EsuBft1089_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1089_2a-0001
Unique Name	EsuBft1089_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_598	contig	Scaffold_598:398103..400528 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1089_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	242
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1089_2a	EsuBft1089_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_598 398103..400528 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1089_2a-0001-exon	EsuBft1089_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_598 398103..400528 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1089_2a-0001-exon	agat-three_prime_utr-833	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_598 398103..400378 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1089_2a-0001-cds	EsuBft1089_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_598 400379..400528 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1089_2a-0001	EsuBft1089_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_598 400379..400528 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_598:398103..400528-
coding sequence from alignment at Scaffold_598:398103..400528-

spliced messenger RNA

>EsuBft1089_2a-0001 ID=EsuBft1089_2a-0001|Name=EsuBft1089_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2426bp|location=Sequence derived from alignment at Scaffold_598:398103..400528- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACAAAGGAAGAAGAACTCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCATGCTTGTGAGACACCTTCCATACCGAGAAAAGGTTGAAAC
CACACCCGGGTACAAACAAAACTTCTGGCACAGTGACGTCCAAATCCTCC
TGTTCCCCGTCGGCTCCGATTTGGTGGAACCTAAGGTCCAAACTCCCTAC
AGCGGCAACCTTGATGAGAGCCGAGTCTCCAATCTGAATAAATCGGGCAT
CCGGGCCCAAGTGGCGTACATTGTACATTGCATCCACTTTGTTAGTAATC
ATCGGCCTGCCATTGTTCGCTCCCGATGGGATTCGGCATGGAGGGTTGGC
ACAAGAAAGCTTTCTCAACCGTGGGACGGCGGGTGAGACGGGCTACGACG
ACCTTTCCAGGCACACTTGGTGGAGCAGAGACAGATGTGTCACACGCCTG
AACGCCGACCACTTCATCAGGACTCTCAAGTGCAGCGGGCATGCGGGGTA
CATCATGAGTAGACACACCAAACTTCAAGACACCGAACTCATCATCAGAA
CGTTCATGCACAGCAGGCACGCGGGGAACACCAGGCATTGACACATGAAA
CTCCGCACTCGTGAACACGTCAGACTTCGAAAAAACAACATCCTTCTCAA
AATCAATCTTAGACTTGCCTCGAGGGCACACGCCACGTGCCACGAAGAGA
TGCAGGGGGGAATCGCCGGCTGGAGGTAGAGCGTCGCCTGGAGCTGGAGA
GAGGAAGGAGGAGGAAGAGGTCGCCTGGGGTGCTCTGTAGTGCTGCTGCT
GCTCATGCTGCTGCGAGGTGTCGAAGGCCTCGTAGGCTCGCGGTTGTTGT
GCGTCCGGTCCAGCAGCAGAAGGAAAGTGTGGTACATTGCTCACTTCTTG
CTGCTGGTAGAGCCCTCCGCCGTCGGGAAATTGGTGGAAACCGTATCCCC
CGCCGGCGGCGCTGCCGTAGGGACCTCCGCCATGATCCACTCCGTGAGCC
GCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNAATCTGCGCGGGAGGAACGTTAGGCGGCGGATAATTACCAC
CACGGCCGCCCACCTGACGACCTCGGCTCTCCGGGGGGGAAGGACCGTAG
CCACCATACCCACGCCCCCCAGAGTTGCACCCCTGCAGCTGTCCTCCAGT
TCCGGATCCTTGCCCACGCGGCGGTCCCGGCAGCGCTGGAGAGTGGCCCC
GACTCCAGCCCGCACCTTGCTCGTTTTGGTACGGCTGCTGTCGACATGGG
CCACCAACCATCCGCCCCGAGTCTTGGGCTCCGCCTCGAGCAAAGACCGA
TGCCTGGGCCTCCCGCCTCCCGCTCATGTACGCGCAGAACTCGTTGTAGT
GGGCGAGGAATTTGTTGCGTAATTTGTGACATTCGGAGGTCTCGTGGGTG
CTGTTGGGGCCGTGGAGCTGGCAGAAGTGCGATGGTTGCTGCTGATGTGG
CTGCACCGACCTTTGTGGTTGCTGGAGTCGATGTCCGCCTTGCTCCGATC
CTGCAGCGGCTGGTTTCCCCTCCTCGCCACTCCCGCCCACGCCGGCAGCG
ACGAGGGCGTTCCTCATCTCTTCCTTCCCCTCTCCAGCTCTCCGCTTGTA
CCTCAGCTCGTGCTCTTCCAACCTCAGCATCTCCTGCATTGTAGCCCTCG
ACAACATCGAATCAAACAGAAGACGGTCTTAAGTTTTCTCATACCTTGGG
AGAAATCCCCGGACTATGTGTCTGCACATCGACTTTTCATCCCTGTTATC
ACCATACGATCCAAGTCTCATCCACAGCGCAACTGCCCTACCGCAATAGT
CCATAAGACTCTCTCCTTGCCTCTGGCCTATTACGTTCCATGCGTCGTCA
AGAGTTTGTCGCTCCTGACTCTTGTCCTGGCTGTATTGTTCGAGAAACAC
GCGGTACCCTGCTTGAGGTGATTCTGATGCCAAGATTTGGGCTTGTACGG
GTTGTGCTGTGATCTTAGCTAGCATAAACGTCCAAATCTTCCTGGATTGC
TTCACTCTTTCCTCTCCGAACGTGCTGCTCAACCAATTCAAATCCACACC
AGCTGCACCAATAGGGACCTCTGAACTCCCCATCACACCAGCAAGTCCCT
CACTCTCCAGCCACGCTTCAAAAGCACTCGTGAACACTCGCAATGCAACT
TCGATCGATCTGTTCTTCAGATAATCATCACTCCATACTGGTACATCTAT
CTTTTCTCTCTGCCTCAGTTCTAAGATCTGGTTGTTAGACGTGCCTGAGT
GGGCACGGCGCCCCTGGTCATGAGTT

protein sequence of EsuBft1089_2a-0001

>EsuBft1089_2 ID=EsuBft1089_2|Name=EsuBft1089_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MPQRKKNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

mRNA from alignment at Scaffold_598:398103..400528-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1089_2a-0001 ID=EsuBft1089_2a-0001|Name=EsuBft1089_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2426bp|location=Sequence derived from alignment at Scaffold_598:398103..400528- (Ectocarpus subulatus male Bft15b)
ATGCCACAAAGGAAGAAGAACTCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCATGCTTGTGAGACACCTTCCATACCGAGAAAAGGTTGAAAC
CACACCCGGGTACAAACAAAACTTCTGGCACAGTGACGTCCAAATCCTCC
TGTTCCCCGTCGGCTCCGATTTGGTGGAACCTAAGGTCCAAACTCCCTAC
AGCGGCAACCTTGATGAGAGCCGAGTCTCCAATCTGAATAAATCGGGCAT
CCGGGCCCAAGTGGCGTACATTGTACATTGCATCCACTTTGTTAGTAATC
ATCGGCCTGCCATTGTTCGCTCCCGATGGGATTCGGCATGGAGGGTTGGC
ACAAGAAAGCTTTCTCAACCGTGGGACGGCGGGTGAGACGGGCTACGACG
ACCTTTCCAGGCACACTTGGTGGAGCAGAGACAGATGTGTCACACGCCTG
AACGCCGACCACTTCATCAGGACTCTCAAGTGCAGCGGGCATGCGGGGTA
CATCATGAGTAGACACACCAAACTTCAAGACACCGAACTCATCATCAGAA
CGTTCATGCACAGCAGGCACGCGGGGAACACCAGGCATTGACACATGAAA
CTCCGCACTCGTGAACACGTCAGACTTCGAAAAAACAACATCCTTCTCAA
AATCAATCTTAGACTTGCCTCGAGGGCACACGCCACGTGCCACGAAGAGA
TGCAGGGGGGAATCGCCGGCTGGAGGTAGAGCGTCGCCTGGAGCTGGAGA
GAGGAAGGAGGAGGAAGAGGTCGCCTGGGGTGCTCTGTAGTGCTGCTGCT
GCTCATGCTGCTGCGAGGTGTCGAAGGCCTCGTAGGCTCGCGGTTGTTGT
GCGTCCGGTCCAGCAGCAGAAGGAAAGTGTGGTACATTGCTCACTTCTTG
CTGCTGGTAGAGCCCTCCGCCGTCGGGAAATTGGTGGAAACCGTATCCCC
CGCCGGCGGCGCTGCCGTAGGGACCTCCGCCATGATCCACTCCGTGAGCC
GCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNAATCTGCGCGGGAGGAACGTTAGGCGGCGGATAATTACCAC
CACGGCCGCCCACCTGACGACCTCGGCTCTCCGGGGGGGAAGGACCGTAG
CCACCATACCCACGCCCCCCAGAGTTGCACCCCTGCAGCTGTCCTCCAGT
TCCGGATCCTTGCCCACGCGGCGGTCCCGGCAGCGCTGGAGAGTGGCCCC
GACTCCAGCCCGCACCTTGCTCGTTTTGGTACGGCTGCTGTCGACATGGG
CCACCAACCATCCGCCCCGAGTCTTGGGCTCCGCCTCGAGCAAAGACCGA
TGCCTGGGCCTCCCGCCTCCCGCTCATGTACGCGCAGAACTCGTTGTAGT
GGGCGAGGAATTTGTTGCGTAATTTGTGACATTCGGAGGTCTCGTGGGTG
CTGTTGGGGCCGTGGAGCTGGCAGAAGTGCGATGGTTGCTGCTGATGTGG
CTGCACCGACCTTTGTGGTTGCTGGAGTCGATGTCCGCCTTGCTCCGATC
CTGCAGCGGCTGGTTTCCCCTCCTCGCCACTCCCGCCCACGCCGGCAGCG
ACGAGGGCGTTCCTCATCTCTTCCTTCCCCTCTCCAGCTCTCCGCTTGTA
CCTCAGCTCGTGCTCTTCCAACCTCAGCATCTCCTGCATTGTAGCCCTCG
ACAACATCGAATCAAACAGAAGACGGTCTTAAGTTTTCTCATACCTTGGG
AGAAATCCCCGGACTATGTGTCTGCACATCGACTTTTCATCCCTGTTATC
ACCATACGATCCAAGTCTCATCCACAGCGCAACTGCCCTACCGCAATAGT
CCATAAGACTCTCTCCTTGCCTCTGGCCTATTACGTTCCATGCGTCGTCA
AGAGTTTGTCGCTCCTGACTCTTGTCCTGGCTGTATTGTTCGAGAAACAC
GCGGTACCCTGCTTGAGGTGATTCTGATGCCAAGATTTGGGCTTGTACGG
GTTGTGCTGTGATCTTAGCTAGCATAAACGTCCAAATCTTCCTGGATTGC
TTCACTCTTTCCTCTCCGAACGTGCTGCTCAACCAATTCAAATCCACACC
AGCTGCACCAATAGGGACCTCTGAACTCCCCATCACACCAGCAAGTCCCT
CACTCTCCAGCCACGCTTCAAAAGCACTCGTGAACACTCGCAATGCAACT
TCGATCGATCTGTTCTTCAGATAATCATCACTCCATACTGGTACATCTAT
CTTTTCTCTCTGCCTCAGTTCTAAGATCTGGTTGTTAGACGTGCCTGAGT
GGGCACGGCGCCCCTGGTCATGAGTT

Coding sequence (CDS) from alignment at Scaffold_598:398103..400528-

>EsuBft1089_2a-0001 ID=EsuBft1089_2a-0001|Name=EsuBft1089_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_598:398103..400528- (Ectocarpus subulatus male Bft15b)
ATGCCACAAAGGAAGAAGAACTCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN