EsuBft1089_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1089_12a-0001
Unique Name	EsuBft1089_12a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_598	contig	Scaffold_598:291933..301703 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	7668.SPU_021140-tr
ProteomeId	EsuBft1089_12
Protein domains	SignalP-noTM
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Max annot lvl	33208\|Metazoa
Length	140
Hectar predicted targeting category	other localisation
Evalue	5.02e-08
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,39MXZ@33154\|Opisthokonta,3CPHC@33208\|Metazoa,3E5NA@33213\|Bilateria
Date last modified	2016-06-13
Date creation	2016-06-13
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1089_12a	EsuBft1089_12a	Ectocarpus subulatus male Bft15b	gene	Scaffold_598 291933..301703 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1089_12a-0001	EsuBft1089_12	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_598 293607..301703 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1089_12a-0001-exon	EsuBft1089_12a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_598 291933..292064 -
EsuBft1089_12a-0001-exon	agat-exon-94786	Ectocarpus subulatus male Bft15b	exon	Scaffold_598 293230..293713 -
EsuBft1089_12a-0001-exon	agat-exon-94784	Ectocarpus subulatus male Bft15b	exon	Scaffold_598 300648..300869 -
EsuBft1089_12a-0001-exon	agat-exon-94785	Ectocarpus subulatus male Bft15b	exon	Scaffold_598 301133..301703 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1089_12a-0001-exon	agat-three_prime_utr-830	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_598 291933..292064 -
EsuBft1089_12a-0001-exon	agat-three_prime_utr-831	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_598 293230..293606 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1089_12a-0001-cds	EsuBft1089_12a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_598 293607..293713 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_598:291933..301703-
coding sequence from alignment at Scaffold_598:291933..301703-

spliced messenger RNA

>EsuBft1089_12a-0001 ID=EsuBft1089_12a-0001|Name=EsuBft1089_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1409bp|location=Sequence derived from alignment at Scaffold_598:291933..301703- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGACACGGATGTGTGATATCCCCACTGCTGTTCAACATCTTCTTCGC
CGAGGTCCTCGAGGTCGTCGTCATCCGATTCAGCGAGGATGATATTGTTC
TGCGGAGCCTGGTGTGCTTGGAGGAGGGGAAGACGGAAGCAGGGGGGGGG
GAGGAGACACCCCTTGACCGAGTTCGGAGGGCAGTATGGGGGATGCTGAA
TGCCGATGATGCCGGCGTTGTATCGAGGTCTGCAGAAGGACTGGCGAGAA
TGATGACCATCACCGTTGAGGTGTTCGGGGAGTTTGGGCTAACGGTGTCG
GAGAGGAAGACGGAGACGCTCCTGATGCGCGCGAAGGACAAGCCGACTAC
AACATCACAGCCCCCCTCGCCTCCACCGCTGACCATCGAAGCCGCGGGAC
AGAAATACGCCCAGACGACCGAGTTCCGGTACCTCGGTGGCCTCGTCAAC
GAACATGGCGACCTCACCCGGGAGATCAACTACAGGAGCAGAGGAGCGTG
GGCGTGCCTCAGGCGATATGGCCGGGAGCTCTTCGACAGACCGAAAGCGT
CACTCCGACTCAAGATCCGCTGGGGGGAAACGCGACGTAGGGGGAGACAG
GAACAGGACTGGCCGAAATGTGTGCTCGACGACCTGAAGGCATTCGGGGC
CGACCACGGATCTACGAAAACCGATCCATGTTGTCTCGGAATCCTGGTAC
CGAAAGACACGGCGCCGAAGTTAAAGTGGACGGAAGCCGCGAAGGTGGAG
GGGGGAGTGCCCTGGCATGCGGCGGTGCTCAGGGAGCTGAGAGACTGCCT
CGCGAGCACTGAAGCTCAGCGCTTGAAGTTCGGCCTCCACGGTGTTCTGT
GCTGCGAGAGTATGTGCCTTGGTTCCGTAGCTGATCAGTCCCCGTCCTAG
GAAGAACAGGTATCCGTTGGTAGACCTACCGTTGTCTGGGTTGGCTCCAG
ATGACGAGTCAGTGAAGCACGAGAGTCTGAATTGCCCCTTCTTGTACACG
ATCGGCAGGTCCGGCGTTCCGCGTAGGTACCGTAGTAGGTGCTTGGCCGC
AGCCATGTGGACCTGTGCTGGGTTTGCGCATGCCCGTGTCAGTTGGTGCA
CTGCGTATGACAGATCGTAGCGGGTGCATTGGGCAAGGTACAGGGGACTC
CCGGTGATGGCCTGGCACCTCTGCTTGTCCTCGGGTCCGAGTAGTTGGTC
TTGTGGCTGCTCGGTTGATAGCTCTGCTCCATACCCGAAGGTGCTGACCG
GGTTTGCCTGTTCCTTTCCGTATCGCTTGTCGTGTCCTGCGATGTCCTGG
ATGGTGTCGTAGTCCGCGAGTTGTCATTGCTGTCATCTCCCCCAGCAGCA
AAGTAGTCGTCGGAATCCGTGCCCGCGTTGTTTTGCCGAAGTTCTGCTCG
GTCGATGTT

protein sequence of EsuBft1089_12a-0001

>EsuBft1089_12 ID=EsuBft1089_12|Name=EsuBft1089_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=299bp
MRHGCVISPLLFNIFFAEVLEVVVIRFSEDDIVLRSLVCLEEGKTEAGGG
EETPLDRVRRAVWGMLNADDAGVVSRSAEGLARMMTITVEVFGEFGLTVS
ERKTETLLMRAKDKPTTTSQPPSPPPLTIEAAGQKYAQTTEFRYLGGLVN
EHGDLTREINYRSRGAWACLRRYGRELFDRPKASLRLKIRWGETRRRGRQ
EQDWPKCVLDDLKAFGADHGSTKTDPCCLGILVPKDTAPKLKWTEAAKVE
GGVPWHAAVLRELRDCLASTEAQRLKFGLHGVLCCESMCLGSVADQSPS

mRNA from alignment at Scaffold_598:291933..301703-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1089_12a-0001 ID=EsuBft1089_12a-0001|Name=EsuBft1089_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=9771bp|location=Sequence derived from alignment at Scaffold_598:291933..301703- (Ectocarpus subulatus male Bft15b)
ATGCGACACGGATGTGTGATATCCCCACTGCTGTTCAACATCTTCTTCGC
CGAGGTCCTCGAGGTCGTCGTCATCCGATTCAGCGAGGATGATATTGTTC
TGCGGAGCCTGGTGTGCTTGGAGGAGGGGAAGACGGAAGCAGGGGGGGGG
GAGGAGACACCCCTTGACCGAGTTCGGAGGGCAGTATGGGGGATGCTGAA
TGCCGATGATGCCGGCGTTGTATCGAGGTCTGCAGAAGGACTGGCGAGAA
TGATGACCATCACCGTTGAGGTGTTCGGGGAGTTTGGGCTAACGGTGTCG
GAGAGGAAGACGGAGACGCTCCTGATGCGCGCGAAGGACAAGCCGACTAC
AACATCACAGCCCCCCTCGCCTCCACCGCTGACCATCGAAGCCGCGGGAC
AGAAATACGCCCAGACGACCGAGTTCCGGTACCTCGGTGGCCTCGTCAAC
GAACATGGCGACCTCACCCGGGAGATCAACTACAGGAGCAGAGGAGCGTG
GGCGTGCCTCAGGCGATATGGCCGGGAGCTCTTCGACAGACCGAAAGCGT
CACTCCGACTCAAGATCCGCTGTACGGCTGCATGACATGGTCACCACTCG
GCGATACCTATCAGACGCTGCGGTCGATACACCACCGACTGCTCCTTCGA
GTTATCGGGTACAAGCGCAAGAAAGACACCTACCGGCAGCTCTCTTACGC
CCAGACGCTGAAGAGGGTCGAATGCCAGAGCGTTGAAACCGCGATCCGAC
AACGACGCGTACTGTTCGCGGGAGCATTGGCAACGCAACCGGACGGGCGA
CTCCCGAAATGACTGATGCTCTGCGAACTGGCAGGGGGGGAAACGCGACG
TAGGGGGAGACAGGAACAGGACTGGCCGAAATGTGTGCTCGACGACCTGA
AGGCATTCGGGGCCGACCACGGATCTACGAAAACCGATCCATGTTGTCTC
GGAATCCTGGTACCGAAAGACACGGCGCCGAAGTTAAAGTGGACGGAAGC
CGCGAAGGTGGAGGGGGGAGTGCCCTGGCATGCGGCGGTGCTCAGGGAGC
TGAGAGGTTCATGACCTCCTGGCACGAGAAGGAAGAAGAGGCCAGCCGAC
AACCGGCGCTCAAACGAAACCACAAGCCAACAACCAATGGGGCGGTAGGG
AGGCAGGAGACGGACGAGACGGCGAGGGAACAAAGCAAACGAAAAGAGAC
GGAGCGAGTGGCGCGATACGTCCCGGTTTGAATTTCTTTTAGCCAATTCC
CCCCCACGCCTCGCTTGGCAACGACGTTGTAAAACAAGCCGCCCCCCCCG
GTGTTTGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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CTGTCACCGCTCTATCACAGAGGTTGGTCTACACTGCTGTGAGATCGGTA
GGCCCGAGCGAGCTCTGGAAAGAGAAATGCAGATAGATTTTCTTATCAAC
TGACTCCCTGGTCAGGCTTTGATGGGTGCTAGATGAGAGTGAGAGGTGGT
GAGCGTAGGGCTGCACCACTCTCGTCGAATACCGGACAAATACGCCAATC
ACACAAGAGATCTAGAATGCTTCCAGAATGATTCTGGAAGCCCTTCTACG
TCCTAGAAAAGTCGCAAGTGCAACCTAGGTCTAGAACGCTTCCAGAAGGT
TTCCAGAAGCTACATACGTTCTACGTAGATATGCTGGTCGACCTTGGACT
AGCATGCTTCCGGAATATTTCTAGAACAAGAGAACACATGCTCAGTCTCG
CCTGCCAAATTATCTCCGCTACAACTCTGTGCTCATGTTCTCTGCTAAGT
ACCATCTCTTCTTTCTGTATTATGTCTACGGAAGGCTAGTTGCCGAAGTC
GCACCTATGGTAAACTGTGCCTGACTACGTTGTAACAGTTTTCCTCGACG
CGACCTCTCGATTAGGCAAGTAGCCGATGTTCCAATAAAAAAGAAAAGAA
TAAAAAATCTTCACTTCGCTGCCAATTTTTGTGACCCCTCAATTCCCAAT
TCATATCAAAGAATATCGACCTCCTTATGAGTGAATCCATCCTGCGAGCA
AAACACGCGTTCGAAACATTCAACCATACTATGCGATTTTGTGCTTAATA
TCTCCTAGCACTTGTAATCCTTGACGAGGTGCATGATGGTGGCGAACTGC
TGCTTCGGGAGATGTTTCGTCGCGATGTCCGCCAACATCGTGGCACTAGG
TTGGTGGTGAAGAGTGATCCGGTGCCCTTTCGTGAGTTCCCTGAGGAAGA
AGAACCGGAGCGCGATGTGCTTGGTTCTAGAGCTGAACATCGCGTTGCTG
GCCACAGTCAATGCTCCGGTGCTGTCGCTGTTGATGGGTACCGATCGAAA
GGTCTTGAATCCGATTTCCGTCATGAAGTTGGAGATGTAGACTGCCTCGC
GAGCACTGAAGCTCAGCGCTTGAAGTTCGGCCTCCACGGTGTTCTGTGCT
GCGAGAGTATGTGCCTTGGTTCCGTAGCTGATCAGTCCCCGTCCTAGGAA
GAACAGGTATCCGTTGGTAGACCTACCGTTGTCTGGGTTGGCTCCAGATG
ACGAGTCAGTGAAGCACGAGAGTCTGAATTGCCCCTTCTTGTACACGATC
GGCAGGTCCGGCGTTCCGCGTAGGTACCGTAGTAGGTGCTTGGCCGCAGC
CATGTGGACCTGTGCTGGGTTTGCGCATGCCCGTGTCAGTTGGTGCACTG
CGTATGACAGATCGTAGCGGGTGCATTGGGCAAGGTACAGGGGACTCCCG
GTGATGGCCTGGCACCTCTGCTTGTCCTCGGGTCCGAGTAGTTGGTCTTG
TGGCTGCTCGGTTGATAGCTCTGCTCCATACCCGAAGGTGCTGACCGGGT
TTGCCTGTTCCTTTCCGTATCGCTGTAGGATATCTCTCGCGTAGGGTCCT
TGCGATATGGCTAGTGTGCCATGTTCGTAGTCCCGCTGGACTTCGATGCC
GATTACGCGCTTGATCTCTCCCATGCCTGTCATTTCGAAGCTGTCCATGA
GTTTCTTCTTTTTCCTGCTTACGATCTCCTTGTTTCCGCCCGTGATGAGG
ATGTCATCGACGTAGATCGCGAGGATTGTGAGTTCGTCCCCGCTTACGAA
GATGTAGACACAGGGGTCAGAGCGAGTGCGCTGCCAGCCGAAGATGATGA
GTCTGTCATTGATGGCGTCGTTCCACAGTGACGGGGACTGTGACAGGCCG
TACAGACTTTTATCCAGTTTGTAGATCATTTCACCTGTCGTGGGGTCCCT
CTCCTCGTCGCTTGGCGCCGGCCTCACGTAAGCGACTCTGTCGGTGTACG
CGTTCAGGAATGCAGCTACCACGTTCAATTCGTACACCTCCTATCCGTGT
TCCCAAGCGATGGCGAATAGCATGCGGATGCTACCCAATCGGGTGACTGG
AGCGTAGTTCCTTCCGCAGTGTCGTCCTGCCAGTTGGCGGTGTCCCCCGG
CGACTAAGCGGGCCTTGAAGCGGCTATCGGTCTTGATCTTGAACACGAAG
CGTGTGTCGAAGATGCTCTCATCCTTCGGTACCAGTCTGATGCGTACTTT
CTTGTAGACTTTGTGCTTGGCAAGATTACCTATCTCGGTGTCGATAGCGC
TCTTCCACTGCTCGCGTTGTGGTGAGTTCATGGCTTCGGTGTACGTGCTC
GGAGTTTTGATCTCTTGGTTTGTCTCCCCCAAGAACCCTTTGCTCGAGGT
GCCTGTGGCGTAAGCATACGCCCGGGATTCGGCGAAGGGGTTTTCATCCA
GGTGAGCAAAATCCGCCGCGTCGGTAGGGCATCGTTGCTGCGCTTGGTAG
GTGAGATCGAGTAGTTGATCCTCGGTGAGCTCCAGTGGGCCGGGGTGGCT
GACAGCCATGGTAGGGCGGCCTCTGTCGTTCATGTTCACTTCCAAAGATT
TCGGGATGCATGAAGGGTCGATAGGGTCATCTGTGGGTTGGTGAGTGCGC
GTGGCAGGACGGGTCACCGTTAATCGACGCATTGAGATGGGGGCTGGCGA
AGCGGAGTCCGTGTCTGTTGGCGTCGTGGGTGATTCGAGTGTCGTGTCCT
GCGATGTCCTGGATGGTGTCGTAGTCCGCGAGTTGTCATTGCTGTCATCT
CCCCCAGCAGCAAAGTAGTCGTCGGAATCCGTGCCCGCGTTGTTTTGCCG
AAGTTCTGCTCGGTCGATGTT

Coding sequence (CDS) from alignment at Scaffold_598:291933..301703-

>EsuBft1089_12a-0001 ID=EsuBft1089_12a-0001|Name=EsuBft1089_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=900bp|location=Sequence derived from alignment at Scaffold_598:291933..301703- (Ectocarpus subulatus male Bft15b)
ATGCGACACGGATGTGTGATATCCCCACTGCTGTTCAACATCTTCTTCGC
CGAGGTCCTCGAGGTCGTCGTCATCCGATTCAGCGAGGATGATATTGTTC
TGCGGAGCCTGGTGTGCTTGGAGGAGGGGAAGACGGAAGCAGGGGGGGGG
GAGGAGACACCCCTTGACCGAGTTCGGAGGGCAGTATGGGGGATGCTGAA
TGCCGATGATGCCGGCGTTGTATCGAGGTCTGCAGAAGGACTGGCGAGAA
TGATGACCATCACCGTTGAGGTGTTCGGGGAGTTTGGGCTAACGGTGTCG
GAGAGGAAGACGGAGACGCTCCTGATGCGCGCGAAGGACAAGCCGACTAC
AACATCACAGCCCCCCTCGCCTCCACCGCTGACCATCGAAGCCGCGGGAC
AGAAATACGCCCAGACGACCGAGTTCCGGTACCTCGGTGGCCTCGTCAAC
GAACATGGCGACCTCACCCGGGAGATCAACTACAGGAGCAGAGGAGCGTG
GGCGTGCCTCAGGCGATATGGCCGGGAGCTCTTCGACAGACCGAAAGCGT
CACTCCGACTCAAGATCCGCTGGGGGGAAACGCGACGTAGGGGGAGACAG
GAACAGGACTGGCCGAAATGTGTGCTCGACGACCTGAAGGCATTCGGGGC
CGACCACGGATCTACGAAAACCGATCCATGTTGTCTCGGAATCCTGGTAC
CGAAAGACACGGCGCCGAAGTTAAAGTGGACGGAAGCCGCGAAGGTGGAG
GGGGGAGTGCCCTGGCATGCGGCGGTGCTCAGGGAGCTGAGAGACTGCCT
CGCGAGCACTGAAGCTCAGCGCTTGAAGTTCGGCCTCCACGGTGTTCTGT
GCTGCGAGAGTATGTGCCTTGGTTCCGTAGCTGATCAGTCCCCGTCCTAG