EsuBft1089_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1089_11a-0001
Unique Name	EsuBft1089_11a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_598	contig	Scaffold_598:301896..305015 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1089_11
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	260
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1089_11a	EsuBft1089_11a	Ectocarpus subulatus male Bft15b	gene	Scaffold_598 301896..305015 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1089_11a-0001-exon	EsuBft1089_11a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_598 301896..301910 +
EsuBft1089_11a-0001-exon	agat-exon-94783	Ectocarpus subulatus male Bft15b	exon	Scaffold_598 302431..305015 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1089_11a-0001-cds	EsuBft1089_11a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_598 301896..301910 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1089_11a-0001-exon	agat-three_prime_utr-829	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_598 302917..305015 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1089_11a-0001	EsuBft1089_11	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_598 301896..302916 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_598:301896..305015+
coding sequence from alignment at Scaffold_598:301896..305015+

spliced messenger RNA

>EsuBft1089_11a-0001 ID=EsuBft1089_11a-0001|Name=EsuBft1089_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2600bp|location=Sequence derived from alignment at Scaffold_598:301896..305015+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGCTGCAGAACCGAGGCCGGCGGCTGCGGCTCGTCGACGGCCGTC
CCTCGGGCGCAAGCCCACGGGGACCCCATACGTCCCCGCGCTCAGCCGTT
TCCTCTTCCACGACGACGGCCGCGTCACCCCCAGCACCCACGCCTACCGC
CCAGAGTCCACCAGGGGAGGCGGCGGCCACCGTGGATTGGCCGGCCACGC
GGCGGCGCCGCAGGCGTGGTCGTTCAAGGTCAAGCGGCCGGCTCCCAGAC
CCCCGGATGGCCCCGGGCTAGGCACGCGCAGGCCTGCTTACAACAACGAG
ACCGATCCCTGCTGCTCGTCTTCTCCAGCCGGGGTGAGGTTTGGGGCCGG
ACGCGAGGACATGTCCAGTAGTGTTTCGGGGGTCTCGTGGGTGGAGGCGG
AGGAGAGGGCGGCGAGGGGGGAGGCGGGCGGCCGGAGTGCGAGGCTGTAC
CTCCCCGACAGGGACCGCATGGGCTCGAGAGCGTTCATGTGCTCGAGGTA
GTTGCCCAGGCCGGGGACCCAAGGGCCTAGGTAGCAGATAGTCGTCCGTT
TCATGATGTGTGTGTGTTCATTTTTAGCATCTAGTCGTTCGTTTTATGAT
GCGTTTGTATTTATTGTTCGCATCGACCGCGCTAACCGGTTGACCAATGA
AAAAACGTCAGTCTTAGTGCGGTTGAAAACACAAAACACTCCGATCTATC
TGCCATGAGCTGGGACCCCGTGAAGGGGCAGCATGGGGGTGGCTAAACTA
TCCTCCGGATCAAAGACAGAAACGGTATCAACAGGAGAAAACTACACGCG
TCTACCAAGGCTGTTACCCTGCACTCGAGTTCGTTTTGGAGTGCTTTCAC
CACTATGTCTTTATTTGTTTTGCATCGACCAGCCCATTTTTATAAATAAC
AACATATTCGCCTGATTGAGAGCGTAGCATCTGATTCAGAGCGAGATTGC
GCGATACGCTGTAGCCGGAAAACCACTGAGAGGTGGAGCTTGCTGTGTAG
CTTGAATTGAAGGGCTAGCCCGTAGCTTCAAGCCGCTACCCTGGTCATCC
TGTGGGAGTCTCTCGTTGTGGAGCTACAGCGGGGAGCAGAAGCTACAGCA
GAGCCCACCGCCCGACGCGATACCGCCCTGAAACAGTTTGAGCAGAAATA
GCCAATCTGGGCAAATCTAGCAACTTGTCTAGCTCCTCGCTGCAGCATCC
GATGACGATGACACGCATATGCTCGCGAAGCTGCTGATGAGACCTTCAAT
TTGCACCGCATCTTGGAATAGCCCGTCCCCTACTTGCCAAGAAATGGCAA
GAGGCGTCTGGACCCGAAATTTCAATTTTTTTGGCTCTCGCTCTCAATCA
GATACTTCGCTCTCAATCAGGCGAATATGTTGTTAAATGTCGTCAGTCTC
CAGCGAAGCCAGCACAGAATGAGTTGTGTGCTACAATAGGACCTTCCCCA
CTAAAAAAACATCCAATACGCGTTGGTTCTCCTTCACACGACTGCATTGT
GTCGTATGATGTGTTGTTGTTTTGGATGCAGCAAGGTTGGGACGCACCTC
TTGGCAAACGTCACCCGCACTATAGCAACAAACGTTGCTGCTGTATGTAG
GGCTCACAACGACGAACGTAGACGTCACAGGCGGACCAGTCCAACACATC
ACGGCTGAACGACCATGTGGGTGAAATCACCCGTCATCCAAGGACCTTTG
GTCGTCCCGGCTCAAGTTTGTTTTTTGCCAACAATTGATGTGTAGCTGAA
AGCTGTGTGCGTCTTGCATCTCATCTAATCTGAACGTCATTGTTCCACGT
CTGGGCATGTTTGGAAGCGGAAATCAGGGGTCATACAGAAGGACTCCGCA
CGGCAGCTTTTCGTGATGGGTAGAGCCAAATAGAACATGCTTGATGATGG
CCTTGCAGTACGGTCACAGAAAGGACGATGAGCCTCGAAATGGGAGCGAG
AGTTTGGCGCGGACATCTCTATGGTCCATGCACAACAATCTGAGATTCCC
TCCCGTATCGGCATAACTTGATGTGTTCTTACAAATACCTTTGGCGCCGA
AGCAAAAAAATGTACCAGGTAGAGCAGTAGCTACTCGCACGAAAACTTAG
TGTTCCTCCAAAAGACATCAAATGCTTTAGTGGCGATTGGCGTGAGGAAT
CATTTGCCGCATTCTTCTTCGAAAACCTTACTACAGCGGGATCTAGCACA
TTGCGTCCTCAAACCAAAAACCAAAAAACACCCATCCAACCAAGGCCAAA
ACAAAACACACACTAGGCTAATCTATGCATAATATCGGCGTGAAAACTTC
TGAAATCTGATATTTGTGAATGTAGTCAATTAAACAAAGCAAAGTCTTTC
GCTTCGAGCAATGGACAACAGACTTGCGGGAAAAATGGGAACGTACCCAA
AAATGAGAATGGGCGTTTGTTTTTAGAAAGCAAACCACGCCTTTGCAACT
CCCCCCATAAAAGTTGACAGTGCTGTAGGTCTTTACAGCAGCTTTCGAAT
GAGCTGTTGCTCAAGCTGTATGTCCTCGGCATCGCCGAGGTAGCCAGCAT
CGCGAAAAATCAGGTCGAAACCAGCACGAATCGCTTTTTGCGCCCGTGAG

protein sequence of EsuBft1089_11a-0001

>EsuBft1089_11 ID=EsuBft1089_11|Name=EsuBft1089_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=166bp
MTAAEPRPAAAARRRPSLGRKPTGTPYVPALSRFLFHDDGRVTPSTHAYR
PESTRGGGGHRGLAGHAAAPQAWSFKVKRPAPRPPDGPGLGTRRPAYNNE
TDPCCSSSPAGVRFGAGREDMSSSVSGVSWVEAEERAARGEAGGRSARLY
LPDRDRMGSRAFMCSR

mRNA from alignment at Scaffold_598:301896..305015+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1089_11a-0001 ID=EsuBft1089_11a-0001|Name=EsuBft1089_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3120bp|location=Sequence derived from alignment at Scaffold_598:301896..305015+ (Ectocarpus subulatus male Bft15b)
ATGACGGCTGCAGAAGTAAGGGTTCTGCACTTACACTCAACCTTATCGCA
ACCACGGCTAGTACGCCGGTATGTAGGTGGACAGGGAATCGAATTTGGAC
CAGCACGCACGCACATTCGCTCGACGCTCACTCATCCTGGCACCCTTGGA
ACGGGTAGTAAAAAATTGGGTATGACACTACGGTCCAACCGCGATTTAGC
CCCGACATTATGTACACTAACTACCCATGAAGCACGCAGGGGTCGGGGGG
TAACACAGACCACAGAGCCAACATAAATCGAAGAATAATTCCTCTAGCAG
AATTGAAAGAAATGTGTTTTGATGCAAGCAGAGTACTACGTACGGTACAC
TTTTCAGTGTACTTTTCGTACAACTACCAACCATCCAGGGTCATACAGGA
GGGGGGCCCTTTTCTTCTTGATATATTTTTCGTGCCACACCTTCCTCCTG
CAAGGTTTAGGGTTAAGGTCTTCCGAGCGGTTTCCCAGGGACTCGGCCCT
GAGACCCGGCGTCGGGGACTACGACTTAAGGGCAGCCGAGGCCGGCGGCT
GCGGCTCGTCGACGGCCGTCCCTCGGGCGCAAGCCCACGGGGACCCCATA
CGTCCCCGCGCTCAGCCGTTTCCTCTTCCACGACGACGGCCGCGTCACCC
CCAGCACCCACGCCTACCGCCCAGAGTCCACCAGGGGAGGCGGCGGCCAC
CGTGGATTGGCCGGCCACGCGGCGGCGCCGCAGGCGTGGTCGTTCAAGGT
CAAGCGGCCGGCTCCCAGACCCCCGGATGGCCCCGGGCTAGGCACGCGCA
GGCCTGCTTACAACAACGAGACCGATCCCTGCTGCTCGTCTTCTCCAGCC
GGGGTGAGGTTTGGGGCCGGACGCGAGGACATGTCCAGTAGTGTTTCGGG
GGTCTCGTGGGTGGAGGCGGAGGAGAGGGCGGCGAGGGGGGAGGCGGGCG
GCCGGAGTGCGAGGCTGTACCTCCCCGACAGGGACCGCATGGGCTCGAGA
GCGTTCATGTGCTCGAGGTAGTTGCCCAGGCCGGGGACCCAAGGGCCTAG
GTAGCAGATAGTCGTCCGTTTCATGATGTGTGTGTGTTCATTTTTAGCAT
CTAGTCGTTCGTTTTATGATGCGTTTGTATTTATTGTTCGCATCGACCGC
GCTAACCGGTTGACCAATGAAAAAACGTCAGTCTTAGTGCGGTTGAAAAC
ACAAAACACTCCGATCTATCTGCCATGAGCTGGGACCCCGTGAAGGGGCA
GCATGGGGGTGGCTAAACTATCCTCCGGATCAAAGACAGAAACGGTATCA
ACAGGAGAAAACTACACGCGTCTACCAAGGCTGTTACCCTGCACTCGAGT
TCGTTTTGGAGTGCTTTCACCACTATGTCTTTATTTGTTTTGCATCGACC
AGCCCATTTTTATAAATAACAACATATTCGCCTGATTGAGAGCGTAGCAT
CTGATTCAGAGCGAGATTGCGCGATACGCTGTAGCCGGAAAACCACTGAG
AGGTGGAGCTTGCTGTGTAGCTTGAATTGAAGGGCTAGCCCGTAGCTTCA
AGCCGCTACCCTGGTCATCCTGTGGGAGTCTCTCGTTGTGGAGCTACAGC
GGGGAGCAGAAGCTACAGCAGAGCCCACCGCCCGACGCGATACCGCCCTG
AAACAGTTTGAGCAGAAATAGCCAATCTGGGCAAATCTAGCAACTTGTCT
AGCTCCTCGCTGCAGCATCCGATGACGATGACACGCATATGCTCGCGAAG
CTGCTGATGAGACCTTCAATTTGCACCGCATCTTGGAATAGCCCGTCCCC
TACTTGCCAAGAAATGGCAAGAGGCGTCTGGACCCGAAATTTCAATTTTT
TTGGCTCTCGCTCTCAATCAGATACTTCGCTCTCAATCAGGCGAATATGT
TGTTAAATGTCGTCAGTCTCCAGCGAAGCCAGCACAGAATGAGTTGTGTG
CTACAATAGGACCTTCCCCACTAAAAAAACATCCAATACGCGTTGGTTCT
CCTTCACACGACTGCATTGTGTCGTATGATGTGTTGTTGTTTTGGATGCA
GCAAGGTTGGGACGCACCTCTTGGCAAACGTCACCCGCACTATAGCAACA
AACGTTGCTGCTGTATGTAGGGCTCACAACGACGAACGTAGACGTCACAG
GCGGACCAGTCCAACACATCACGGCTGAACGACCATGTGGGTGAAATCAC
CCGTCATCCAAGGACCTTTGGTCGTCCCGGCTCAAGTTTGTTTTTTGCCA
ACAATTGATGTGTAGCTGAAAGCTGTGTGCGTCTTGCATCTCATCTAATC
TGAACGTCATTGTTCCACGTCTGGGCATGTTTGGAAGCGGAAATCAGGGG
TCATACAGAAGGACTCCGCACGGCAGCTTTTCGTGATGGGTAGAGCCAAA
TAGAACATGCTTGATGATGGCCTTGCAGTACGGTCACAGAAAGGACGATG
AGCCTCGAAATGGGAGCGAGAGTTTGGCGCGGACATCTCTATGGTCCATG
CACAACAATCTGAGATTCCCTCCCGTATCGGCATAACTTGATGTGTTCTT
ACAAATACCTTTGGCGCCGAAGCAAAAAAATGTACCAGGTAGAGCAGTAG
CTACTCGCACGAAAACTTAGTGTTCCTCCAAAAGACATCAAATGCTTTAG
TGGCGATTGGCGTGAGGAATCATTTGCCGCATTCTTCTTCGAAAACCTTA
CTACAGCGGGATCTAGCACATTGCGTCCTCAAACCAAAAACCAAAAAACA
CCCATCCAACCAAGGCCAAAACAAAACACACACTAGGCTAATCTATGCAT
AATATCGGCGTGAAAACTTCTGAAATCTGATATTTGTGAATGTAGTCAAT
TAAACAAAGCAAAGTCTTTCGCTTCGAGCAATGGACAACAGACTTGCGGG
AAAAATGGGAACGTACCCAAAAATGAGAATGGGCGTTTGTTTTTAGAAAG
CAAACCACGCCTTTGCAACTCCCCCCATAAAAGTTGACAGTGCTGTAGGT
CTTTACAGCAGCTTTCGAATGAGCTGTTGCTCAAGCTGTATGTCCTCGGC
ATCGCCGAGGTAGCCAGCATCGCGAAAAATCAGGTCGAAACCAGCACGAA
TCGCTTTTTGCGCCCGTGAG

Coding sequence (CDS) from alignment at Scaffold_598:301896..305015+

>EsuBft1089_11a-0001 ID=EsuBft1089_11a-0001|Name=EsuBft1089_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=501bp|location=Sequence derived from alignment at Scaffold_598:301896..305015+ (Ectocarpus subulatus male Bft15b)
ATGACGGCTGCAGAACCGAGGCCGGCGGCTGCGGCTCGTCGACGGCCGTC
CCTCGGGCGCAAGCCCACGGGGACCCCATACGTCCCCGCGCTCAGCCGTT
TCCTCTTCCACGACGACGGCCGCGTCACCCCCAGCACCCACGCCTACCGC
CCAGAGTCCACCAGGGGAGGCGGCGGCCACCGTGGATTGGCCGGCCACGC
GGCGGCGCCGCAGGCGTGGTCGTTCAAGGTCAAGCGGCCGGCTCCCAGAC
CCCCGGATGGCCCCGGGCTAGGCACGCGCAGGCCTGCTTACAACAACGAG
ACCGATCCCTGCTGCTCGTCTTCTCCAGCCGGGGTGAGGTTTGGGGCCGG
ACGCGAGGACATGTCCAGTAGTGTTTCGGGGGTCTCGTGGGTGGAGGCGG
AGGAGAGGGCGGCGAGGGGGGAGGCGGGCGGCCGGAGTGCGAGGCTGTAC
CTCCCCGACAGGGACCGCATGGGCTCGAGAGCGTTCATGTGCTCGAGGTA
G