EsuBft1089_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1089_13a-0001
Unique Name	EsuBft1089_13a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_598	contig	Scaffold_598:290683..291839 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	4558.Sb07g028153.1
ProteomeId	EsuBft1089_13
Protein domains	IPR001584
Protein domains	IPR025724
Protein domains	IPR012337
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	2
Max annot lvl	35493\|Streptophyta
Length	1087
Hectar predicted targeting category	other localisation
Evalue	2.44e-34
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,37THH@33090\|Viridiplantae,3GG2K@35493\|Streptophyta,3M2QC@4447\|Liliopsida,3IMWS@38820\|Poales
Date last modified	2016-06-13
Date creation	2016-06-13
Description	GAG-pre-integrase domain
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0003824
GO	0015074

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1089_13a	EsuBft1089_13a	Ectocarpus subulatus male Bft15b	gene	Scaffold_598 290683..291839 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1089_13a-0001-exon	agat-exon-94787	Ectocarpus subulatus male Bft15b	exon	Scaffold_598 290683..291722 +
EsuBft1089_13a-0001-exon	EsuBft1089_13a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_598 291793..291839 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1089_13a-0001-exon	agat-five_prime_utr-521	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_598 290683..290732 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1089_13a-0001-cds	EsuBft1089_13a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_598 290733..291722 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1089_13a-0001-exon	agat-three_prime_utr-832	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_598 291820..291839 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1089_13a-0001	EsuBft1089_13	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_598 290733..291819 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_598:290683..291839+
coding sequence from alignment at Scaffold_598:290683..291839+

spliced messenger RNA

>EsuBft1089_13a-0001 ID=EsuBft1089_13a-0001|Name=EsuBft1089_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1087bp|location=Sequence derived from alignment at Scaffold_598:290683..291839+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTGGCGGAGAAGTCGTCGGTCCTCTGAAACAACAGACTCAAGACCAAGGC
ATGTGCACCCTCGCCATCACATTCAAGGGCGATCCAGCGTCGACAAGCAA
GACACCCCCGAACAACCAAGAACCAGGGCGCAAGCCGAAGTTCGGAAAAC
CAGAAGCGGTACAGATCGATCACACTCCGCACGCGACAATCTCAGTGGCG
ATGAGCGTGAGCGCCGACCTCTGGCACCGGCGCCTCGGCCACATCAATCC
AAGTGCTATGGAGATTTTGCGGCGCTACCCCGCTACAGGTGTGAAATATG
ACGGATCTGTATCCCCGTGCGACAACTGCCACGTCACGAAGCACAAGAAG
GCTCCCGTCCGGAAGAAGACCAGCCGTGTCCTGACCAAACCAGGCCAACT
CGTCCAGTTCGACAACATGGGACCAATCGACCCGCCTGCGAAGTACAACG
GACGCACATACTCCTACGTCGCAAAAACGACCGACGTCTTTACCAGAATG
CGGGAAGTGTATCTACTGCGCGACAGGACCGAAACCACGCAAGCTCTGCA
CGCCTACAACATGCAAGTTGCATCTGAAGGCTACAGCATCGAGGTTCTAC
GCTGTGACAAAGGGGGAGAGAACCCTGGGGAAGAAATGCGCAACTACTGT
AGGGAGTCTGCGATCAAGCTGGAATTCGCCGCGACCAACACGCCCCAAGA
AATCGGAGTGTCAGAAAGGGATGGCCAGACACTTGCGGCTGTGACTCGAG
CTCTACTGCGCGATGGAGACTTCCCAAAACACATGTGGGGGGAGCTCATG
ATGACTACAGCATATCTGACCAACAGGATCGCACACGCGGCGCTAGGGGG
AGCCACGCCGTATTCCAAGATGTACAACACAACTCCGGACCTTTCTCGAC
TTCGTGCCATCGGCGCCCGCGCGTACGTTCATCACGAGCGATACAAGAAG
AAGCTAGACGATCGGGCCTTTGAAGGCAAGCTCTGCGGTTACGGACCTGA
CAGCAAGACGTACCGGATCTACGTGGAGGGCAAAGACAAGACCGTCTCGG
ATATGAACAAGATGTGATGAACTTCACGTCATTGCTC

protein sequence of EsuBft1089_13a-0001

>EsuBft1089_13 ID=EsuBft1089_13|Name=EsuBft1089_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=338bp
MCTLAITFKGDPASTSKTPPNNQEPGRKPKFGKPEAVQIDHTPHATISVA
MSVSADLWHRRLGHINPSAMEILRRYPATGVKYDGSVSPCDNCHVTKHKK
APVRKKTSRVLTKPGQLVQFDNMGPIDPPAKYNGRTYSYVAKTTDVFTRM
REVYLLRDRTETTQALHAYNMQVASEGYSIEVLRCDKGGENPGEEMRNYC
RESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELM
MTTAYLTNRIAHAALGGATPYSKMYNTTPDLSRLRAIGARAYVHHERYKK
KLDDRAFEGKLCGYGPDSKTYRIYVEGKDKTVSDMNKM

mRNA from alignment at Scaffold_598:290683..291839+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1089_13a-0001 ID=EsuBft1089_13a-0001|Name=EsuBft1089_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1157bp|location=Sequence derived from alignment at Scaffold_598:290683..291839+ (Ectocarpus subulatus male Bft15b)
TTGGCGGAGAAGTCGTCGGTCCTCTGAAACAACAGACTCAAGACCAAGGC
ATGTGCACCCTCGCCATCACATTCAAGGGCGATCCAGCGTCGACAAGCAA
GACACCCCCGAACAACCAAGAACCAGGGCGCAAGCCGAAGTTCGGAAAAC
CAGAAGCGGTACAGATCGATCACACTCCGCACGCGACAATCTCAGTGGCG
ATGAGCGTGAGCGCCGACCTCTGGCACCGGCGCCTCGGCCACATCAATCC
AAGTGCTATGGAGATTTTGCGGCGCTACCCCGCTACAGGTGTGAAATATG
ACGGATCTGTATCCCCGTGCGACAACTGCCACGTCACGAAGCACAAGAAG
GCTCCCGTCCGGAAGAAGACCAGCCGTGTCCTGACCAAACCAGGCCAACT
CGTCCAGTTCGACAACATGGGACCAATCGACCCGCCTGCGAAGTACAACG
GACGCACATACTCCTACGTCGCAAAAACGACCGACGTCTTTACCAGAATG
CGGGAAGTGTATCTACTGCGCGACAGGACCGAAACCACGCAAGCTCTGCA
CGCCTACAACATGCAAGTTGCATCTGAAGGCTACAGCATCGAGGTTCTAC
GCTGTGACAAAGGGGGAGAGAACCCTGGGGAAGAAATGCGCAACTACTGT
AGGGAGTCTGCGATCAAGCTGGAATTCGCCGCGACCAACACGCCCCAAGA
AATCGGAGTGTCAGAAAGGGATGGCCAGACACTTGCGGCTGTGACTCGAG
CTCTACTGCGCGATGGAGACTTCCCAAAACACATGTGGGGGGAGCTCATG
ATGACTACAGCATATCTGACCAACAGGATCGCACACGCGGCGCTAGGGGG
AGCCACGCCGTATTCCAAGATGTACAACACAACTCCGGACCTTTCTCGAC
TTCGTGCCATCGGCGCCCGCGCGTACGTTCATCACGAGCGATACAAGAAG
AAGCTAGACGATCGGGCCTTTGAAGGCAAGCTCTGCGGTTACGGACCTGA
CAGCAAGACGTACCGGATCTACGTGGAGGGCAAAGACAAGGTCTACGAGA
GCCGGAACGTGACTTTCATCGAGACTCCACCCAACACCATCCCCCCTCAC
CGGTGGGAAGACCGTCTCGGATATGAACAAGATGTGATGAACTTCACGTC
ATTGCTC

Coding sequence (CDS) from alignment at Scaffold_598:290683..291839+

>EsuBft1089_13a-0001 ID=EsuBft1089_13a-0001|Name=EsuBft1089_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1017bp|location=Sequence derived from alignment at Scaffold_598:290683..291839+ (Ectocarpus subulatus male Bft15b)
ATGTGCACCCTCGCCATCACATTCAAGGGCGATCCAGCGTCGACAAGCAA
GACACCCCCGAACAACCAAGAACCAGGGCGCAAGCCGAAGTTCGGAAAAC
CAGAAGCGGTACAGATCGATCACACTCCGCACGCGACAATCTCAGTGGCG
ATGAGCGTGAGCGCCGACCTCTGGCACCGGCGCCTCGGCCACATCAATCC
AAGTGCTATGGAGATTTTGCGGCGCTACCCCGCTACAGGTGTGAAATATG
ACGGATCTGTATCCCCGTGCGACAACTGCCACGTCACGAAGCACAAGAAG
GCTCCCGTCCGGAAGAAGACCAGCCGTGTCCTGACCAAACCAGGCCAACT
CGTCCAGTTCGACAACATGGGACCAATCGACCCGCCTGCGAAGTACAACG
GACGCACATACTCCTACGTCGCAAAAACGACCGACGTCTTTACCAGAATG
CGGGAAGTGTATCTACTGCGCGACAGGACCGAAACCACGCAAGCTCTGCA
CGCCTACAACATGCAAGTTGCATCTGAAGGCTACAGCATCGAGGTTCTAC
GCTGTGACAAAGGGGGAGAGAACCCTGGGGAAGAAATGCGCAACTACTGT
AGGGAGTCTGCGATCAAGCTGGAATTCGCCGCGACCAACACGCCCCAAGA
AATCGGAGTGTCAGAAAGGGATGGCCAGACACTTGCGGCTGTGACTCGAG
CTCTACTGCGCGATGGAGACTTCCCAAAACACATGTGGGGGGAGCTCATG
ATGACTACAGCATATCTGACCAACAGGATCGCACACGCGGCGCTAGGGGG
AGCCACGCCGTATTCCAAGATGTACAACACAACTCCGGACCTTTCTCGAC
TTCGTGCCATCGGCGCCCGCGCGTACGTTCATCACGAGCGATACAAGAAG
AAGCTAGACGATCGGGCCTTTGAAGGCAAGCTCTGCGGTTACGGACCTGA
CAGCAAGACGTACCGGATCTACGTGGAGGGCAAAGACAAGACCGTCTCGG
ATATGAACAAGATGTGA