCAAGGCTGAGGAGATTGATGC
AGCCGCCACCGCCGTCGTCGCCACTCTCTCCGCCGGTGGTGGAGTCCTGT
CATGCCGCGCCGTCGGTTCGATGAGCCAGGAGGAGTATTTCGCGTGCTGC
GAGGCGGCGTCGCTGGGCACGACGGCCGTGCGATCGTTCGTGAGGCTATC
CGCAGAGCAGAAGGTCAACCGCGAAGCAGAAACTCTGAGATGA
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