EsuBft1089_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1089_10a-0001
Unique NameEsuBft1089_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_598contigScaffold_598:310151..310827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1089_10
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length49
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1089_10aEsuBft1089_10aEctocarpus subulatus male Bft15bgeneScaffold_598 310151..310827 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1089_10a-0001-exonagat-exon-94782Ectocarpus subulatus male Bft15bexonScaffold_598 310151..310621 -
EsuBft1089_10a-0001-exonEsuBft1089_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_598 310807..310827 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1089_10a-0001-exonagat-three_prime_utr-828Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_598 310151..310522 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1089_10a-0001-cdsEsuBft1089_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_598 310523..310621 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1089_10a-0001EsuBft1089_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_598 310523..310827 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1089_10a-0001 ID=EsuBft1089_10a-0001|Name=EsuBft1089_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=492bp|location=Sequence derived from alignment at Scaffold_598:310151..310827- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCTCACCTCTGTTTCTGAACACGGGGTGGCAGTGTCCGGGGTCTG
GGGGAACATGGGCTTGAGTGGGGGGTGCCTCAGAAAGAGCAAGACGGCGG
ATGTTTCTCTCTTGGTGTGACCGGTGGCAGTATCGATCAGCAATGCCGCA
CAGACTTTTGCGCGCCGAAATATGCGTGCGACAGCTTTAACCTAACCACT
TCGGTGGAAAGCGGATTTCTGTTCGATACGGTGTCAGGGTACCAGGGAAG
ACGGGGCCGAGTTTTGTTTGATTTCGGGTGGATGAGGTTGTGGTTTTGTT
CGTTTTTCTCCATCTAAGGTTCGTGCCTAGAGTTCAGCTGTAGTGTTTCA
AACAAAGTTTTGTTGACTTAGAGGCAAACATTCCTAGCTATTGGCATCGA
GTTAATTTGGCTTGGCATGACGGTCTTTACGATCGACTTTTTATGTATGT
CTGCATTTATCTGCAATTGTCGGAGGGCAAACAAAATAATTA
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protein sequence of EsuBft1089_10a-0001

>EsuBft1089_10 ID=EsuBft1089_10|Name=EsuBft1089_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=39bp
MVLTSVSEHGVAVSGVWGNMGLSGGCLRKSKTADVSLLV
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mRNA from alignment at Scaffold_598:310151..310827-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1089_10a-0001 ID=EsuBft1089_10a-0001|Name=EsuBft1089_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=677bp|location=Sequence derived from alignment at Scaffold_598:310151..310827- (Ectocarpus subulatus male Bft15b)
ATGGTGCTCACCTCTGTTTCTGTATACATACCCTATCGCTCAAAAGTCAC
CAATTTGATCTGCGCCAACATGATGAAACTGGCCAGCATGCTGTGCGGGA
CCACCACCGATTGAGGTTGACTGCGGGACCACCGATTGAGGTCGACTGCC
GGTCGTGCCAGCGGTGTTCGACCATACAATTGTGGTTGCAGGTGGCAAGG
AAGTAGGAACACGGGGTGGCAGTGTCCGGGGTCTGGGGGAACATGGGCTT
GAGTGGGGGGTGCCTCAGAAAGAGCAAGACGGCGGATGTTTCTCTCTTGG
TGTGACCGGTGGCAGTATCGATCAGCAATGCCGCACAGACTTTTGCGCGC
CGAAATATGCGTGCGACAGCTTTAACCTAACCACTTCGGTGGAAAGCGGA
TTTCTGTTCGATACGGTGTCAGGGTACCAGGGAAGACGGGGCCGAGTTTT
GTTTGATTTCGGGTGGATGAGGTTGTGGTTTTGTTCGTTTTTCTCCATCT
AAGGTTCGTGCCTAGAGTTCAGCTGTAGTGTTTCAAACAAAGTTTTGTTG
ACTTAGAGGCAAACATTCCTAGCTATTGGCATCGAGTTAATTTGGCTTGG
CATGACGGTCTTTACGATCGACTTTTTATGTATGTCTGCATTTATCTGCA
ATTGTCGGAGGGCAAACAAAATAATTA
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Coding sequence (CDS) from alignment at Scaffold_598:310151..310827-

>EsuBft1089_10a-0001 ID=EsuBft1089_10a-0001|Name=EsuBft1089_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=120bp|location=Sequence derived from alignment at Scaffold_598:310151..310827- (Ectocarpus subulatus male Bft15b)
ATGGTGCTCACCTCTGTTTCTGAACACGGGGTGGCAGTGTCCGGGGTCTG
GGGGAACATGGGCTTGAGTGGGGGGTGCCTCAGAAAGAGCAAGACGGCGG
ATGTTTCTCTCTTGGTGTGA
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