EsuBft1088_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1088_9a-0001
Unique Name	EsuBft1088_9a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_515	contig	Scaffold_515:210905..216206 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1088_9
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	280
Hectar predicted targeting category	other localisation
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-12_001610.1
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1088_9a	EsuBft1088_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_515 210905..216206 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1088_9a-0001	EsuBft1088_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_515 211178..214101 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1088_9a-0001-exon	agat-exon-12198	Ectocarpus subulatus male Bft15b	exon	Scaffold_515 210905..211200 +
EsuBft1088_9a-0001-exon	EsuBft1088_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_515 212982..213053 +
EsuBft1088_9a-0001-exon	agat-exon-12199	Ectocarpus subulatus male Bft15b	exon	Scaffold_515 213774..216206 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1088_9a-0001-exon	agat-five_prime_utr-520	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_515 210905..211177 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1088_9a-0001-cds	EsuBft1088_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_515 211178..211200 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1088_9a-0001-exon	agat-three_prime_utr-827	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_515 214102..216206 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_515:210905..216206+
coding sequence from alignment at Scaffold_515:210905..216206+

spliced messenger RNA

>EsuBft1088_9a-0001 ID=EsuBft1088_9a-0001|Name=EsuBft1088_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2801bp|location=Sequence derived from alignment at Scaffold_515:210905..216206+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CACGACCTCCAACCTTCACCTCTGGTCTTTCTCTCTGCCTATCCGACGCT
AGCAAGAACCCCTCACGCCTCTTGCATCTAACTTCGCCAAACATCAACAA
GAAGAGTCCACGGTTCTCCAGACAGAGTCTAAATCTTTCCTGCGAGTCGG
AGACCACCGCCCATCCGATATCCGACACGTCGGAGACCACCGCCCATCCG
GCATCCGACATCCGACACACACCGGGCCGCTCGAACCTCAGATCAGCAAG
CAACCAAGCAGAGTACCGTAAGCATGGGCCTCACCATCAGCAGCAGGAGT
CCGGCCATGGCATACTCAGAAGGGGGCATCTGGTGCAGCACGTTCGACGA
GATGGGACGACGCTGCTGGGTTAACAACGTGACGGGACAGAGGACCTACC
AGTTTATCCGAGGGAGGCCCGTGATCCCCACTCAGCCGGCGGTGTCGTCG
CTGTACGTCGTCCAGCAGAGTCCAATGCCAGGCCCACACACCGCGCCCTG
GGGTCTGCCGTCGCCAGGCTACCCTGCGCCTCCGCCGCCCGCTGCGGCCA
TGGTCCCGTGCCAAGCGGGTTATGGCGACGGTGCCCCCCCCGTCACTCCC
GCGGGGAATGGGGGCCTGGGCCAGCACCTGCAGAAGTACTACCTGAGGCC
TTCTTCGGAACGTTCGTGGATGTGGAACCGCAATCAGGGCCAATGATGGA
TGGGCATCACCACCCGTACGCGCAGATGTGGGACAAGTCACAGAGCCCAC
GATCAACGTTGCACGGGGGGCATCGTAGACGGGATGTTGCCCGTTCTACC
CTCACCTAGGAGGTTTACTCCGGCTTGGGGCGGGGTGGAACGTATGTACA
GTAATAGGGCGCCAACAGACGGAAAAGCTCGGGACGGTAGCATTTAATTG
TAAATAATTTTTTCTCACGCGGAATATCTGCCGTAAGGCTGGGTGAACCA
CTTGCGATGTTTTATCTCCTGATAGGATTCGGTGAAGCACTATTTTTGAA
GTAGACTCGTGTTGTTGTGGTGTAGGTCGGCGAAGTGGTTTGCGTTGGCC
CTGTGTGTGGGGGGGGGTCTTGGGTTTTTGCGCGTACGCGGGATCGGTAG
CAGTGCTTTGGCCACAACAAATCTGTAGTATGTATATGTTGTTTGCGTAG
CTGGCGCTCGGGCGCAAATGCGATGGTGCCTTAAGGTCCAAGGACGGTGG
CATGACTGCTACGGCCTGTCAAGCCGCTCTCCACTCTGGTCGCCAGGTTG
ATATGTTGCTGCTAGGAACCAGATTGATTTGTACATATTTAGACGAGAGC
GGCTTGGTTTGAGGGTGGGCGTTTGTCTGGTAGCTCTCGCAACTCTCTTG
TACTCTCCAGTGACGAGGAATGATGCATGCCCGGGATATCCCGCCTGTCT
CACGAAGTGCTAAATTTGGCCATGCAGTCTACACTTGCATATATCAGCCC
TATTTTAGGGATGCTCACAGGAGCAGGGGCGGGGAAAAAGGGGGACAGGG
GTAGTGGAGGGGCTCATATTGTGTGTGCGTGCTTGTAGGAAATGCTGTAC
GGTACATAGCAAATGAGTCGGGTGTGTATTCAATGGATCACCGCCGCGAG
GGGGACAGATGGAGGAGTATGTTTCGGCCTTGCTCGTCTTGTGGATGGGT
TCTGCGCCGTGGATCGAGTAGATATGGGTTGGTTGACATTGAGTCACAAG
TTCTGCTGTGCTTTGAACCCCCCAGAGAAACGGGATAGAGAGGAACATAG
TATACCGCTCCGGGACAAGTTGTTCTTTCGGGAGTGCAGGCTGTGCTTCA
TGTCCGTATGGCCAGGCTCGGCTGTTTGTTGTTTTCGTCCACCGCGTCTT
ATAGCGCGATCGAGCCGAAGACGTATCATGTAAATGCTGCTGTTGGAGCC
AGGCTTATGTAGGTAAAATGCATGGGCGCGCATGAAAGGGTGTATGTAAG
GGGGGAGGGAGTACAAGCCACCCTTTGTTTTCGGTTCCAGGTGTTGTTAT
GGAATCGTGAACCACACCCTTTTGGTGGGAGTATTTACGGTGAAAATTAG
GGGCTGGTTTTCAGCCTAGAGAAGCTCGGCTGTTGTCACTCAAACAGAGC
TTGGCTGATGGGCCGGAGTGATGTAGAAATTGTAGACTCGCGTGTTGTGG
TTCGTAGCTTTAAGTACTACTGTGGAGTTGAATCGTGCAAGTCGAAGTTG
CGGCGTTGCGAAACCTAGCGTTGCCTACGGTTCTCGCGTGCTGCAGCTGC
GTTGCTTGGCCCGGCGCCGATCCACTAGCGGTAGACTAGATGTAAGTATT
CAGAGCTGTATAAAGTAAGGGCGACGGACACTTCTCCCTTCCCTTGGTGA
ACAACAAAATGTCACGTTCGTGTGGTAGGCGGCCGGGTTTAAGTACGCAC
GACTCGAGCGGTGTAAGTAACCGTAAAGTGTTGGTACCACCCTCTTTTTT
TTGTACGCTCTCGGCGATGCGATGGAACAAACGCTTACGGTCACCGTCAA
CGGAACGCCCGTCCGGTTTTCCGTCGTACCGAGGTTGTTGAAGGAAAACC
CGCGAGAATATTTTGCCTCGTGGTGAAGACCATACGTCATGCCCAAGTGG
TTCGTAGTTTCGTCCAAAGGGGTTGGCGGCGTGTGGAGGGATTATCTGAA
TATCAAAAGGGATGCCCGAGAGCGCCGGTGGTACCTAGATGTAAACAACG
GTTGGTGGGTTCTGTGTGGTGAGATGGTCGTAACCTTCGACCACCCCACC
AAACGCCGTAAGTACTTGGATGGATTTTGGATTGGTTGGGGCGTGGCGCG
T

protein sequence of EsuBft1088_9a-0001

>EsuBft1088_9 ID=EsuBft1088_9|Name=EsuBft1088_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=140bp
MGLTISSRSPAMAYSEGGIWCSTFDEMGRRCWVNNVTGQRTYQFIRGRPV
IPTQPAVSSLYVVQQSPMPGPHTAPWGLPSPGYPAPPPPAAAMVPCQAGY
GDGAPPVTPAGNGGLGQHLQKYYLRPSSERSWMWNRNQGQ

mRNA from alignment at Scaffold_515:210905..216206+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1088_9a-0001 ID=EsuBft1088_9a-0001|Name=EsuBft1088_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5302bp|location=Sequence derived from alignment at Scaffold_515:210905..216206+ (Ectocarpus subulatus male Bft15b)
CACGACCTCCAACCTTCACCTCTGGTCTTTCTCTCTGCCTATCCGACGCT
AGCAAGAACCCCTCACGCCTCTTGCATCTAACTTCGCCAAACATCAACAA
GAAGAGTCCACGGTTCTCCAGACAGAGTCTAAATCTTTCCTGCGAGTCGG
AGACCACCGCCCATCCGATATCCGACACGTCGGAGACCACCGCCCATCCG
GCATCCGACATCCGACACACACCGGGCCGCTCGAACCTCAGATCAGCAAG
CAACCAAGCAGAGTACCGTAAGCATGGGCCTCACCATCAGCAGCAGGTAA
GAGGTAGATCTAGAACTTGGAAAGATGAACCCGCAATTGGTTGTTTGGCT
CTCATGCATGCATGGGGGCTCGGACAACAGCGCAGAGCAGGGTTCTTAAC
GAGATTTGTTCTGTTGGAATATGCCGACATGCGCCCTACTTTTTCGGAAA
ATGCCGATTTCTTGTCGGAAAATGCTGAAAATGAAGCGTCGGAATTTTTC
GGGCGCCGCTTCATTTTCGGCATTTTCCGAAGAGAAACTCCGAAATGACT
CCGAAATGGGAGCACTCGAGTTGCACTGCAGTCGCCAGCACGCTGAGCAC
CCTCTCGCACTCCAGATCTCGGGGACAGTCCCCAGGTGGCTTGCTTGTGT
CGCCTGTAAGCTTGTAGACCATGGATGGTCACGGAAAGCGCTGTGGATCT
GCAGATTTCGCGGAGCAAAGGCGGCGAAAGCGTCGCAGCCTGGAGATGAA
CCCGCTTTCCGTGATGCGGGCGATGGCTGCTGCGGTGGTTGTCGTGGTAG
CAAACCCGGCGACCCCGGCAGCTTGCGACAGCATCGTAAGGGGGCATCGC
GAACCCTCCGCTTCTACGGCAGCGGCGGGGGCGGCCACGCGCAGCCGGCG
AGAGGCGTGGCTCGGGAGAGGGTCGCGGCCGCGGCCGTTGTCATCATCAA
CGGCGGCAGCAGACTGCTGCAACCCATGACCCAACCCATGACCACAGGCA
GCACCACTTTCGCCTGTGTTGTCGTATCTCGCGGGTCGGCGATGGCCCCT
CGGCGGCCTGCCGCCGGTAGGTCCGCTGTTCTCGTCGCTCTGCATGTTTG
TACGCTGGCGCTGCCGCCTGCCTGAAGGCTGTGGTGTGTAAATGCTGTAC
GTTTTCAAACCGAAAAGTCTGAGATGGACTCGTTGTGTTGTATTTGGAAA
AATAAAAAAAAAAAAAATGGACCGCCTGACGTTTCTTAACGTCAGGCGGT
CCATTTTTTGAATTTCTCCGAAAGCCAGTCGGCATATTCCAAAAAACCGA
AGAATCGTTAAGAACCCTCCTCTCTGGCAGCGTCTGCTTTATTTTTGGCA
ACTGGCAACTTCAACAAGATCATCGTGTGTTGGTTGTTGTCCAATTCTGT
CCGGAGAGGAGGGGGGCAACCCCCCGATGTATCCTCGGACAGGTGCAGCC
CATTCGAGCTTGTGCGCGCACTCCACACAGCGTATCAGAATGATGGATCG
TGACTTACGCGACTCGTCCCTTGCCTTTTTCTTGCTCGCCCGGTGTGGAA
ACTGGCTTTCTCCTTGTTGTGTGAATGCATGATGAGCGCCCCCAACCGTT
AGCCGCTCNGGGCCGATACCCCCCCCCCCCCCATGAGCCGAACACCTCTG
TGTCCGCAACCCACAGCGTGTTGTATGGCAGAGGCGCTAGCCCGTACAGC
AGCCGCTTTGGTGACTGCCTTTCGAACGGATAGATGCACAAAGATACGTG
AGTCGACGAACACGCACACCCGCGGCACTGAGCGCCGGAACATTCTTGCG
GAACCCTGGGATAACCGGTACCTGGTCTTTTCGTTGGTGCACCCACACCG
ATCCTCCGCAGATGTAAACGCTGCACACGCTGACATGTACCGGTAGCACA
CGCGTCTCCGTCGCACCCACATCGCCACCCGACCGTAGTAGAAAGAATCG
GCCTTCGGCCTCTCTCGCCCGGTGGTACCTGCCACACGATATCTAGATTC
GTACGCGACCCCAATTTTAATTTTTACTTGTGTCATTTTGGACACGTTTC
CCCGTCTTCTGCTCTTTTGCGCAACAGGAGTCCGGCCATGGCATACTCAG
AAGGGGGCATCTGGTGCAGCACGTTCGACGAGATGGGACGACGCTGCTGG
TAAGAGGGCGACGTATCCTTGCGCCTGTTTTTTTTTTTTTTCCTTCGCTG
TGCGCGGTCTCTCTCCGTCATGACTTTGGCTGGTAGAGGGTCATGGCCAA
CTTCCCGCAAACCAGCATCACCGTTTGCTCCTGCTGGCTTCTGCTTGTAG
AAAACCTCCAGAAGATGGACACACGCATACTTTGAGCGCTCTTCAAAGAT
AAAAACAAGATGGACATTCCTGGCGTTGCCCTGCTCTTGTGTAGGAGGGC
GTGAGAAACTTGAAGCAATCCAATTTCATGTATATTTGCTTGCCACGTCA
CATCCTCGGTGCTTGGGAAGATCTGTGTTTGTGAACAACAATACATGTGT
AATGCACCTCCGCTAATCGCGCGAAAACGAGCCGTGACTCCACGAAGACA
ACGCCTATCGCCACCAAGGGGGTCTGTATACCCTTTCAGAACCTGCGAGG
ACTTGAGACCTCGATATGCAGGCGTTGAATGAAGTTCTGACGGCCACGTT
GAAGTTGGTCGTGTGTAGTGTATAGCTAGATAGATATGCAGAACGATTAT
TTTGTTGATACTAGCGGTTGCTTTATTTTCCCTCGACCCCGGGAACTTCC
CCCCCCCCCCCCCTCCTCTTCCTCCTCCTCCTCACCAACAAGTTAAACCA
CAATACCCTCTCCTTACCCGACTCTGCGTCGTGGTTTGCTATTATGCTTG
TCCGGCACGATGCCATCAGGGTTAACAACGTGACGGGACAGAGGACCTAC
CAGTTTATCCGAGGGAGGCCCGTGATCCCCACTCAGCCGGCGGTGTCGTC
GCTGTACGTCGTCCAGCAGAGTCCAATGCCAGGCCCACACACCGCGCCCT
GGGGTCTGCCGTCGCCAGGCTACCCTGCGCCTCCGCCGCCCGCTGCGGCC
ATGGTCCCGTGCCAAGCGGGTTATGGCGACGGTGCCCCCCCCGTCACTCC
CGCGGGGAATGGGGGCCTGGGCCAGCACCTGCAGAAGTACTACCTGAGGC
CTTCTTCGGAACGTTCGTGGATGTGGAACCGCAATCAGGGCCAATGATGG
ATGGGCATCACCACCCGTACGCGCAGATGTGGGACAAGTCACAGAGCCCA
CGATCAACGTTGCACGGGGGGCATCGTAGACGGGATGTTGCCCGTTCTAC
CCTCACCTAGGAGGTTTACTCCGGCTTGGGGCGGGGTGGAACGTATGTAC
AGTAATAGGGCGCCAACAGACGGAAAAGCTCGGGACGGTAGCATTTAATT
GTAAATAATTTTTTCTCACGCGGAATATCTGCCGTAAGGCTGGGTGAACC
ACTTGCGATGTTTTATCTCCTGATAGGATTCGGTGAAGCACTATTTTTGA
AGTAGACTCGTGTTGTTGTGGTGTAGGTCGGCGAAGTGGTTTGCGTTGGC
CCTGTGTGTGGGGGGGGGTCTTGGGTTTTTGCGCGTACGCGGGATCGGTA
GCAGTGCTTTGGCCACAACAAATCTGTAGTATGTATATGTTGTTTGCGTA
GCTGGCGCTCGGGCGCAAATGCGATGGTGCCTTAAGGTCCAAGGACGGTG
GCATGACTGCTACGGCCTGTCAAGCCGCTCTCCACTCTGGTCGCCAGGTT
GATATGTTGCTGCTAGGAACCAGATTGATTTGTACATATTTAGACGAGAG
CGGCTTGGTTTGAGGGTGGGCGTTTGTCTGGTAGCTCTCGCAACTCTCTT
GTACTCTCCAGTGACGAGGAATGATGCATGCCCGGGATATCCCGCCTGTC
TCACGAAGTGCTAAATTTGGCCATGCAGTCTACACTTGCATATATCAGCC
CTATTTTAGGGATGCTCACAGGAGCAGGGGCGGGGAAAAAGGGGGACAGG
GGTAGTGGAGGGGCTCATATTGTGTGTGCGTGCTTGTAGGAAATGCTGTA
CGGTACATAGCAAATGAGTCGGGTGTGTATTCAATGGATCACCGCCGCGA
GGGGGACAGATGGAGGAGTATGTTTCGGCCTTGCTCGTCTTGTGGATGGG
TTCTGCGCCGTGGATCGAGTAGATATGGGTTGGTTGACATTGAGTCACAA
GTTCTGCTGTGCTTTGAACCCCCCAGAGAAACGGGATAGAGAGGAACATA
GTATACCGCTCCGGGACAAGTTGTTCTTTCGGGAGTGCAGGCTGTGCTTC
ATGTCCGTATGGCCAGGCTCGGCTGTTTGTTGTTTTCGTCCACCGCGTCT
TATAGCGCGATCGAGCCGAAGACGTATCATGTAAATGCTGCTGTTGGAGC
CAGGCTTATGTAGGTAAAATGCATGGGCGCGCATGAAAGGGTGTATGTAA
GGGGGGAGGGAGTACAAGCCACCCTTTGTTTTCGGTTCCAGGTGTTGTTA
TGGAATCGTGAACCACACCCTTTTGGTGGGAGTATTTACGGTGAAAATTA
GGGGCTGGTTTTCAGCCTAGAGAAGCTCGGCTGTTGTCACTCAAACAGAG
CTTGGCTGATGGGCCGGAGTGATGTAGAAATTGTAGACTCGCGTGTTGTG
GTTCGTAGCTTTAAGTACTACTGTGGAGTTGAATCGTGCAAGTCGAAGTT
GCGGCGTTGCGAAACCTAGCGTTGCCTACGGTTCTCGCGTGCTGCAGCTG
CGTTGCTTGGCCCGGCGCCGATCCACTAGCGGTAGACTAGATGTAAGTAT
TCAGAGCTGTATAAAGTAAGGGCGACGGACACTTCTCCCTTCCCTTGGTG
AACAACAAAATGTCACGTTCGTGTGGTAGGCGGCCGGGTTTAAGTACGCA
CGACTCGAGCGGTGTAAGTAACCGTAAAGTGTTGGTACCACCCTCTTTTT
TTTGTACGCTCTCGGCGATGCGATGGAACAAACGCTTACGGTCACCGTCA
ACGGAACGCCCGTCCGGTTTTCCGTCGTACCGAGGTTGTTGAAGGAAAAC
CCGCGAGAATATTTTGCCTCGTGGTGAAGACCATACGTCATGCCCAAGTG
GTTCGTAGTTTCGTCCAAAGGGGTTGGCGGCGTGTGGAGGGATTATCTGA
ATATCAAAAGGGATGCCCGAGAGCGCCGGTGGTACCTAGATGTAAACAAC
GGTTGGTGGGTTCTGTGTGGTGAGATGGTCGTAACCTTCGACCACCCCAC
CAAACGCCGTAAGTACTTGGATGGATTTTGGATTGGTTGGGGCGTGGCGC
GT

Coding sequence (CDS) from alignment at Scaffold_515:210905..216206+

>EsuBft1088_9a-0001 ID=EsuBft1088_9a-0001|Name=EsuBft1088_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=423bp|location=Sequence derived from alignment at Scaffold_515:210905..216206+ (Ectocarpus subulatus male Bft15b)
ATGGGCCTCACCATCAGCAGCAGGAGTCCGGCCATGGCATACTCAGAAGG
GGGCATCTGGTGCAGCACGTTCGACGAGATGGGACGACGCTGCTGGGTTA
ACAACGTGACGGGACAGAGGACCTACCAGTTTATCCGAGGGAGGCCCGTG
ATCCCCACTCAGCCGGCGGTGTCGTCGCTGTACGTCGTCCAGCAGAGTCC
AATGCCAGGCCCACACACCGCGCCCTGGGGTCTGCCGTCGCCAGGCTACC
CTGCGCCTCCGCCGCCCGCTGCGGCCATGGTCCCGTGCCAAGCGGGTTAT
GGCGACGGTGCCCCCCCCGTCACTCCCGCGGGGAATGGGGGCCTGGGCCA
GCACCTGCAGAAGTACTACCTGAGGCCTTCTTCGGAACGTTCGTGGATGT
GGAACCGCAATCAGGGCCAATGA